Randomized Controlled Trials (Rcts)
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Internal Validity Is About Causal Interpretability
Internal Validity is about Causal Interpretability Before we can discuss Internal Validity, we have to discuss different types of Internal Validity variables and review causal RH:s and the evidence needed to support them… Every behavior/measure used in a research study is either a ... Constant -- all the participants in the study have the same value on that behavior/measure or a ... • Measured & Manipulated Variables & Constants Variable -- when at least some of the participants in the study • Causes, Effects, Controls & Confounds have different values on that behavior/measure • Components of Internal Validity • “Creating” initial equivalence and every behavior/measure is either … • “Maintaining” ongoing equivalence Measured -- the value of that behavior/measure is obtained by • Interrelationships between Internal Validity & External Validity observation or self-report of the participant (often called “subject constant/variable”) or it is … Manipulated -- the value of that behavior/measure is controlled, delivered, determined, etc., by the researcher (often called “procedural constant/variable”) So, every behavior/measure in any study is one of four types…. constant variable measured measured (subject) measured (subject) constant variable manipulated manipulated manipulated (procedural) constant (procedural) variable Identify each of the following (as one of the four above, duh!)… • Participants reported practicing between 3 and 10 times • All participants were given the same set of words to memorize • Each participant reported they were a Psyc major • Each participant was given either the “homicide” or the “self- defense” vignette to read From before... Circle the manipulated/causal & underline measured/effect variable in each • Causal RH: -- differences in the amount or kind of one behavior cause/produce/create/change/etc. -
Introduction to Biostatistics
Introduction to Biostatistics Jie Yang, Ph.D. Associate Professor Department of Family, Population and Preventive Medicine Director Biostatistical Consulting Core Director Biostatistics and Bioinformatics Shared Resource, Stony Brook Cancer Center In collaboration with Clinical Translational Science Center (CTSC) and the Biostatistics and Bioinformatics Shared Resource (BB-SR), Stony Brook Cancer Center (SBCC). OUTLINE What is Biostatistics What does a biostatistician do • Experiment design, clinical trial design • Descriptive and Inferential analysis • Result interpretation What you should bring while consulting with a biostatistician WHAT IS BIOSTATISTICS • The science of (bio)statistics encompasses the design of biological/clinical experiments the collection, summarization, and analysis of data from those experiments the interpretation of, and inference from, the results How to Lie with Statistics (1954) by Darrell Huff. http://www.youtube.com/watch?v=PbODigCZqL8 GOAL OF STATISTICS Sampling POPULATION Probability SAMPLE Theory Descriptive Descriptive Statistics Statistics Inference Population Sample Parameters: Inferential Statistics Statistics: 흁, 흈, 흅… 푿ഥ , 풔, 풑ෝ,… PROPERTIES OF A “GOOD” SAMPLE • Adequate sample size (statistical power) • Random selection (representative) Sampling Techniques: 1.Simple random sampling 2.Stratified sampling 3.Systematic sampling 4.Cluster sampling 5.Convenience sampling STUDY DESIGN EXPERIEMENT DESIGN Completely Randomized Design (CRD) - Randomly assign the experiment units to the treatments -
Experimentation Science: a Process Approach for the Complete Design of an Experiment
Kansas State University Libraries New Prairie Press Conference on Applied Statistics in Agriculture 1996 - 8th Annual Conference Proceedings EXPERIMENTATION SCIENCE: A PROCESS APPROACH FOR THE COMPLETE DESIGN OF AN EXPERIMENT D. D. Kratzer K. A. Ash Follow this and additional works at: https://newprairiepress.org/agstatconference Part of the Agriculture Commons, and the Applied Statistics Commons This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 4.0 License. Recommended Citation Kratzer, D. D. and Ash, K. A. (1996). "EXPERIMENTATION SCIENCE: A PROCESS APPROACH FOR THE COMPLETE DESIGN OF AN EXPERIMENT," Conference on Applied Statistics in Agriculture. https://doi.org/ 10.4148/2475-7772.1322 This is brought to you for free and open access by the Conferences at New Prairie Press. It has been accepted for inclusion in Conference on Applied Statistics in Agriculture by an authorized administrator of New Prairie Press. For more information, please contact [email protected]. Conference on Applied Statistics in Agriculture Kansas State University Applied Statistics in Agriculture 109 EXPERIMENTATION SCIENCE: A PROCESS APPROACH FOR THE COMPLETE DESIGN OF AN EXPERIMENT. D. D. Kratzer Ph.D., Pharmacia and Upjohn Inc., Kalamazoo MI, and K. A. Ash D.V.M., Ph.D., Town and Country Animal Hospital, Charlotte MI ABSTRACT Experimentation Science is introduced as a process through which the necessary steps of experimental design are all sufficiently addressed. Experimentation Science is defined as a nearly linear process of objective formulation, selection of experimentation unit and decision variable(s), deciding treatment, design and error structure, defining the randomization, statistical analyses and decision procedures, outlining quality control procedures for data collection, and finally analysis, presentation and interpretation of results. -
Validity and Reliability of the Questionnaire for Compliance with Standard Precaution for Nurses
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Cadernos Espinosanos (E-Journal) Rev Saúde Pública 2015;49:87 Original Articles DOI:10.1590/S0034-8910.2015049005975 Marília Duarte ValimI Validity and reliability of the Maria Helena Palucci MarzialeII Miyeko HayashidaII Questionnaire for Compliance Fernanda Ludmilla Rossi RochaIII with Standard Precaution Jair Lício Ferreira SantosIV ABSTRACT OBJECTIVE: To evaluate the validity and reliability of the Questionnaire for Compliance with Standard Precaution for nurses. METHODS: This methodological study was conducted with 121 nurses from health care facilities in Sao Paulo’s countryside, who were represented by two high-complexity and by three average-complexity health care facilities. Internal consistency was calculated using Cronbach’s alpha and stability was calculated by the intraclass correlation coefficient, through test-retest. Convergent, discriminant, and known-groups construct validity techniques were conducted. RESULTS: The questionnaire was found to be reliable (Cronbach’s alpha: 0.80; intraclass correlation coefficient: (0.97) In regards to the convergent and discriminant construct validity, strong correlation was found between compliance to standard precautions, the perception of a safe environment, and the smaller perception of obstacles to follow such precautions (r = 0.614 and r = 0.537, respectively). The nurses who were trained on the standard precautions and worked on the health care facilities of higher complexity were shown to comply more (p = 0.028 and p = 0.006, respectively). CONCLUSIONS: The Brazilian version of the Questionnaire for I Departamento de Enfermagem. Centro Compliance with Standard Precaution was shown to be valid and reliable. -
Statistical Matching: a Paradigm for Assessing the Uncertainty in the Procedure
Journal of Of®cial Statistics, Vol. 17, No. 3, 2001, pp. 407±422 Statistical Matching: A Paradigm for Assessing the Uncertainty in the Procedure Chris Moriarity1 and Fritz Scheuren2 Statistical matching has been widely used by practitioners without always adequate theoreti- cal underpinnings. The work of Kadane (1978) has been a notable exception and the present article extends his insights. Kadane's 1978 article is reprinted in this JOS issue. Modern com- puting can make possible, under techniques described here, a real advance in the application of statistical matching. Key words: Multivariate normal; complex survey designs; robustness; resampling; variance- covariance structures; and application suggestions. 1. Introduction Many government policy questions, whether on the expenditure or tax side, lend them- selves to microsimulation modeling, where ``what if'' analyses of alternative policy options are carried out (e.g., Citro and Hanushek 1991). Often, the starting point for such models, in an attempt to achieve a degree of verisimilitude, is to employ information contained in several survey microdata ®les. Typically, not all the variables wanted for the modeling have been collected together from a single individual or family. However, the separate survey ®les may have many demographic and other control variables in common. The idea arose, then, of matching the separate ®les on these common variables and thus creating a composite ®le for analysis. ``Statistical matching,'' as the technique began to be called, has been more or less widely practiced since the advent of public use ®les in the 1960's. Arguably, the desire to employ statistical matching was even an impetus for the release of several of the early public use ®les, including those involving U.S. -
FDA Oncology Experience in Innovative Adaptive Trial Designs
Innovative Adaptive Trial Designs Rajeshwari Sridhara, Ph.D. Director, Division of Biometrics V Office of Biostatistics, CDER, FDA 9/3/2015 Sridhara - Ovarian cancer workshop 1 Fixed Sample Designs • Patient population, disease assessments, treatment, sample size, hypothesis to be tested, primary outcome measure - all fixed • No change in the design features during the study Adaptive Designs • A study that includes a prospectively planned opportunity for modification of one or more specified aspects of the study design and hypotheses based on analysis of data (interim data) from subjects in the study 9/3/2015 Sridhara - Ovarian cancer workshop 2 Bayesian Designs • In the Bayesian paradigm, the parameter measuring treatment effect is regarded as a random variable • Bayesian inference is based on the posterior distribution (Bayes’ Rule – updated based on observed data) – Outcome adaptive • By definition adaptive design 9/3/2015 Sridhara - Ovarian cancer workshop 3 Adaptive Designs (Frequentist or Bayesian) • Allows for planned design modifications • Modifications based on data accrued in the trial up to the interim time • Unblinded or blinded interim results • Control probability of false positive rate for multiple options • Control operational bias • Assumes independent increments of information 9/3/2015 Sridhara - Ovarian cancer workshop 4 Enrichment Designs – Prognostic or Predictive • Untargeted or All comers design: – post-hoc enrichment, prospective-retrospective designs – Marker evaluation after randomization (example: KRAS in cetuximab -
FORMULAS from EPIDEMIOLOGY KEPT SIMPLE (3E) Chapter 3: Epidemiologic Measures
FORMULAS FROM EPIDEMIOLOGY KEPT SIMPLE (3e) Chapter 3: Epidemiologic Measures Basic epidemiologic measures used to quantify: • frequency of occurrence • the effect of an exposure • the potential impact of an intervention. Epidemiologic Measures Measures of disease Measures of Measures of potential frequency association impact (“Measures of Effect”) Incidence Prevalence Absolute measures of Relative measures of Attributable Fraction Attributable Fraction effect effect in exposed cases in the Population Incidence proportion Incidence rate Risk difference Risk Ratio (Cumulative (incidence density, (Incidence proportion (Incidence Incidence, Incidence hazard rate, person- difference) Proportion Ratio) Risk) time rate) Incidence odds Rate Difference Rate Ratio (Incidence density (Incidence density difference) ratio) Prevalence Odds Ratio Difference Macintosh HD:Users:buddygerstman:Dropbox:eks:formula_sheet.doc Page 1 of 7 3.1 Measures of Disease Frequency No. of onsets Incidence Proportion = No. at risk at beginning of follow-up • Also called risk, average risk, and cumulative incidence. • Can be measured in cohorts (closed populations) only. • Requires follow-up of individuals. No. of onsets Incidence Rate = ∑person-time • Also called incidence density and average hazard. • When disease is rare (incidence proportion < 5%), incidence rate ≈ incidence proportion. • In cohorts (closed populations), it is best to sum individual person-time longitudinally. It can also be estimated as Σperson-time ≈ (average population size) × (duration of follow-up). Actuarial adjustments may be needed when the disease outcome is not rare. • In an open populations, Σperson-time ≈ (average population size) × (duration of follow-up). Examples of incidence rates in open populations include: births Crude birth rate (per m) = × m mid-year population size deaths Crude mortality rate (per m) = × m mid-year population size deaths < 1 year of age Infant mortality rate (per m) = × m live births No. -
A Machine Learning Approach to Census Record Linking∗
A Machine Learning Approach to Census Record Linking∗ James J. Feigenbaumy March 28, 2016 Abstract Thanks to the availability of new historical census sources and advances in record linking technology, economic historians are becoming big data geneal- ogists. Linking individuals over time and between databases has opened up new avenues for research into intergenerational mobility, the long run effects of early life conditions, assimilation, discrimination, and the returns to edu- cation. To take advantage of these new research opportunities, scholars need to be able to accurately and efficiently match historical records and produce an unbiased dataset of links for analysis. I detail a standard and transparent census matching technique for constructing linked samples that can be repli- cated across a variety of cases. The procedure applies insights from machine learning classification and text comparison to record linkage of historical data. My method teaches an algorithm to replicate how a well trained and consistent researcher would create a linked sample across sources. I begin by extracting a subset of possible matches for each record, and then use training data to tune a matching algorithm that attempts to minimize both false positives and false negatives, taking into account the inherent noise in historical records. To make the procedure precise, I trace its application to an example from my own work, linking children from the 1915 Iowa State Census to their adult-selves in the 1940 Federal Census. In addition, I provide guidance on a number of practical questions, including how large the training data needs to be relative to the sample. ∗I thank Christoph Hafemeister, Jamie Lee, Christopher Muller, Martin Rotemberg, and Nicolas Ziebarth for detailed feedback and thoughts on this project, as well as seminar participants at the NBER DAE Summer Institute and the Berkeley Demography Conference on Census Linking. -
Incidence and Secondary Transmission of SARS-Cov-2 Infections in Schools
Prepublication Release Incidence and Secondary Transmission of SARS-CoV-2 Infections in Schools Kanecia O. Zimmerman, MD; Ibukunoluwa C. Akinboyo, MD; M. Alan Brookhart, PhD; Angelique E. Boutzoukas, MD; Kathleen McGann, MD; Michael J. Smith, MD, MSCE; Gabriela Maradiaga Panayotti, MD; Sarah C. Armstrong, MD; Helen Bristow, MPH; Donna Parker, MPH; Sabrina Zadrozny, PhD; David J. Weber, MD, MPH; Daniel K. Benjamin, Jr., MD, PhD; for The ABC Science Collaborative DOI: 10.1542/peds.2020-048090 Journal: Pediatrics Article Type: Regular Article Citation: Zimmerman KO, Akinboyo IC, Brookhart A, et al. Incidence and secondary transmission of SARS-CoV-2 infections in schools. Pediatrics. 2021; doi: 10.1542/peds.2020- 048090 This is a prepublication version of an article that has undergone peer review and been accepted for publication but is not the final version of record. This paper may be cited using the DOI and date of access. This paper may contain information that has errors in facts, figures, and statements, and will be corrected in the final published version. The journal is providing an early version of this article to expedite access to this information. The American Academy of Pediatrics, the editors, and authors are not responsible for inaccurate information and data described in this version. Downloaded from©2021 www.aappublications.org/news American Academy by of guest Pediatrics on September 27, 2021 Prepublication Release Incidence and Secondary Transmission of SARS-CoV-2 Infections in Schools Kanecia O. Zimmerman, MD1,2,3; Ibukunoluwa C. Akinboyo, MD1,2; M. Alan Brookhart, PhD4; Angelique E. Boutzoukas, MD1,2; Kathleen McGann, MD2; Michael J. -
Sampling Methods It’S Impractical to Poll an Entire Population—Say, All 145 Million Registered Voters in the United States
Sampling Methods It’s impractical to poll an entire population—say, all 145 million registered voters in the United States. That is why pollsters select a sample of individuals that represents the whole population. Understanding how respondents come to be selected to be in a poll is a big step toward determining how well their views and opinions mirror those of the voting population. To sample individuals, polling organizations can choose from a wide variety of options. Pollsters generally divide them into two types: those that are based on probability sampling methods and those based on non-probability sampling techniques. For more than five decades probability sampling was the standard method for polls. But in recent years, as fewer people respond to polls and the costs of polls have gone up, researchers have turned to non-probability based sampling methods. For example, they may collect data on-line from volunteers who have joined an Internet panel. In a number of instances, these non-probability samples have produced results that were comparable or, in some cases, more accurate in predicting election outcomes than probability-based surveys. Now, more than ever, journalists and the public need to understand the strengths and weaknesses of both sampling techniques to effectively evaluate the quality of a survey, particularly election polls. Probability and Non-probability Samples In a probability sample, all persons in the target population have a change of being selected for the survey sample and we know what that chance is. For example, in a telephone survey based on random digit dialing (RDD) sampling, researchers know the chance or probability that a particular telephone number will be selected. -
Stability and Median Rationalizability for Aggregate Matchings
games Article Stability and Median Rationalizability for Aggregate Matchings Federico Echenique 1, SangMok Lee 2, Matthew Shum 1 and M. Bumin Yenmez 3,* 1 Division of the Humanities and Social Sciences, California Institute of Technology, Pasadena, CA 91125, USA; [email protected] (F.E.); [email protected] (M.S.) 2 Department of Economics, Washington University in St. Louis, St. Louis, MO 63130, USA; [email protected] 3 Department of Economics, Boston College, Chestnut Hill, MA 02467, USA * Correspondence: [email protected] Abstract: We develop the theory of stability for aggregate matchings used in empirical studies and establish fundamental properties of stable matchings including the result that the set of stable matchings is a non-empty, complete, and distributive lattice. Aggregate matchings are relevant as matching data in revealed preference theory. We present a result on rationalizing a matching data as the median stable matching. Keywords: aggregate matching; median stable matching; rationalizability; lattice 1. Introduction Following the seminal work of [1], an extensive literature has developed regarding matching markets with non-transferable utility. This literature assumes that there are agent-specific preferences, and studies the existence of stable matchings in which each Citation: Echenique, F.; Lee, S.; agent prefers her assigned partner to the outside option of being unmatched, and there Shum, M.; Yenmez, M.B. Stability and are no pairs of agents that would like to match with each other rather than keeping their Median Rationalizability for assigned partners. Aggregate Matchings. Games 2021, 12, In this paper, we develop the theory of stability for aggregate matchings, which we 33. -
Statistical Analysis 8: Two-Way Analysis of Variance (ANOVA)
Statistical Analysis 8: Two-way analysis of variance (ANOVA) Research question type: Explaining a continuous variable with 2 categorical variables What kind of variables? Continuous (scale/interval/ratio) and 2 independent categorical variables (factors) Common Applications: Comparing means of a single variable at different levels of two conditions (factors) in scientific experiments. Example: The effective life (in hours) of batteries is compared by material type (1, 2 or 3) and operating temperature: Low (-10˚C), Medium (20˚C) or High (45˚C). Twelve batteries are randomly selected from each material type and are then randomly allocated to each temperature level. The resulting life of all 36 batteries is shown below: Table 1: Life (in hours) of batteries by material type and temperature Temperature (˚C) Low (-10˚C) Medium (20˚C) High (45˚C) 1 130, 155, 74, 180 34, 40, 80, 75 20, 70, 82, 58 2 150, 188, 159, 126 136, 122, 106, 115 25, 70, 58, 45 type Material 3 138, 110, 168, 160 174, 120, 150, 139 96, 104, 82, 60 Source: Montgomery (2001) Research question: Is there difference in mean life of the batteries for differing material type and operating temperature levels? In analysis of variance we compare the variability between the groups (how far apart are the means?) to the variability within the groups (how much natural variation is there in our measurements?). This is why it is called analysis of variance, abbreviated to ANOVA. This example has two factors (material type and temperature), each with 3 levels. Hypotheses: The 'null hypothesis' might be: H0: There is no difference in mean battery life for different combinations of material type and temperature level And an 'alternative hypothesis' might be: H1: There is a difference in mean battery life for different combinations of material type and temperature level If the alternative hypothesis is accepted, further analysis is performed to explore where the individual differences are.