Formation of Homocitrulline During Heating of Milk
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Protein Carbamylation Is a Hallmark of Aging SEE COMMENTARY
Protein carbamylation is a hallmark of aging SEE COMMENTARY Laëtitia Gorissea,b, Christine Pietrementa,c, Vincent Vuibleta,d,e, Christian E. H. Schmelzerf, Martin Köhlerf, Laurent Ducaa, Laurent Debellea, Paul Fornèsg, Stéphane Jaissona,b,h, and Philippe Gillerya,b,h,1 aUniversity of Reims Champagne-Ardenne, Extracellular Matrix and Cell Dynamics Unit CNRS UMR 7369, Reims 51100, France; bFaculty of Medicine, Laboratory of Medical Biochemistry and Molecular Biology, Reims 51100, France; cDepartment of Pediatrics (Nephrology Unit), American Memorial Hospital, University Hospital, Reims 51100, France; dDepartment of Nephrology and Transplantation, University Hospital, Reims 51100, France; eLaboratory of Biopathology, University Hospital, Reims 51100, France; fInstitute of Pharmacy, Faculty of Natural Sciences I, Martin Luther University Halle-Wittenberg, Halle 24819, Germany; gDepartment of Pathology (Forensic Institute), University Hospital, Reims 51100, France; and hLaboratory of Pediatric Biology and Research, Maison Blanche Hospital, University Hospital, Reims 51100, France Edited by Bruce S. McEwen, The Rockefeller University, New York, NY, and approved November 23, 2015 (received for review August 31, 2015) Aging is a progressive process determined by genetic and acquired cartilage, arterial wall, or brain, and shown to be correlated to the factors. Among the latter are the chemical reactions referred to as risk of adverse aging-related outcomes (5–10). Because AGE nonenzymatic posttranslational modifications (NEPTMs), such as formation -
Chemical Methods for the Characterization of Proteolysis in Cheese During Ripening Plh Mcsweeney, Pf Fox
Chemical methods for the characterization of proteolysis in cheese during ripening Plh Mcsweeney, Pf Fox To cite this version: Plh Mcsweeney, Pf Fox. Chemical methods for the characterization of proteolysis in cheese during ripening. Le Lait, INRA Editions, 1997, 77 (1), pp.41-76. hal-00929515 HAL Id: hal-00929515 https://hal.archives-ouvertes.fr/hal-00929515 Submitted on 1 Jan 1997 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Lait (1997) 77, 41-76 41 © ElseviernNRA Review Chemical methods for the characterization of proteolysis in cheese during ripening PLH McSweeney, PF Fox Department of Food Chemistry, University College, Cork, Ireland Summary - Proteolysis is the principal and most complex biochemical event which occurs during the maturation of most cheese varieties. Proteolysis has been the subject of much study and a range of analytieal techniques has been developed to assess its extent and nature. Methods for assessing pro- teolysis can he c1assified under two broad headings: non-specifie and specifie techniques, both of which are reviewed. Non-specifie techniques include the quantitation of nitrogen soluble in various extrac- tants or precipitants and the Iiberation of reactive groups. -
Designing Peptidomimetics
CORE Metadata, citation and similar papers at core.ac.uk Provided by UPCommons. Portal del coneixement obert de la UPC DESIGNING PEPTIDOMIMETICS Juan J. Perez Dept. of Chemical Engineering ETS d’Enginyeria Industrial Av. Diagonal, 647 08028 Barcelona, Spain 1 Abstract The concept of a peptidomimetic was coined about forty years ago. Since then, an enormous effort and interest has been devoted to mimic the properties of peptides with small molecules or pseudopeptides. The present report aims to review different approaches described in the past to succeed in this goal. Basically, there are two different approaches to design peptidomimetics: a medicinal chemistry approach, where parts of the peptide are successively replaced by non-peptide moieties until getting a non-peptide molecule and a biophysical approach, where a hypothesis of the bioactive form of the peptide is sketched and peptidomimetics are designed based on hanging the appropriate chemical moieties on diverse scaffolds. Although both approaches have been used in the past, the former has been more widely used to design peptidomimetics of secretory peptides, whereas the latter is nowadays getting momentum with the recent interest in designing protein-protein interaction inhibitors. The present report summarizes the relevance of the information gathered from structure-activity studies, together with a short review on the strategies used to design new peptide analogs and surrogates. In a following section there is a short discussion on the characterization of the bioactive conformation of a peptide, to continue describing the process of designing conformationally constrained analogs producing first and second generation peptidomimetics. Finally, there is a section devoted to review the use of organic scaffolds to design peptidomimetics based on the information available on the bioactive conformation of the peptide. -
Ratio of Phosphate to Amino Acids
National Institute for Health and Care Excellence Final Neonatal parenteral nutrition [D10] Ratio of phosphate to amino acids NICE guideline NG154 Evidence reviews February 2020 Final These evidence reviews were developed by the National Guideline Alliance which is part of the Royal College of Obstetricians and Gynaecologists FINAL Error! No text of specified style in document. Disclaimer The recommendations in this guideline represent the view of NICE, arrived at after careful consideration of the evidence available. When exercising their judgement, professionals are expected to take this guideline fully into account, alongside the individual needs, preferences and values of their patients or service users. The recommendations in this guideline are not mandatory and the guideline does not override the responsibility of healthcare professionals to make decisions appropriate to the circumstances of the individual patient, in consultation with the patient and/or their carer or guardian. Local commissioners and/or providers have a responsibility to enable the guideline to be applied when individual health professionals and their patients or service users wish to use it. They should do so in the context of local and national priorities for funding and developing services, and in light of their duties to have due regard to the need to eliminate unlawful discrimination, to advance equality of opportunity and to reduce health inequalities. Nothing in this guideline should be interpreted in a way that would be inconsistent with compliance with those duties. NICE guidelines cover health and care in England. Decisions on how they apply in other UK countries are made by ministers in the Welsh Government, Scottish Government, and Northern Ireland Executive. -
Homocitrulline/Citrulline Assay Kit
Product Manual Homocitrulline/Citrulline Assay Kit Catalog Number MET- 5027 100 assays FOR RESEARCH USE ONLY Not for use in diagnostic procedures Introduction Homocitrulline is an amino acid found in mammalian metabolism as a free-form metabolite of ornithine (another amino acid not found in proteins but is involved in the urea cycle). Through the process of carbamylation, homocitrulline amino acid residues can also be formed in proteins. Carbamylation results from the binding of isocyanic acid with amino groups (isocyanic acid spontaneously derived from high concentrations of urea) and primarily leads to the formation of either N-terminally carbamylated proteins and/or carbamylated lysine side chains (forming homocitrulline residues) (Figure 1A). It is known that elevated urea directly induces the formation of potentially atherogenic carbamylated LDL (cLDL). High blood concentrations of urea leading to the carbamylation process were detected in uremic patients and patients with end-stage renal disease. Homocitrulline can be detected in larger amounts in the urine of individuals with urea cycle disorders. Citrulline is an amino acid very similar in structure to homocitrulline; however, the former is one methylene group shorter than the latter. In mammals, free citrulline is produced from free arginine during the enzymatic generation of nitric oxide (NO) by nitric oxide synthase (NOS) (Figure 1B). In addition, citrulline is synthesized from ornithine and carbamoyl phosphate in one of the main reactions of the urea cycle, a process that causes excretion of ammonia. Citrulline is not normally incorporated into proteins, but can be found in proteins due to post translational modification. The enzyme pepdidylarginine deiminase (PADI) can convert arginine to citrulline in the presence of calcium (Figure 1C). -
Enzymatic Aminoacylation of Trna with Unnatural Amino Acids
Enzymatic aminoacylation of tRNA with unnatural amino acids Matthew C. T. Hartman, Kristopher Josephson, and Jack W. Szostak* Department of Molecular Biology and Center for Computational and Integrative Biology, Simches Research Center, Massachusetts General Hospital, 185 Cambridge Street, Boston, MA 02114 Edited by Peter G. Schultz, The Scripps Research Institute, La Jolla, CA, and approved January 24, 2006 (received for review October 21, 2005) The biochemical flexibility of the cellular translation apparatus applicable to screening large numbers of unnatural amino acids. offers, in principle, a simple route to the synthesis of drug-like The commonly used ATP-PPi exchange assay, although very modified peptides and novel biopolymers. However, only Ϸ75 sensitive, does not actually measure the formation of the AA- unnatural building blocks are known to be fully compatible with tRNA product (13). A powerful assay developed by Wolfson and enzymatic tRNA acylation and subsequent ribosomal synthesis of Uhlenbeck (14) allows the observation of AA-tRNA synthesis modified peptides. Although the translation system can reject even with unnatural amino acids through the use of tRNA which substrate analogs at several steps along the pathway to peptide is 32P-labeled at the terminal C-p-A phosphodiester linkage (4, synthesis, much of the specificity resides at the level of the 15). Because the assay is based on the separation of AMP and aminoacyl-tRNA synthetase (AARS) enzymes that are responsible esterified AA-AMP by TLC, each amino acid analog must be for charging tRNAs with amino acids. We have developed an AARS tested in a separate assay mixture; moreover, this assay cannot assay based on mass spectrometry that can be used to rapidly generally distinguish between tRNA charged with the desired identify unnatural monomers that can be enzymatically charged unnatural amino acid or with contaminating natural amino acid. -
Design and Synthesis of Novel Prodrugs to Modulate Gaba Receptors in Cancer Hui Zhang
DESIGN AND SYNTHESIS OF NOVEL PRODRUGS TO MODULATE GABA RECEPTORS IN CANCER HUI ZHANG Thesis submitted in partial fulfilment of the requirements of Edinburgh Napier University for the degree of Doctor of Philosophy March 2017 Declaration It is hereby declared that this thesis and the research work upon which it is based were conducted by the author, Hui Zhang. Hui Zhang Abstract of Thesis GABA (gamma-amino butanoic acid) is the main inhibitory neurotransmitter in the mammalian central nervous system. GABA has been found to play an inhibitory role in some cancers, including colon carcinoma, cholangiocarcinoma, and lung adenocarcinoma. Growing evidence shows that GABAB receptors are involved in tumour development. The expression level of GABAB receptors was found to be upregulated in some human tumours, including the pancreas, and cancer cell lines, suggesting that GABAB receptors may be potential targets for cancer therapy and diagnosis. In this research programme, several diverse series of potential anticancer prodrugs of GABA and GABA receptor-targeting agents have been rationally designed and synthesised for selective activation in the tumour microenvironment. In one approach, a series of oligopeptide conjugate prodrugs have been synthesised as protease-activatable substrates for either the extracellular matrix metalloproteinase MMP-9 or the lysosomal endoprotease legumain; each of which are overexpressed in the tumour environment and are effectors of tumour growth and metastasis. Specifically, a novel fluorogenic, oligopeptide FRET substrate prodrug of legumain HZ101 (Rho-Pro-Ala-Asn~GABA-spacer-AQ) has been characterised and shown to have theranostic potential. Proof of principle has been demonstrated using recombinant human legumain for which HZ101 is an efficient substrate and is latently quenched until cleaved. -
Rheumatoid Arthritis Antigens Homocitrulline and Citrulline Are
Turunen et al. Arthritis Research & Therapy (2016) 18:239 DOI 10.1186/s13075-016-1140-9 RESEARCH ARTICLE Open Access Rheumatoid arthritis antigens homocitrulline and citrulline are generated by local myeloperoxidase and peptidyl arginine deiminases 2, 3 and 4 in rheumatoid nodule and synovial tissue Sanna Turunen1* , Johanna Huhtakangas1,3, Tomi Nousiainen2, Maarit Valkealahti2, Jukka Melkko4, Juha Risteli5,6 and Petri Lehenkari1,2 Abstract Background: Seropositive rheumatoid arthritis (RA) is characterized by autoantibodies binding to citrullinated and homocitrullinated proteins. We wanted to study the expression patterns of these disease-associated protein forms and if the rheumatoid nodule and synovial tissue itself contain biologically active levels of citrullinating peptidyl arginine deiminases 2, 3 and 4 and homocitrullination-facilitating neutrophil enzyme myeloperoxidase. Method: Total of 195 synovial samples from metatarsal joints from five ACPA/RF-positive RA patients (n = 77), synovial samples from knees of eight seropositive RA (n = 60), seven seronegative RA (n = 33) and five osteoarthritis (n = 25) patients were analyzed for citrulline and homocitrulline contents using HPLC. The location of citrulline- and homocitrulline-containing proteins, PAD 2, 3, 4 and myeloperoxidase were shown by immunostaining. Myeloperoxidase and citrulline- or homocitrulline-containing proteins were stained on Western blot. Results: Overall, necrosis was frequent in metatarsals of seropositive RA and absent in seronegative RA and osteoarthritis patients. In histological analysis, there was a significant local patterning and variation in the citrulline and homocitrulline content and it was highest in metatarsal synovial tissues of seropositive RA patients. We found peptidyl arginine deiminase 2, 3 and 4 in the lining and sublining layers of intact synovial tissue. -
Carbamylation IP Kit
Carbamylation IP Kit Item No. 601930 www.caymanchem.com Customer Service 800.364.9897 Technical Support 888.526.5351 1180 E. Ellsworth Rd · Ann Arbor, MI · USA TABLE OF CONTENTS GENERAL INFORMATION GENERAL INFORMATION 3 Materials Supplied Materials Supplied 3 Safety Data 4 Precautions 4 If You Have Problems Item Item Quantity/Amount Storage 4 Storage and Stability Number 5 Materials Needed but Not Supplied 601931 Carbamylation Affinity Sorbent (50% slurry) 1 vial/400 µl 4°C INTRODUCTION 6 Background 601932 Anti-Carbamylation (Homocitrulline) 1 vial/150 µl -20°C 7 About This Assay Polyclonal Antibody PRE-ASSAY PREPARATION 8 Reagent Preparation 601933 Carbamylated BSA 1 vial/100 µg -20°C 8 Sample Preparation ASSAY PROTOCOL 9 Performing the Assay If any of the items listed above are damaged or missing, please contact our Customer Service department at (800) 364-9897 or (734) 971-3335. We cannot ANALYSIS 12 Performance Characteristics accept any returns without prior authorization. RESOURCES 14 Troubleshooting 14 References WARNING: THIS PRODUCT IS FOR RESEARCH ONLY - NOT FOR HUMAN OR VETERINARY DIAGNOSTIC OR THERAPEUTIC USE. 15 Notes ! 15 Warranty and Limitation of Remedy Safety Data This material should be considered hazardous until further information becomes available. Do not ingest, inhale, get in eyes, on skin, or on clothing. Wash thoroughly after handling. Before use, the user must review the complete Safety Data Sheet, which has been sent via email to your institution. GENERAL INFORMATION 3 Precautions Materials Needed But Not Supplied Please read these instructions carefully before beginning this assay. 1. Microcentrifuge tubes (1.5 ml) 2. -
Hyperammonemia, Hyperornithinemia
Hyperammonemia Hyperornithinemia Homocitrullinuria Syndrome (HHH) Background Hyperornithinemia-Hyperammonemia-Homocitrullinuria (HHH) Syndrome was first described in 1969. In affected patients, plasma Ornithine is found to be dramatically elevated. Hyperammonemia is chronically present, but worsens postprandially. The etiology is a deficiency of a mitochondrial carrier protein that normally functions to transport Ornithine into the mitochondria as part of the urea cycle. When transport is defective, Ornithine accumulates in the cytosol and the urea cycle is impaired, resulting in hyperammonemia. The ORNT 1 gene that codes for the transport protein is located on chromosome 13, and several mutations have been identified in affected patients. Clinical HHH Syndrome may present at birth, during childhood or even adulthood. Newborns who are breast fed usually have an uneventful beginning with intermittent hyper-ammonemia. Infants on high protein formula or foods may vomit with feeding, refuse to eat, become lethargic or develop hyperammonemic coma. Most affected patients exhibit some symptoms, such as lethargy, vomiting, ataxia or chroeoathetosis, impaired growth and delayed development. Seizures are often reported. Mild to profound mental retarda-tion is usually apparent by childhood. Over time, patients will gravitate to a diet low in milk and meat during childhood. Testing Newborn screening of dried blood spots using tandem mass spectrometry (MS/MS) is capable of identifying and quantitating Ornithine. HHH Syndrome patients have Ornithine levels five to ten times normal. Alanine may be elevated. Hyperammonemia occurs postprandially and is chronically elevated on a high protein diet, but may be normal when fasting. Urine organic acid analysis will reveal elevated Orotic Acid while urine amino acid analysis finds elevated Homocitrulline, a metabolite of Ornithine. -
Amino Acid Neurotransmitter Levels in the Cerebral Cortex of Mice Receiving Imipenem/Cilastatin -Lack of Excitotoxicity in the Central Nervous System
Tr. J. of Medical Sciences 28 (1998) 495-498 © TÜBİTAK Mete AKISÜ1 Amino Acid Neurotransmitter Levels in the Nilgün KÜLTÜRSAY1 Canan ÇOKER2 Cerebral Cortex of Mice Receiving Çiler AKISÜ3 Imipenem/Cilastatin -Lack of Excitotoxicity in the Meral BAKA4 Central Nervous System Received: October 01, 1996 Abstract: Imipenem, a very potent Imipenem/cilastatine (I/C) or saline solution carbapenem derivative beta-lactam antibiotic, intraperitoneally for 7 days. All animals in the has recently found a major place in the excessive dose group showed seizure-like treatment of antibiotic-resistant nosocomial acivity with ataxia and loss of gait. However, infections. However, a convulsive side effect no differences in aspartate, glumatate, is seen in 0.2-3 percent of patients. Although glycine or GABA levels were seen on gas it is suggested that this effect is due to the chromatographic evaluation of the cerebral inhibition of gamma-aminobutyric acid cortexes of all three groups of animals, which (GABA) mediated inhibitory transmission, no were dispatched on the 7th day. Therefore it study has been reported so far showing its is suggested that imipenem exerts its effect on the cerebral cortex free inhibitory convulsive effect without causing any change and excitatory amino acid levels. in neurotansmitter levels of barin, possibly by effecting the neuronal receptors directly. Department of 1Pediatrics, 2Research Twenty-one male TO albino mice were Laboratory, 3Medical Parasitology, 4Medical divided into three equal groups and given Histology, Faculty of Medicine Ege University, therapeutic (40 mg/kg/day) or excessive Key Words: Amino acid, imipenem, mice, İzmir-Turkey (500 mg/kg/day) doses of neurotoxicity. -
Brain Ureido Degenerative Protein Modifications Are Associated With
Gallart-Palau et al. Journal of Neuroinflammation (2017) 14:175 DOI 10.1186/s12974-017-0946-y RESEARCH Open Access Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimer’s disease with cerebrovascular disease Xavier Gallart-Palau, Aida Serra, Benjamin Sian Teck Lee, Xue Guo and Siu Kwan Sze* Abstract Background: Brain degenerative protein modifications (DPMs) are associated with the apparition and progression of dementia, and at the same time, Alzheimer’s disease with cerebrovascular disease (AD + CVD) is the most prevalent form of dementia in the elder population. Thus, understanding the role(s) of brain DPMs in this dementia subtype may provide novel insight on the disease pathogenesis and may aid on the development of novel diagnostic and therapeutic tools. Two essential DPMs known to promote inflammation in several human diseases are the ureido DPMs (uDPMs) arginine citrullination and lysine carbamylation, although they have distinct enzymatic and non-enzymatic origins, respectively. Nevertheless, the implication of uDPMs in the neuropathology of dementia remains poorly understood. Methods: In this study, we use the state-of-the-art, ultracentrifugation-electrostatic repulsion hydrophilic interaction chromatography (UC-ERLIC)-coupled mass spectrometry technology to undertake a comparative characterization of uDPMs in the soluble and particulate postmortem brain fractionsofsubjectsdiagnosed with AD + CVD and age-matched controls. Results: An increase in the formation of uDPMs was observed in all the profiled AD + CVD brains. Citrulline-containing proteins were found more abundant in the soluble fraction of AD + CVD whereas homocitrulline-containing proteins were preferentially abundant in the particulate fraction of AD + CVD brains.