Comparisons Between the Biological Characteristics of Three Co-Occurring and Reef-Dwelling Labrid Species at Two Different Latit
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
A Practical Handbook for Determining the Ages of Gulf of Mexico And
A Practical Handbook for Determining the Ages of Gulf of Mexico and Atlantic Coast Fishes THIRD EDITION GSMFC No. 300 NOVEMBER 2020 i Gulf States Marine Fisheries Commission Commissioners and Proxies ALABAMA Senator R.L. “Bret” Allain, II Chris Blankenship, Commissioner State Senator District 21 Alabama Department of Conservation Franklin, Louisiana and Natural Resources John Roussel Montgomery, Alabama Zachary, Louisiana Representative Chris Pringle Mobile, Alabama MISSISSIPPI Chris Nelson Joe Spraggins, Executive Director Bon Secour Fisheries, Inc. Mississippi Department of Marine Bon Secour, Alabama Resources Biloxi, Mississippi FLORIDA Read Hendon Eric Sutton, Executive Director USM/Gulf Coast Research Laboratory Florida Fish and Wildlife Ocean Springs, Mississippi Conservation Commission Tallahassee, Florida TEXAS Representative Jay Trumbull Carter Smith, Executive Director Tallahassee, Florida Texas Parks and Wildlife Department Austin, Texas LOUISIANA Doug Boyd Jack Montoucet, Secretary Boerne, Texas Louisiana Department of Wildlife and Fisheries Baton Rouge, Louisiana GSMFC Staff ASMFC Staff Mr. David M. Donaldson Mr. Bob Beal Executive Director Executive Director Mr. Steven J. VanderKooy Mr. Jeffrey Kipp IJF Program Coordinator Stock Assessment Scientist Ms. Debora McIntyre Dr. Kristen Anstead IJF Staff Assistant Fisheries Scientist ii A Practical Handbook for Determining the Ages of Gulf of Mexico and Atlantic Coast Fishes Third Edition Edited by Steve VanderKooy Jessica Carroll Scott Elzey Jessica Gilmore Jeffrey Kipp Gulf States Marine Fisheries Commission 2404 Government St Ocean Springs, MS 39564 and Atlantic States Marine Fisheries Commission 1050 N. Highland Street Suite 200 A-N Arlington, VA 22201 Publication Number 300 November 2020 A publication of the Gulf States Marine Fisheries Commission pursuant to National Oceanic and Atmospheric Administration Award Number NA15NMF4070076 and NA15NMF4720399. -
Age and Growth Rate Variation Influence the Functional Relationship Between Somatic and Otolith Size
Canadian Journal of Fisheries and Aquatic Sciences Age and growth rate variation influence the functional relationship between somatic and otolith size Journal: Canadian Journal of Fisheries and Aquatic Sciences Manuscript ID cjfas-2015-0471.R2 Manuscript Type: Article Date Submitted by the Author: 20-Jul-2016 Complete List of Authors: Ashworth, Eloise; Murdoch University, School of Veterinary and Life Sciences Hall, Norman; Western Australian Fisheries and Marine Research Laboratories,Draft Department of Fisheries Hesp, Alex; Western Australian Fisheries and Marine Research Laboratories, Department of Fisheries Coulson, Peter; Murdoch University, School of Veterinary and Life Sciences Potter, Ian; Murdoch University, School of Veterinary and Life Sciences somatic and otolith growths, length-otolith size relationship, correlated Keyword: errors in variables, bivariate distribution, age and growth effects https://mc06.manuscriptcentral.com/cjfas-pubs Page 1 of 79 Canadian Journal of Fisheries and Aquatic Sciences 1 Age and growth rate variation influence the functional relationship 2 between somatic and otolith size 3 Eloïse C. Ashworth a, Norman G. Hall ab , S. Alex Hesp b, Peter G. Coulson a and Ian C. Potter a. 4 a 5 Centre for Fish and Fisheries Research, School of Veterinary and Life Sciences, Murdoch 6 University, 90 South Street, Western Australia 6150, Australia. b 7 Western Australian Fisheries and Marine Research Laboratories, Department of Fisheries, 8 Post Office Box 20, North Beach, Western Australia 6920, Australia. 9 10 Corresponding author: [email protected] 1 https://mc06.manuscriptcentral.com/cjfas-pubs Canadian Journal of Fisheries and Aquatic Sciences Page 2 of 79 11 Abstract 12 Curves describing the length-otolith size relationships for juveniles and adults of six fish 13 species with widely differing biological characteristics were fitted simultaneously to fish 14 length and otolith size at age, assuming that deviations from those curves are correlated rather 15 than independent. -
New Zealand Fishes a Field Guide to Common Species Caught by Bottom, Midwater, and Surface Fishing Cover Photos: Top – Kingfish (Seriola Lalandi), Malcolm Francis
New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing Cover photos: Top – Kingfish (Seriola lalandi), Malcolm Francis. Top left – Snapper (Chrysophrys auratus), Malcolm Francis. Centre – Catch of hoki (Macruronus novaezelandiae), Neil Bagley (NIWA). Bottom left – Jack mackerel (Trachurus sp.), Malcolm Francis. Bottom – Orange roughy (Hoplostethus atlanticus), NIWA. New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing New Zealand Aquatic Environment and Biodiversity Report No: 208 Prepared for Fisheries New Zealand by P. J. McMillan M. P. Francis G. D. James L. J. Paul P. Marriott E. J. Mackay B. A. Wood D. W. Stevens L. H. Griggs S. J. Baird C. D. Roberts‡ A. L. Stewart‡ C. D. Struthers‡ J. E. Robbins NIWA, Private Bag 14901, Wellington 6241 ‡ Museum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6011Wellington ISSN 1176-9440 (print) ISSN 1179-6480 (online) ISBN 978-1-98-859425-5 (print) ISBN 978-1-98-859426-2 (online) 2019 Disclaimer While every effort was made to ensure the information in this publication is accurate, Fisheries New Zealand does not accept any responsibility or liability for error of fact, omission, interpretation or opinion that may be present, nor for the consequences of any decisions based on this information. Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries website at http://www.mpi.govt.nz/news-and-resources/publications/ A higher resolution (larger) PDF of this guide is also available by application to: [email protected] Citation: McMillan, P.J.; Francis, M.P.; James, G.D.; Paul, L.J.; Marriott, P.; Mackay, E.; Wood, B.A.; Stevens, D.W.; Griggs, L.H.; Baird, S.J.; Roberts, C.D.; Stewart, A.L.; Struthers, C.D.; Robbins, J.E. -
Assessing the Effectiveness of Surrogates for Conserving Biodiversity in the Port Stephens-Great Lakes Marine Park
Assessing the effectiveness of surrogates for conserving biodiversity in the Port Stephens-Great Lakes Marine Park Vanessa Owen B Env Sc, B Sc (Hons) School of the Environment University of Technology Sydney Submitted in fulfilment for the requirements of the degree of Doctor of Philosophy September 2015 Certificate of Original Authorship I certify that the work in this thesis has not been previously submitted for a degree nor has it been submitted as part of requirements for a degree except as fully acknowledged within the text. I also certify that the thesis has been written by me. Any help that I have received in my research work and preparation of the thesis itself has been acknowledged. In addition, I certify that all information sources and literature used as indicated in the thesis. Signature of Student: Date: Page ii Acknowledgements I thank my supervisor William Gladstone for invaluable support, advice, technical reviews, patience and understanding. I thank my family for their encouragement and support, particularly my mum who is a wonderful role model. I hope that my children too are inspired to dream big and work hard. This study was conducted with the support of the University of Newcastle, the University of Technology Sydney, University of Sydney, NSW Office of the Environment and Heritage (formerly Department of Environment Climate Change and Water), Marine Park Authority NSW, NSW Department of Primary Industries (Fisheries) and the Integrated Marine Observing System (IMOS) program funded through the Department of Industry, Climate Change, Science, Education, Research and Tertiary Education. The sessile benthic assemblage fieldwork was led by Dr Oscar Pizarro and undertaken by the University of Sydney’s Australian Centre for Field Robotics. -
Appendices Appendices
APPENDICES APPENDICES APPENDIX 1 – PUBLICATIONS SCIENTIFIC PAPERS Aidoo EN, Ute Mueller U, Hyndes GA, and Ryan Braccini M. 2015. Is a global quantitative KL. 2016. The effects of measurement uncertainty assessment of shark populations warranted? on spatial characterisation of recreational fishing Fisheries, 40: 492–501. catch rates. Fisheries Research 181: 1–13. Braccini M. 2016. Experts have different Andrews KR, Williams AJ, Fernandez-Silva I, perceptions of the management and conservation Newman SJ, Copus JM, Wakefield CB, Randall JE, status of sharks. Annals of Marine Biology and and Bowen BW. 2016. Phylogeny of deepwater Research 3: 1012. snappers (Genus Etelis) reveals a cryptic species pair in the Indo-Pacific and Pleistocene invasion of Braccini M, Aires-da-Silva A, and Taylor I. 2016. the Atlantic. Molecular Phylogenetics and Incorporating movement in the modelling of shark Evolution 100: 361-371. and ray population dynamics: approaches and management implications. Reviews in Fish Biology Bellchambers LM, Gaughan D, Wise B, Jackson G, and Fisheries 26: 13–24. and Fletcher WJ. 2016. Adopting Marine Stewardship Council certification of Western Caputi N, de Lestang S, Reid C, Hesp A, and How J. Australian fisheries at a jurisdictional level: the 2015. Maximum economic yield of the western benefits and challenges. Fisheries Research 183: rock lobster fishery of Western Australia after 609-616. moving from effort to quota control. Marine Policy, 51: 452-464. Bellchambers LM, Fisher EA, Harry AV, and Travaille KL. 2016. Identifying potential risks for Charles A, Westlund L, Bartley DM, Fletcher WJ, Marine Stewardship Council assessment and Garcia S, Govan H, and Sanders J. -
Parks Victoria Technical Series No
Deakin Research Online This is the published version: Barton, Jan, Pope, Adam and Howe, Steffan 2012, Marine protected areas of the Flinders and Twofold Shelf bioregions Parks Victoria, Melbourne, Vic. Available from Deakin Research Online: http://hdl.handle.net/10536/DRO/DU:30047221 Reproduced with the kind permission of the copyright owner. Copyright: 2012, Parks Victoria. Parks Victoria Technical Paper Series No. 79 Marine Natural Values Study (Vol 2) Marine Protected Areas of the Flinders and Twofold Shelf Bioregions Jan Barton, Adam Pope and Steffan Howe* School of Life & Environmental Sciences Deakin University *Parks Victoria August 2012 Parks Victoria Technical Series No. 79 Flinders and Twofold Shelf Bioregions Marine Natural Values Study EXECUTIVE SUMMARY Along Victoria’s coastline there are 30 Marine Protected Areas (MPAs) that have been established to protect the state’s significant marine environmental and cultural values. These MPAs include 13 Marine National Parks (MNPs), 11 Marine Sanctuaries (MSs), 3 Marine and Coastal Parks, 2 Marine Parks, and a Marine Reserve, and together these account for 11.7% of the Victorian marine environment. The highly protected Marine National Park System, which is made up of the MNPs and MSs, covers 5.3% of Victorian waters and was proclaimed in November 2002. This system has been designed to be representative of the diversity of Victoria’s marine environment and aims to conserve and protect ecological processes, habitats, and associated flora and fauna. The Marine National Park System is spread across Victoria’s five marine bioregions with multiple MNPs and MSs in each bioregion, with the exception of Flinders bioregion which has one MNP. -
Biology, Stock Status and Management Summaries for Selected Fish Species in South-Western Australia
Fisheries Research Report No. 242, 2013 Biology, stock status and management summaries for selected fish species in south-western Australia Claire B. Smallwood, S. Alex Hesp and Lynnath E. Beckley Fisheries Research Division Western Australian Fisheries and Marine Research Laboratories PO Box 20 NORTH BEACH, Western Australia 6920 Correct citation: Smallwood, C. B.; Hesp, S. A.; and Beckley, L. E. 2013. Biology, stock status and management summaries for selected fish species in south-western Australia. Fisheries Research Report No. 242. Department of Fisheries, Western Australia. 180pp. Disclaimer The views and opinions expressed in this publication are those of the authors and do not necessarily reflect those of the Department of Fisheries Western Australia. While reasonable efforts have been made to ensure that the contents of this publication are factually correct, the Department of Fisheries Western Australia does not accept responsibility for the accuracy or completeness of the contents, and shall not be liable for any loss or damage that may be occasioned directly or indirectly through the use of, or reliance on, the contents of this publication. Fish illustrations Illustrations © R. Swainston / www.anima.net.au We dedicate this guide to the memory of our friend and colleague, Ben Chuwen Department of Fisheries 3rd floor SGIO Atrium 168 – 170 St Georges Terrace PERTH WA 6000 Telephone: (08) 9482 7333 Facsimile: (08) 9482 7389 Website: www.fish.wa.gov.au ABN: 55 689 794 771 Published by Department of Fisheries, Perth, Western Australia. Fisheries Research Report No. 242, March 2013. ISSN: 1035 - 4549 ISBN: 978-1-921845-56-7 ii Fisheries Research Report No.242, 2013 Contents ACKNOWLEDGEMENTS ............................................................................................... -
Norfolk Island Reef Health April 12Th 2021 SIMS
Norfolk Island Lagoonal Reef Ecosystem Health Assessment 2020-2021 CONTENTS Executive Synopsis….....................................................................................................................5 Comprehensive Executive Summary..............................................................................................5 Section 1. Lagoonal water quality and ocean temperatures 2020-2021 ……………………………..10-29 Summary findings……………………………………………………………………………….……………………………….……………………………10 • Water Quality and Nutrient Availability • Sea Surface Temperature (SST) Conditions • Norfolk Island as a Regional Virtual Station • Water Flow and Tidal Currents • Sediment Organic Matter Content Section 2. Benthic cover Emily Bay, Slaughter Bay and Cemetery Bay 2020-2021………………30-40 Summary findings……………………………………………………………………………….…………………………….……………………………...30 • Benthic Cover Assessment for Emily Bay, Slaughter Bay and Cemetery Bay 2021 • Historical Comparison: 1988 vs. 2020 Benthic cover • Algal diversity surveys December 2020 • Fish diversity surveys December 2020 and April 2021 Section 3. Biological indicators of coral health Coral bleaching March 2020 Emily Bay and Slaughter Bay Norfolk Island………………………..…41-51 Norfolk Island Lagoonal Coral Reef Health Assessment 2020 - 2021 …………………….……………………………………..41 Section 4. Management considerations and proposed tools………………………………………………52-54 • Summary of findings and associated management considerations • Proposed outline for coral identification and coral health card • Conclusions Section 5. Review of -
Dynamic Distributions of Coastal Zooplanktivorous Fishes
Dynamic distributions of coastal zooplanktivorous fishes Matthew Michael Holland A thesis submitted in fulfilment of the requirements for a degree of Doctor of Philosophy School of Biological, Earth and Environmental Sciences Faculty of Science University of New South Wales, Australia November 2020 4/20/2021 GRIS Welcome to the Research Alumni Portal, Matthew Holland! You will be able to download the finalised version of all thesis submissions that were processed in GRIS here. Please ensure to include the completed declaration (from the Declarations tab), your completed Inclusion of Publications Statement (from the Inclusion of Publications Statement tab) in the final version of your thesis that you submit to the Library. Information on how to submit the final copies of your thesis to the Library is available in the completion email sent to you by the GRS. Thesis submission for the degree of Doctor of Philosophy Thesis Title and Abstract Declarations Inclusion of Publications Statement Corrected Thesis and Responses Thesis Title Dynamic distributions of coastal zooplanktivorous fishes Thesis Abstract Zooplanktivorous fishes are an essential trophic link transferring planktonic production to coastal ecosystems. Reef-associated or pelagic, their fast growth and high abundance are also crucial to supporting fisheries. I examined environmental drivers of their distribution across three levels of scale. Analysis of a decade of citizen science data off eastern Australia revealed that the proportion of community biomass for zooplanktivorous fishes peaked around the transition from sub-tropical to temperate latitudes, while the proportion of herbivores declined. This transition was attributed to high sub-tropical benthic productivity and low temperate planktonic productivity in winter. -
Recreational Fishing Guide 2021
Department of Primary Industries and Regional Development Recreational fishing guide 2021 New rules apply from 1 July 2021 see page 3 for details Includes Statewide bag and size limits for Western Australia, and Recreational Fishing from Boat Licence information Published June 2021 Page i Important disclaimer The Director General of the Department of Primary Industries and Regional Development (DPIRD) and the State of Western Australia accept no liability whatsoever by reason of negligence or otherwise arising from the use or release of this information or any part of it. This publication is to provide assistance or information. It is only a guide and does not replace the Fish Resources Management Act 1994 or the Fish Resources Management Regulations 1995. It cannot be used as a defence in a court of law. The information provided is current at the date of printing but may be subject to change. For the most up-to-date information on fishing and full details of legislation contact select DPIRD offices or visit dpird.wa.gov.au Copyright © State of Western Australia (Department of Primary Industries and Regional Development) 2021 Front cover photo: Tourism WA Department of Primary Industries and Regional Development Gordon Stephenson House, 140 William Street, Perth WA 6000 +61 1300 374 731 [email protected] dpird.wa.gov.au Page ii Contents Fish for the future .............................................2 Using this guide .................................................2 Changes to the rules – 2021 .............................3 -
Longterm Shifts in Abundance and Distribution of a Temperate Fish Fauna
Global Ecology and Biogeography, (Global Ecol. Biogeogr.) (2011) 20, 58–72 RESEARCH Long-term shifts in abundance and PAPER distribution of a temperate fish fauna: a response to climate change and fishing practicesgeb_575 58..72 Peter R. Last1,2*, William T. White1,2, Daniel C. Gledhill1,2, Alistair J. Hobday1,2, Rebecca Brown3, Graham J. Edgar3 and Gretta Pecl3 1Climate Adaptation Flagship, CSIRO Marine ABSTRACT and Atmospheric Research, GPO Box 1538, Aim South-eastern Australia is a climate change hotspot with well-documented Hobart TAS 7001, Australia, 2Wealth from Oceans Flagship, CSIRO Marine and recent changes in its physical marine environment. The impact on and temporal Atmospheric Research, GPO Box 1538, Hobart responses of the biota to change are less well understood, but appear to be due to TAS 7001, Australia, 3Tasmanian Aquaculture influences of climate, as well as the non-climate related past and continuing human and Fisheries Institute, Private Bag 49, Hobart impacts. We attempt to resolve the agents of change by examining major temporal TAS 7001, Australia and distributional shifts in the fish fauna and making a tentative attribution of causal factors. Location Temperate seas of south-eastern Australia. Methods Mixed data sources synthesized from published accounts, scientific surveys, spearfishing and angling competitions, commercial catches and underwa- ter photographic records, from the ‘late 1800s’ to the ‘present’, were examined to determine shifts in coastal fish distributions. Results Forty-five species, representing 27 families (about 30% of the inshore fish families occurring in the region), exhibited major distributional shifts thought to be climate related. These are distributed across the following categories: species previously rare or unlisted (12), with expanded ranges (23) and/or abundance increases (30), expanded populations in south-eastern Tasmania (16) and extra- limital vagrants (4).