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Genome Sequence Analysis of Auricularia Heimuer Combined with Genetic Linkage Map
Journal of Fungi Article Genome Sequence Analysis of Auricularia heimuer Combined with Genetic Linkage Map Ming Fang 1, Xiaoe Wang 2, Ying Chen 2, Peng Wang 2, Lixin Lu 2, Jia Lu 2, Fangjie Yao 1,2,* and Youmin Zhang 1,* 1 Lab of genetic breeding of edible mushromm, Horticultural, College of Horticulture, Jilin Agricultural University, Changchun 130118, China; [email protected] 2 Engineering Research Centre of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun 130118, China; [email protected] (X.W.); [email protected] (Y.C.); [email protected] (P.W.); [email protected] (L.L.); [email protected] (J.L.) * Correspondence: [email protected] (F.Y.); [email protected] (Y.Z.) Received: 3 March 2020; Accepted: 12 March 2020; Published: 16 March 2020 Abstract: Auricularia heimuer is one of the most popular edible fungi in China. In this study, the whole genome of A. heimuer was sequenced on the Illumina HiSeq X system and compared with other mushrooms genomes. As a wood-rotting fungus, a total of 509 carbohydrate-active enzymes (CAZymes) were annotated in order to explore its potential capabilities on wood degradation. The glycoside hydrolases (GH) family genes in the A. heimuer genome were more abundant than the genes in the other 11 mushrooms genomes. The A. heimuer genome contained 102 genes encoding class III, IV, and V ethanol dehydrogenases. Evolutionary analysis based on 562 orthologous single-copy genes from 15 mushrooms showed that Auricularia formed an early independent branch of Agaricomycetes. The mating-type locus of A. heimuer was located on linkage group 8 by genetic linkage analysis. -
Vaginal Yeast Infection in Patients Admitted to Al-Azhar University Hospital, Assiut, Egypt
Journal of Basic & Applied Mycology (Egypt) 4 (2013): 21-32 © 2010 by The Society of Basic & Applied Mycology (EGYPT) 21 Vaginal yeast infection in patients admitted to Al-Azhar University Hospital, Assiut, Egypt A. M. Moharram¹,*, Manal G. Abdel-Ati² and Eman O. M. Othman¹ ¹Department of Botany and Microbiology, Faculty of Science, *Corresponding author: e-mail: Assiut University [email protected] ²Department of Obstetrics and Gynecology, Faculty of Medicine, Received 24/9/2013, Accepted Al-Azhar University, Assiut, Egypt 30/10/2013 _______________________________________________________________________________________ Abstract: In the present study, 145 women were clinically examined during the period from December 2011 to July 2012 for vaginal yeast infection. Direct microscopy and culturing of vaginal swabs revealed that only 93 cases (64.1 %) were confirmed to be affected by yeasts. The majority of patients were 21-40 years old representing 70% of the positive cases. Yeast infection was more encountered in women receiving oral contraceptives (40%) than in those complaining of diabetes mellitus (25%) or treated with corticosteroids (17%). Phenotypic and genotypic characterization of yeast isolates showed that Candida albicans was the most prevalent species affecting 45.2% of patients, followed by C. krusei and C. tropicalis (20.4 % and 10.8% respectively). C. glabrata and C. parapsilosis were rare (3.3% and 1.1% respectively). Rhodotorula mucilaginosa and Geotrichum candidum occurred in 18.3% and 1.1% of vaginal samples respectively. Protease was produced by 83 out of 93 isolates tested (89.2%) with active isolates belonging to C. albicans and C. krusei. Lipase was produced by 51.6% of isolates with active producers related to C. -
Expanding the Knowledge on the Skillful Yeast Cyberlindnera Jadinii
Journal of Fungi Review Expanding the Knowledge on the Skillful Yeast Cyberlindnera jadinii Maria Sousa-Silva 1,2 , Daniel Vieira 1,2, Pedro Soares 1,2, Margarida Casal 1,2 and Isabel Soares-Silva 1,2,* 1 Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal; [email protected] (M.S.-S.); [email protected] (D.V.); [email protected] (P.S.); [email protected] (M.C.) 2 Institute of Science and Innovation for Bio-Sustainability (IB-S), University of Minho, 4710-057 Braga, Portugal * Correspondence: [email protected]; Tel.: +351-253601519 Abstract: Cyberlindnera jadinii is widely used as a source of single-cell protein and is known for its ability to synthesize a great variety of valuable compounds for the food and pharmaceutical industries. Its capacity to produce compounds such as food additives, supplements, and organic acids, among other fine chemicals, has turned it into an attractive microorganism in the biotechnology field. In this review, we performed a robust phylogenetic analysis using the core proteome of C. jadinii and other fungal species, from Asco- to Basidiomycota, to elucidate the evolutionary roots of this species. In addition, we report the evolution of this species nomenclature over-time and the existence of a teleomorph (C. jadinii) and anamorph state (Candida utilis) and summarize the current nomenclature of most common strains. Finally, we highlight relevant traits of its physiology, the solute membrane transporters so far characterized, as well as the molecular tools currently available for its genomic manipulation. -
The Flora Mycologica Iberica Project Fungi Occurrence Dataset
A peer-reviewed open-access journal MycoKeys 15: 59–72 (2016)The Flora Mycologica Iberica Project fungi occurrence dataset 59 doi: 10.3897/mycokeys.15.9765 DATA PAPER MycoKeys http://mycokeys.pensoft.net Launched to accelerate biodiversity research The Flora Mycologica Iberica Project fungi occurrence dataset Francisco Pando1, Margarita Dueñas1, Carlos Lado1, María Teresa Telleria1 1 Real Jardín Botánico-CSIC, Claudio Moyano 1, 28014, Madrid, Spain Corresponding author: Francisco Pando ([email protected]) Academic editor: C. Gueidan | Received 5 July 2016 | Accepted 25 August 2016 | Published 13 September 2016 Citation: Pando F, Dueñas M, Lado C, Telleria MT (2016) The Flora Mycologica Iberica Project fungi occurrence dataset. MycoKeys 15: 59–72. doi: 10.3897/mycokeys.15.9765 Resource citation: Pando F, Dueñas M, Lado C, Telleria MT (2016) Flora Mycologica Iberica Project fungi occurrence dataset. v1.18. Real Jardín Botánico (CSIC). Dataset/Occurrence. http://www.gbif.es/ipt/resource?r=floramicologicaiberi ca&v=1.18, http://doi.org/10.15468/sssx1e Abstract The dataset contains detailed distribution information on several fungal groups. The information has been revised, and in many times compiled, by expert mycologist(s) working on the monographs for the Flora Mycologica Iberica Project (FMI). Records comprise both collection and observational data, obtained from a variety of sources including field work, herbaria, and the literature. The dataset contains 59,235 records, of which 21,393 are georeferenced. These correspond to 2,445 species, grouped in 18 classes. The geographical scope of the dataset is Iberian Peninsula (Continental Portugal and Spain, and Andorra) and Balearic Islands. The complete dataset is available in Darwin Core Archive format via the Global Biodi- versity Information Facility (GBIF). -
Title Melon Aroma-Producing Yeast Isolated from Coastal
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Kyoto University Research Information Repository Melon aroma-producing yeast isolated from coastal marine Title sediment in Maizuru Bay, Japan Sutani, Akitoshi; Ueno, Masahiro; Nakagawa, Satoshi; Author(s) Sawayama, Shigeki Citation Fisheries Science (2015), 81(5): 929-936 Issue Date 2015-09 URL http://hdl.handle.net/2433/202563 The final publication is available at Springer via http://dx.doi.org/10.1007/s12562-015-0912-5.; The full-text file will be made open to the public on 28 July 2016 in Right accordance with publisher's 'Terms and Conditions for Self- Archiving'.; This is not the published version. Please cite only the published version. この論文は出版社版でありません。 引用の際には出版社版をご確認ご利用ください。 Type Journal Article Textversion author Kyoto University 1 FISHERIES SCIENCE ORIGINAL ARTICLE 2 Topic: Environment 3 Running head: Marine fungus isolation 4 5 Melon aroma-producing yeast isolated from coastal marine sediment in Maizuru Bay, 6 Japan 7 8 Akitoshi Sutani1 · Masahiro Ueno2 · Satoshi Nakagawa1· Shigeki Sawayama1 9 10 11 12 __________________________________________________ 13 (Mail) Shigeki Sawayama 14 [email protected] 15 16 1 Laboratory of Marine Environmental Microbiology, Division of Applied Biosciences, 17 Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan 18 2 Maizuru Fisheries Research Station, Field Science Education and Research Center, Kyoto 19 University, Kyoto 625-0086, Japan 1 20 Abstract Researches on marine fungi and fungi isolated from marine environments are not 21 active compared with those on terrestrial fungi. The aim of this study was isolation of novel 22 and industrially applicable fungi derived from marine environments. -
Caveats of Fungal Barcoding: a Case Study in Trametes S.Lat
Caveats of fungal barcoding: a case study in Trametes s.lat. (Basidiomycota: Polyporales) in Vietnam reveals multiple issues with mislabelled reference sequences and calls for third-party annotations Authors: Lücking, Robert, Truong, Ba Vuong, Huong, Dang Thi Thu, Le, Ngoc Han, Nguyen, Quoc Dat, et al. Source: Willdenowia, 50(3) : 383-403 Published By: Botanic Garden and Botanical Museum Berlin (BGBM) URL: https://doi.org/10.3372/wi.50.50302 BioOne Complete (complete.BioOne.org) is a full-text database of 200 subscribed and open-access titles in the biological, ecological, and environmental sciences published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Complete website, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/terms-of-use. Usage of BioOne Complete content is strictly limited to personal, educational, and non - commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Downloaded From: https://bioone.org/journals/Willdenowia on 10 Feb 2021 Terms of Use: https://bioone.org/terms-of-use Willdenowia Annals of the Botanic Garden and Botanical Museum Berlin ROBERT LÜCKING1*, BA VUONG TRUONG2, DANG THI THU HUONG3, NGOC HAN LE3, QUOC DAT NGUYEN4, VAN DAT NGUYEN5, ECKHARD VON RAAB-STRAUBE1, SARAH BOLLENDORFF1, KIM GOVERS1 & VANESSA DI VINCENZO1 Caveats of fungal barcoding: a case study in Trametes s.lat. -
Studies on Fungi Associated with Storage Rot of Carrot
DOI: 10.21276/sajb.2016.4.10.15 Scholars Academic Journal of Biosciences (SAJB) ISSN 2321-6883 (Online) Sch. Acad. J. Biosci., 2016; 4(10B):880-885 ISSN 2347-9515 (Print) ©Scholars Academic and Scientific Publisher (An International Publisher for Academic and Scientific Resources) www.saspublisher.com Original Research Article Studies on Fungi Associated with Storage Rot of Carrot (Daucus carota L.) and Radish (Raphanus sativas L.) in Odisha, India Khatoon Akhtari1, Mohapatra Ashirbad2, Satapathy Kunja Bihari1* 1Post Graduate, Department of Botany, Utkal University, Vani Vihar, Bhubaneswar-751004, Odisha, India 2Sri Jayadev College of Education and Technology, Naharkanta, Bhubaneswar-752101, Odisha, India *Corresponding author Satapathy Kunja Bihari Email: [email protected] Abstract: An extensive survey on fungi associated with post-harvest deterioration of carrot and radish storage roots was conducted during 2014-2015 in different market places of Odisha, India. Rotten samples were collected from five different localities such as Bhubaneswar, Cuttack, Jajpur, Puri, Balasore and Bhadrak. Three fungal species such as Aspergillus niger, Geotrichum candidum and Rhizopus oryzae were isolated from the rotten samples. Of these, Geotrichum candidum has highest percentage frequency of occurrence in both carrot and radish. In carrot next to Geotrichum candidum, Rhizopus oryzae showed more frequency of occurrence than Aspergillus niger but in case of radish the case is just opposite, here the percentage frequency of occurrence of Aspergillus niger was found to be more than Rhizopus oryzae. Pathogenicity tests revealed that all the isolated fungi were pathogenic to their respective host storage roots. However, Rhizopus oryzae was found to be most pathogenic on carrot leading to rapid disintegration of the infected roots while Geotrichum candidum was the least pathogenic. -
From “Viili” Towards “Termoviili”, a Novel Type of Fermented Milk
Avens Publishing Group Inviting Innovations Open Access Research Article J Food Processing & Beverages December 2013 Vol.:1, Issue:2 © All rights are reserved by Alatossava T et al. AvensJournal Publishing of Group InviFoodting Innovations Processing & From “Viili” Towards Beverages “Termoviili”, a Novel Type of Fermented Milk: Characterization Tapani Alatossava*, Ruojie Li and Patricia Munsch-Alatossava Department of Food and Environmental Sciences, University of of Growth Conditions and Factors Helsinki, Finland *Address for Correspondence Tapani Alatossava, Department of Food and Environmental Sciences, for a Co-culture of Lactobacillus P.O. Box 66, FI-00014 University of Helsinki, Helsinki, Finland, Tel: +358 9 191 58312; Fax: +358 9 191 58460; Email: [email protected] Submission: 11 November 2013 delbrueckii and Geotrichum Accepted: 12 December 2013 candidum Published: 18 December 2013 determinants for the production of fermented milk products with different tastes and flavors [1,2]. Fermented milks are beneficial to Keywords: Viili; yoghurt; Lactobacillus delbrueckii; Streptococcus thermophilus; Geotrichum candidum; formic acid; milk heat treatment human health, conditioning the intestine environment, lowering the blood pressure, and reducing the risks of bladder cancer and colon Abstract cancer [3-8]. Nowadays, the increasing consumption of fermented The traditional Northern fermented milk product “Viili” is based on milks offers a potential market for novel fermented milk products [9]. the use of a starter comprising both mesophilic lactic acid bacteria (LAB) and Geotricum candidum mold strains for milk fermentation at Globally among the commercial fermented milk products, yogurt 18 to 20°C for about 20 hours. The goal of the present study was to is the most popular product. -
Case Report. a Disseminated Infection Due to Chrysosporium Queenslandicum in a Garter Snake (Thamnophis)
mycoses 42, 107–110 (1999) Accepted: June 29, 1998 LETTER TO THE EDITOR Case Report. A disseminated infection due to Chrysosporium queenslandicum in a garter snake (Thamnophis) Eine disseminierte Chrysosporium queenslandicum-Infektion bei einer Strumpf bandnatter (Thamnophis) Th. Vissiennon1, K.-F. Schu¨ppel2, Evelin Ullrich3, Angelina F. A. Kuijpers4 Key words. Chrysosporium queenslandicum, garter snake, Thamnophis, disseminated infection. Schlu¨ sselwo¨rter. Chrysosporium queenslandicum, Strumpf bandnatter, Thamnophis, disseminierte Infektion. Summary. A male garter snake (Thamnophis) Introduction from a private terrarium was spontaneously and simultaneously infected with Chrysosporium Chrysosporium species are ubiquitous moulds queenslandicum and Geotrichum candidum. The autopsy occuring commonly in soil, decaying leaves, wood, revealed disseminated mycotic alterations in skin, animal pastures and chicken yards [1–5], related lungs and liver. Chrysosporium queenslandicum grew to dermatophytes by their gymnoascoceous perfect well at 28 °C, the optimal temperature of the states, by their keratophylic ability and by their animal. This is the first description of a accessory conidia [6]. Members of the genus rarely Chrysosporium queenslandicum infection in a garter cause diseases in humans and animals such snake. as dermatomycosis, onychomycosis, endocarditis, osteomyelitis [7, 8]. We report the first case of Zusammenfassung. Eine ma¨nnliche Strumpf- disseminated Chrysosporium queenslandicum infection bandnatter aus privater Hand erkrankte spontan concomitant with a Geotrichum candidum infection und verendete an einer Mischinfektion mit Chryso- in a garter snake. sporium queenslandicum und Geotrichum candidum. Die postmortalen Untersuchungen zeigten mykotisch bedingte Alterationen in Haut, Lunge und Leber. Die fu¨r das Wachstum des isolierten Chrysosporium Case history queenslandicum optimale Temperatur von 28 °C stimmt genau mit dem Wa¨rmebedu¨rfnis der A 3-year-old, male garter snake (Thamnophis) with Schlange u¨berein. -
Bio-Removal of Methylene Blue from Aqueous Solution by Galactomyces Geotrichum KL20A
water Article Bio-Removal of Methylene Blue from Aqueous Solution by Galactomyces geotrichum KL20A Margarita Contreras 1, Carlos David Grande-Tovar 1,* , William Vallejo 1 and Clemencia Chaves-López 2 1 Grupo de Fotoquímica y Fotobiología, Universidad del Atlántico, Puerto Colombia 81007, Colombia; [email protected] (M.C.); [email protected] (W.V.) 2 Faculty of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Via R. Balzarini 1, 64100 Teramo, Italy; [email protected] * Correspondence: [email protected]; Tel.: +57-5-3599484 Received: 23 October 2018; Accepted: 7 January 2019; Published: 6 February 2019 Abstract: The conventional treatments used to remove dyes produced as a result of different industrial activities are not completely effective. At times, some toxic by-products are generated, affecting aquatic ecosystems. In this article, an efficient use of microorganisms is presented as a biodegradation technique that is a safe environmental alternative for the benefit of aquatic life. A strain of the yeast Galactomyces geotrichum KL20A isolated from Kumis (a Colombian natural fermented milk) was used for Methylene Blue (MB) bioremoval. Two parameters of the bioremediation process were studied at three different levels: initial dye concentration and growth temperature. The maximum time of MB exposure to the yeast was 48 h. Finally, a pseudo-first-order model was used to simulate the kinetics of the process. The removal percentages of MB, by action of G. geotrichum KL20A were greater than 70% under the best operating conditions and in addition, the kinetic simulation of the experimental results indicated that the constant rate of the process was 2.2 × 10-2 h−1 with a half time for biotransformation of 31.2 h. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Structure, Bioactivities and Applications of the Polysaccharides from Tremella Fuciformis Mushroom: a Review
International Journal of Biological Macromolecules 121 (2019) 1005–1010 Contents lists available at ScienceDirect International Journal of Biological Macromolecules journal homepage: http://www.elsevier.com/locate/ijbiomac Review Structure, bioactivities and applications of the polysaccharides from Tremella fuciformis mushroom: A review Yu-ji Wu a, Zheng-xun Wei a, Fu-ming Zhang b,RobertJ.Linhardtb,c, Pei-long Sun a,An-qiangZhanga,⁎ a Department of Food Science and Technology, Zhejiang University of Technology, Hangzhou 310014, China b Department of Chemical and Biological Engineering, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA c Departments of Chemistry and Chemical Biology and Biomedical Engineering, Biological Science, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA article info abstract Article history: Tremella fuciformis is an important edible mushroom that has been widely cultivated and used as food and me- Received 8 August 2018 dicinal ingredient in traditional Chinese medicine. In the past decades, many researchers have reported that T. Received in revised form 12 September 2018 fuciformis polysaccharides (TPS) possess various bioactivities, including anti-tumor, immunomodulatory, anti- Accepted 14 October 2018 oxidation, anti-aging, repairing brain memory impairment, anti-inflammatory, hypoglycemic and Available online 18 October 2018 hypocholesterolemic. The structural characteristic of TPS has also been extensively investigated using advanced modern analytical technologies such as NMR, GC–MS, LC-MS and FT-IR to dissect the structure-activity relation- Keywords: fi Tremella fuciformis ship (SAR) of the TPS biomacromolecule. This article reviews the recent progress in the extraction, puri cation, Polysaccharide structural characterization and applications of TPS.