Energy Landscapes for Proteins: From Single Funnels to Multifunctional Systems K. R¨oder,1,† J. A. Joseph,1,† Brooke E. Husic1,2 and D. J. Wales1,∗ 1: Department of Chemistry, University of Cambridge, Lensfield Road, CB2 1EW, Cambridge, UK 2: Current affiliation: Chemistry Department, Stanford University, 333 Campus Drive, Stanford, CA 94305, USA ∗ Corresponding author:
[email protected] † These authors contributed equally. Article type: Progress Report Keywords: Energy landscapes, protein folding, multifunnel paradigm In this report we advance the hypothesis that multifunctional systems may be associated with multifunnel potential and free energy landscapes, with particular focus on biomolecules. We compare systems that exhibit single, double, and multiple competing structures, and contrast multifunnel landscapes associated with misfolded amyloidogenic oligomers, which presumably do not arise as an evolutionary target. In this context, intrinsically disordered proteins could be considered intrinsically multifunctional molecules, associated with multifunnel landscapes. Potential energy landscape theory enables biomolecules to be treated in a common framework together with self-organising and multifunctional systems based on inorganic materials, atomic and molecular clusters, crystal polymorphs, and soft matter. 1 Introduction The field of protein science underwent dramatic transformations with the groundbreaking ex- periments of Sanger[1] and Kendrew,[2] characterising the sequence of insulin and the three- dimensional structure of myoglobin,