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The Evolutionary Origins of Vertebrate Haematopoiesis: Insights from Non-Vertebrate Chordates
THE EVOLUTIONARY ORIGINS OF VERTEBRATE HAEMATOPOIESIS: INSIGHTS FROM NON-VERTEBRATE CHORDATES A thesis submitted to the University of Manchester for the degree of MPhil Evolutionary Biology in the Faculty of Life Sciences. 2015 PETER E D MILLS 2 LIST OF CONTENTS List of Contents 2 List of Figures 4 List of Abbreviations 5 Abstract 6 Declaration 7 Copyright Statement 7 Introduction 8 Haematopoiesis 11 In gnathostomes 11 In cyclostomes 18 In ascidians 20 In amphioxi 22 In sea urchins 24 In fruit flies 24 The evolution of haematopoiesis 26 Haematopoiesis and innate immune cells 26 Lymphocytes 26 Erythrocytes 27 Aims 28 The basic aim 28 Choice of genes 30 Homologue identification 31 Analysis of EST collections 31 In situ hybridisations 32 gata1/2/3 rescue experiment 34 gata1/2/3 reporter experiment 36 3 Methods 39 Homologue identification 39 Analysis of EST data 39 Collection of amphioxus embryos 40 Collection of ascidian embryos 40 Collection of zebrafish embryos 40 Cloning genes 41 Whole mount in situ hybridisations 41 Knockdown and rescue of gata1 42 gata1/2/3:mCherry reporter 42 Results Homologues in non-gnathostomes 44 Gene expression in ascidian and amphioxus embryos 48 Knockdown of gata1 and rescue with gata1/2/3 51 gata1/2/3:mCherry reporter expression 52 Discussion Non-chordate gene expression 54 Amphioxus gene expression 54 Ascidian gene expression 56 Cyclostome gene expression 59 gata1/2/3 rescue experiment 60 gata1/2/3 reporter experiment 62 Evolution of erythrocytes 63 Evolution of lymphocytes 67 Conclusion 72 References 75 (Word count: 26,246) 4 LIST OF FIGURES Figure 1 – Phylogenetic relationships between the organisms studied in this thesis. -
Skates and Rays Diversity, Exploration and Conservation – Case-Study of the Thornback Ray, Raja Clavata
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Doutoramento em Ciências do Mar 2010 UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Tese orientada por Professor Auxiliar com Agregação Leonel Serrano Gordo e Investigadora Auxiliar Ivone Figueiredo Doutoramento em Ciências do Mar 2010 The research reported in this thesis was carried out at the Instituto de Investigação das Pescas e do Mar (IPIMAR - INRB), Unidade de Recursos Marinhos e Sustentabilidade. This research was funded by Fundação para a Ciência e a Tecnologia (FCT) through a PhD grant (SFRH/BD/23777/2005) and the research project EU Data Collection/DCR (PNAB). Skates and rays diversity, exploration and conservation | Table of Contents Table of Contents List of Figures ............................................................................................................................. i List of Tables ............................................................................................................................. v List of Abbreviations ............................................................................................................. viii Agradecimentos ........................................................................................................................ -
An Introduction to the Classification of Elasmobranchs
An introduction to the classification of elasmobranchs 17 Rekha J. Nair and P.U Zacharia Central Marine Fisheries Research Institute, Kochi-682 018 Introduction eyed, stomachless, deep-sea creatures that possess an upper jaw which is fused to its cranium (unlike in sharks). The term Elasmobranchs or chondrichthyans refers to the The great majority of the commercially important species of group of marine organisms with a skeleton made of cartilage. chondrichthyans are elasmobranchs. The latter are named They include sharks, skates, rays and chimaeras. These for their plated gills which communicate to the exterior by organisms are characterised by and differ from their sister 5–7 openings. In total, there are about 869+ extant species group of bony fishes in the characteristics like cartilaginous of elasmobranchs, with about 400+ of those being sharks skeleton, absence of swim bladders and presence of five and the rest skates and rays. Taxonomy is also perhaps to seven pairs of naked gill slits that are not covered by an infamously known for its constant, yet essential, revisions operculum. The chondrichthyans which are placed in Class of the relationships and identity of different organisms. Elasmobranchii are grouped into two main subdivisions Classification of elasmobranchs certainly does not evade this Holocephalii (Chimaeras or ratfishes and elephant fishes) process, and species are sometimes lumped in with other with three families and approximately 37 species inhabiting species, or renamed, or assigned to different families and deep cool waters; and the Elasmobranchii, which is a large, other taxonomic groupings. It is certain, however, that such diverse group (sharks, skates and rays) with representatives revisions will clarify our view of the taxonomy and phylogeny in all types of environments, from fresh waters to the bottom (evolutionary relationships) of elasmobranchs, leading to a of marine trenches and from polar regions to warm tropical better understanding of how these creatures evolved. -
A Systematic Revision of the South American Freshwater Stingrays (Chondrichthyes: Potamotrygonidae) (Batoidei, Myliobatiformes, Phylogeny, Biogeography)
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 1985 A systematic revision of the South American freshwater stingrays (chondrichthyes: potamotrygonidae) (batoidei, myliobatiformes, phylogeny, biogeography) Ricardo de Souza Rosa College of William and Mary - Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Fresh Water Studies Commons, Oceanography Commons, and the Zoology Commons Recommended Citation Rosa, Ricardo de Souza, "A systematic revision of the South American freshwater stingrays (chondrichthyes: potamotrygonidae) (batoidei, myliobatiformes, phylogeny, biogeography)" (1985). Dissertations, Theses, and Masters Projects. Paper 1539616831. https://dx.doi.org/doi:10.25773/v5-6ts0-6v68 This Dissertation is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. INFORMATION TO USERS This reproduction was made from a copy of a document sent to us for microfilming. While the most advanced technology has been used to photograph and reproduce this document, the quality of the reproduction is heavily dependent upon the quality of the material submitted. The following explanation of techniques is provided to help clarify markings or notations which may appear on this reproduction. 1.The sign or “target” for pages apparently lacking from the document photographed is “Missing Pagefs)”. If it was possible to obtain the missing page(s) or section, they are spliced into the film along with adjacent pages. This may have necessitated cutting through an image and duplicating adjacent pages to assure complete continuity. -
Back Matter (PDF)
PROCEEDINGS OF THE YORKSHIRE GEOLOGICAL SOCIETY 309 INDEX TO VOLUME 55 General index unusual crinoid-coral association 301^ Lake District Boreholes Craven inliers, Yorkshire 241-61 Caradoc volcanoes 73-105 Chronostratigraphy Cretoxyrhinidae 111, 117 stratigraphical revision, Windermere Lithostratigraphy crinoid stems, N Devon 161-73 Supergroup 263-85 Localities crinoid-coral association 301-4 Lake District Batholith 16,73,99 Minerals crinoids, Derbiocrinus diversus Wright 205-7 Lake District Boundary Fault 16,100 New Taxa Cristatisporitis matthewsii 140-42 Lancashire Crummock Fault 15 faunal bands in Lower Coal Measures 26, Curvirimula spp. 28-9 GENERAL 27 Dale Barn Syncline 250 unusual crinoid-coral association 3Q1-A Acanthotriletes sp. 140 Dent Fault 257,263,268,279 Legburthwaite graben 91-2 acritarchs 243,305-6 Derbiocrinus diversus Wright 205-7 Leiosphaeridia spp. 157 algae Derbyshire, limestones 62 limestones late Triassic, near York 305-6 Diplichnites 102 foraminifera, algae and corals 287-300 in limestones 43-65,287-300 Diplopodichnus 102 micropalaeontology 43-65 origins of non-haptotypic palynomorphs Dumfries Basin 1,4,15,17 unusual crinoid-coral association 301-4 145,149,155-7 Dumfries Fault 16,17 Lingula 22,24 Alston Block 43-65 Dunbar-Oldhamstock Basin 131,133,139, magmatism, Lake District 73-105 Amphoracrinus gilbertsoni (Phillips 1836) 145,149 Manchester Museum, supplement to 301^1 dykes, Lake District 99 catalogue of fossils in Geology Dept. Anacoracidae 111-12 East Irish Sea Basin 1,4-7,8,10,12,13,14,15, 173-82 apatite -
Evolutionary Relations of Hexanchiformes Deep-Sea Sharks Elucidated by Whole Mitochondrial Genome Sequences
Hindawi Publishing Corporation BioMed Research International Volume 2013, Article ID 147064, 11 pages http://dx.doi.org/10.1155/2013/147064 Research Article Evolutionary Relations of Hexanchiformes Deep-Sea Sharks Elucidated by Whole Mitochondrial Genome Sequences Keiko Tanaka,1 Takashi Shiina,1 Taketeru Tomita,2 Shingo Suzuki,1 Kazuyoshi Hosomichi,3 Kazumi Sano,4 Hiroyuki Doi,5 Azumi Kono,1 Tomoyoshi Komiyama,6 Hidetoshi Inoko,1 Jerzy K. Kulski,1,7 and Sho Tanaka8 1 Department of Molecular Life Science, Division of Basic Medical Science and Molecular Medicine, Tokai University School of Medicine, 143 Shimokasuya, Isehara, Kanagawa 259-1143, Japan 2 Fisheries Science Center, The Hokkaido University Museum, 3-1-1 Minato-cho, Hakodate, Hokkaido 041-8611, Japan 3 Division of Human Genetics, Department of Integrated Genetics, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan 4 Division of Science Interpreter Training, Komaba Organization for Education Excellence College of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan 5 Shimonoseki Marine Science Museum, 6-1 Arcaport, Shimonoseki, Yamaguchi 750-0036, Japan 6 Department of Clinical Pharmacology, Division of Basic Clinical Science and Public Health, Tokai University School of Medicine, 143 Shimokasuya, Isehara, Kanagawa 259-1143, Japan 7 Centre for Forensic Science, The University of Western Australia, Nedlands, WA 6008, Australia 8 Department of Marine Biology, School of Marine Science and Technology, Tokai University, 3-20-1 Orido, Shimizu, Shizuoka 424-8610, Japan Correspondence should be addressed to Takashi Shiina; [email protected] Received 1 March 2013; Accepted 26 July 2013 Academic Editor: Dietmar Quandt Copyright © 2013 Keiko Tanaka et al. -
World Bank Document
Public Disclosure Authorized t1 1 |S.. S t g - g s 3 8 g g i sII Public Disclosure Authorized jiI II. Public Disclosure Authorized Public Disclosure Authorized Currency B9tuivalents The official monetary unit is the Syli (GS) Syli 1 = US$0.04 USS1 Syll 23 Abbreviations and Acronyms BD barrels per day Glh gigawtt hours NV megaatts toe tons of oil equivalent Hydrorente Agency in charge of retail gasoline sales HQI Hydro Quibec International Importex Agency in charge of oil imports MI=3K Ministry of Energy aud Konkovurf NW; JNnistry of Nimes and Geology ONIE Office National des Hydrocarbures PCIAC Petro Canada International Assistance Corporation SGH Socigt6 Guineenne des Hydrocarbures SRE Societ-e ationale d'Electricite SOGUIP Societe Guineene des Petroles FOR OMCUIL USE ONLY THE REVOLUTIONARYPEOPLE'S REPUBLIC OF GUINEA PETROLEUMEXPLORATION PROMOTION PROJECT Credit and Project Summary Borrower: Revolutionary People's Republic of Guinea Amount: SDR 7.7 million (US$8.0 million equivalent) * Terms: Standard Project The project would assist the Ministry of Mines and Description: Geology in promoting available acreage in the country to international oil companies for exploration. It would include (i) seismic surveys on two zones offshore 'ii) geological field surveys on the onshore Bove basin,(iii) technical assistance by exploration con- sultants to develop and implement a promotion strategy and accounting assistance in respect of exploration activities; (iv) technical, economic and legal training; and (v) meterials and equipment needed in execution of the project. It would assist the Ministry of Energy and Konkoure in improving the reliability of Conakry's electrical service by an extension of an ongoing technical assistance contract for the electric power utility, SHE. -
(Chondrichthyes, Elasmobranchii) from the Middle Jurassic of SW Germany and NW Poland
Neoselachian remains (Chondrichthyes, Elasmobranchii) from the Middle Jurassic of SW Germany and NW Poland JÜRGEN KRIWET Kriwet, J. 2003. Neoselachian remains (Chondrichthyes, Elasmobranchii) from the Middle Jurassic of SW Germany and NW Poland. Acta Palaeontologica Polonica 48 (4): 583–594. New neoselachian remains from the Middle Jurassic of SW Germany and NW Poland are described. The locality of Weilen unter den Rinnen in SW Germany yielded only few orectolobiform teeth from the Aalenian representing at least one new genus and species, Folipistrix digitulus, which is assigned to the orectolobiforms and two additional orectolobi− form teeth of uncertain affinities. The tooth morphology of Folipistrix gen. nov. indicates a cutting dentition and suggests specialised feeding habits. Neoselachians from Bathonian and Callovian drill core samples from NW Poland produced numerous selachian remains. Most teeth are damaged and only the crown is preserved. Few identifiable teeth come from uppermost lower to lower middle Callovian samples. They include a new species, Synechodus prorogatus, and rare teeth attributed to Palaeobrachaelurus sp., Pseudospinax? sp., Protospinax cf. annectans Woodward, 1919, two additional but unidentifiable Protospinax spp. and Squalogaleus sp. Scyliorhinids are represented only by few isolated tooth crowns. No batoid remains have been recovered. The two assemblages contribute to the knowledge about early neoselachian distribution and diversity. Key words: Chondrichthyes, Neoselachii, Jurassic, Germany, Poland, taxonomy, diversity. Jürgen Kriwet [[email protected]], Department of Earth Sciences, University of Bristol, Wills Memorial Building, Queen’s Road, Bristol BS8 1RJ, United Kingdom. Introduction Woodward 1889; Frass 1896; Thies 1992, 1993), Northern France (Duffin and Ward 1993), Luxembourg (Delsate Neoselachii is a well−defined monophyletic clade and repre− 1995), Belgium (Delsate and Thies 1995; Delsate and Gode− sents one of the most successful groups of selachians. -
Chondrichthyes: Neoselachii) in the Jurassic of Normandy
FIRST MENTION OF THE FAMILY PSEUDONOTIDANIDAE (CHONDRICHTHYES: NEOSELACHII) IN THE JURASSIC OF NORMANDY by Gilles CUNY (1) and Jérôme TABOUELLE (2) ABSTRACT The discovery of a tooth of cf. Pseudonotidanus sp. is reported from the Bathonian of Normandy. Its morphology supports the transfer of the species terencei from the genus Welcommia to the genus Pseudonotidanus. It also supports the idea that Pseudonotidanidae might be basal Hexanchiformes rather than Synechodontiformes. KEYWORDS Normandy, Arromanches, Jurassic, Bathonian, Chondrichthyes, Elasmobranchii, Synechodontiformes, Hexanchiformes, Pseudonotidanidae. RÉSUMÉ La découverte d’une dent de cf. Pseudonotidanus sp. est signalée dans le Bathonien de Normandie. Sa morphologie soutient le transfert de l’espèce terencei du genre Welcommia au genre Pseudonotidanus . Elle soutient également l’idée que les Pseudonotidanidae pourraient appartenir aux Hexanchiformes basaux plutôt qu’aux Synechodontiformes. MOTS-CLEFS Normandie, Arromanches, Jurassique, Bathonien, Chondrichthyes, Elasmobranchii, Synechodontiformes, Hexanchiformes, Pseudonotidanidae. References of this article: CUNY G. and TABOUELLE J. (2014) – First mention of the family Pseudonotidanidae (Chondrichthyes: Neoselachii) in the Jurassic of Normandy. Bulletin Sciences et Géologie Normandes , tome 7, p. 21-28. 1 – INTRODUCTION In 2004, Underwood and Ward erected the new family Pseudonotidanidae for sharks showing teeth with a hexanchid-like crown (compressed labio-lingually with several cusps) and a Palaeospinacid-like root (lingually -
Copyrighted Material
06_250317 part1-3.qxd 12/13/05 7:32 PM Page 15 Phylum Chordata Chordates are placed in the superphylum Deuterostomia. The possible rela- tionships of the chordates and deuterostomes to other metazoans are dis- cussed in Halanych (2004). He restricts the taxon of deuterostomes to the chordates and their proposed immediate sister group, a taxon comprising the hemichordates, echinoderms, and the wormlike Xenoturbella. The phylum Chordata has been used by most recent workers to encompass members of the subphyla Urochordata (tunicates or sea-squirts), Cephalochordata (lancelets), and Craniata (fishes, amphibians, reptiles, birds, and mammals). The Cephalochordata and Craniata form a mono- phyletic group (e.g., Cameron et al., 2000; Halanych, 2004). Much disagree- ment exists concerning the interrelationships and classification of the Chordata, and the inclusion of the urochordates as sister to the cephalochor- dates and craniates is not as broadly held as the sister-group relationship of cephalochordates and craniates (Halanych, 2004). Many excitingCOPYRIGHTED fossil finds in recent years MATERIAL reveal what the first fishes may have looked like, and these finds push the fossil record of fishes back into the early Cambrian, far further back than previously known. There is still much difference of opinion on the phylogenetic position of these new Cambrian species, and many new discoveries and changes in early fish systematics may be expected over the next decade. As noted by Halanych (2004), D.-G. (D.) Shu and collaborators have discovered fossil ascidians (e.g., Cheungkongella), cephalochordate-like yunnanozoans (Haikouella and Yunnanozoon), and jaw- less craniates (Myllokunmingia, and its junior synonym Haikouichthys) over the 15 06_250317 part1-3.qxd 12/13/05 7:32 PM Page 16 16 Fishes of the World last few years that push the origins of these three major taxa at least into the Lower Cambrian (approximately 530–540 million years ago). -
Paleogene: Paleocene) Of
Cainozoic Research, 8(1-2), pp. 13-28, December2011 Chondrichthyans from the Clayton Limestone Unit of the Midway Group (Paleogene: Paleocene) of Hot Spring County, Arkansas, USA ¹, ² Martin+A. Becker Lauren+C. Smith¹ & John+A. Chamberlain+Jr. 1 Department ofEnvironmentalScience, William Paterson University, Wayne, New Jersey 07470; e-mail: [email protected] 2 Department ofGeology, Brooklyn College andDoctoralProgram in Earth and EnvironmentalSciences, City University ofNew YorkGraduate Center, New York 10016; email:[email protected] Received 7 September 2010; revised version accepted 26 June 2011 LimestoneUnit of The Clayton the Midway Group (Paleocene) in southwestern Arkansas preserves one ofthe oldest chondrichthyan Cenozoic from the Gulf Coastal Plainofthe United assemblages yet reported States. Present are at least eight taxa, including; Odontaspis winkleriLeriche, Carcharias cf. whitei Carcharias Anomotodon 1905; (Arambourg, 1952); sp.; novus (Winkler, 1874); Cretalamnasp.; Otodus obliquus Agassiz, 1843; Hypolophodon sylvestris (White, 1931); Myliobatis dixoni Agassiz, 1843; and a chimaeridofindeterminate affiliation.Also present are lamnoid-type and carcharhinoid-type chondrichthyan vertebral centra. The Clayton chondrichthyan assem- blage derives from an outcrop locatedonly a few kilometersfrom a site exposing an assemblage ofMaastrichtianchondrichthyans from Because and the upper Arkadelphia Marl. these assemblages are closely spaced stratigraphically geographically, they provide data on chondrichthyan taxonomic turnover -
Database of Bibliography of Living/Fossil
www.shark-references.com Version 16.01.2018 Bibliography database of living/fossil sharks, rays and chimaeras (Chondrichthyes: Elasmobranchii, Holocephali) Papers of the year 2017 published by Jürgen Pollerspöck, Benediktinerring 34, 94569 Stephansposching, Germany and Nicolas Straube, Munich, Germany ISSN: 2195-6499 DOI: 10.13140/RG.2.2.32409.72801 copyright by the authors 1 please inform us about missing papers: [email protected] www.shark-references.com Version 16.01.2018 Abstract: This paper contains a collection of 817 citations (no conference abstracts) on topics related to extant and extinct Chondrichthyes (sharks, rays, and chimaeras) as well as a list of Chondrichthyan species and hosted parasites newly described in 2017. The list is the result of regular queries in numerous journals, books and online publications. It provides a complete list of publication citations as well as a database report containing rearranged subsets of the list sorted by the keyword statistics, extant and extinct genera and species descriptions from the years 2000 to 2017, list of descriptions of extinct and extant species from 2017, parasitology, reproduction, distribution, diet, conservation, and taxonomy. The paper is intended to be consulted for information. In addition, we provide data information on the geographic and depth distribution of newly described species, i.e. the type specimens from the years 1990 to 2017 in a hot spot analysis. New in this year's POTY is the subheader "biodiversity" comprising a complete list of all valid chimaeriform, selachian and batoid species, as well as a list of the top 20 most researched chondrichthyan species. Please note that the content of this paper has been compiled to the best of our abilities based on current knowledge and practice, however, possible errors cannot entirely be excluded.