The SILK Language
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Modern Programming Languages CS508 Virtual University of Pakistan
Modern Programming Languages (CS508) VU Modern Programming Languages CS508 Virtual University of Pakistan Leaders in Education Technology 1 © Copyright Virtual University of Pakistan Modern Programming Languages (CS508) VU TABLE of CONTENTS Course Objectives...........................................................................................................................4 Introduction and Historical Background (Lecture 1-8)..............................................................5 Language Evaluation Criterion.....................................................................................................6 Language Evaluation Criterion...................................................................................................15 An Introduction to SNOBOL (Lecture 9-12).............................................................................32 Ada Programming Language: An Introduction (Lecture 13-17).............................................45 LISP Programming Language: An Introduction (Lecture 18-21)...........................................63 PROLOG - Programming in Logic (Lecture 22-26) .................................................................77 Java Programming Language (Lecture 27-30)..........................................................................92 C# Programming Language (Lecture 31-34) ...........................................................................111 PHP – Personal Home Page PHP: Hypertext Preprocessor (Lecture 35-37)........................129 Modern Programming Languages-JavaScript -
Cygwin User's Guide
Cygwin User’s Guide Cygwin User’s Guide ii Copyright © Cygwin authors Permission is granted to make and distribute verbatim copies of this documentation provided the copyright notice and this per- mission notice are preserved on all copies. Permission is granted to copy and distribute modified versions of this documentation under the conditions for verbatim copying, provided that the entire resulting derived work is distributed under the terms of a permission notice identical to this one. Permission is granted to copy and distribute translations of this documentation into another language, under the above conditions for modified versions, except that this permission notice may be stated in a translation approved by the Free Software Foundation. Cygwin User’s Guide iii Contents 1 Cygwin Overview 1 1.1 What is it? . .1 1.2 Quick Start Guide for those more experienced with Windows . .1 1.3 Quick Start Guide for those more experienced with UNIX . .1 1.4 Are the Cygwin tools free software? . .2 1.5 A brief history of the Cygwin project . .2 1.6 Highlights of Cygwin Functionality . .3 1.6.1 Introduction . .3 1.6.2 Permissions and Security . .3 1.6.3 File Access . .3 1.6.4 Text Mode vs. Binary Mode . .4 1.6.5 ANSI C Library . .4 1.6.6 Process Creation . .5 1.6.6.1 Problems with process creation . .5 1.6.7 Signals . .6 1.6.8 Sockets . .6 1.6.9 Select . .7 1.7 What’s new and what changed in Cygwin . .7 1.7.1 What’s new and what changed in 3.2 . -
101 Useful Linux Commands - Haydenjames.Io
101 Useful Linux Commands - haydenjames.io Some of these commands require elevated permissions (sudo) to run. Enjoy! 1. Execute the previous command used: !! 2. Execute a previous command starting with a specific letter. Example: !s 3. Short way to copy or backup a file before you edit it. For example, copy nginx.conf cp nginx.conf{,.bak} 4. Toggle between current directory and last directory cd - 5. Move to parent (higher level) directory. Note the space! cd .. 6. Go to home directory cd ~ 7. Go to home directory cd $HOME 8. Go to home directory (when used alone) cd 9. Set permissions to 755. Corresponds to these permissions: (-rwx-r-x-r-x), arranged in this sequence: (owner-group-other) chmod 755 <filename> 10. Add execute permission to all users. chmod a+x <filename> 11. Changes ownership of a file or directory to . chown <username> 12. Make a backup copy of a file (named file.backup) cp <file> <file>.backup 13. Copy file1, use it to create file2 cp <file1> <file2> 14. Copy directory1 and all its contents (recursively) into directory2 cp -r <directory1> <directory2>/ 15. Display date date 16. Zero the sdb drive. You may want to use GParted to format the drive afterward. You need elevated permissions to run this (sudo). dd if=/dev/zero of=/dev/sdb 17. Display disk space usage df -h 18. Take detailed messages from OS and input to text file dmesg>dmesg.txt 19. Display a LOT of system information. I usually pipe output to less. You need elevated permissions to run this (sudo). -
“Linux at the Command Line” Don Johnson of BU IS&T We’Ll Start with a Sign in Sheet
“Linux at the Command Line” Don Johnson of BU IS&T We’ll start with a sign in sheet. We’ll end with a class evaluation. We’ll cover as much as we can in the time allowed; if we don’t cover everything, you’ll pick it up as you continue working with Linux. This is a hands-on, lab class; ask questions at any time. Commands for you to type are in BOLD The Most Common O/S Used By BU Researchers When Working on a Server or Computer Cluster Linux is a Unix clone begun in 1991 and written from scratch by Linus Torvalds with assistance from a loosely-knit team of hackers across the Net. 64% of the world’s servers run some variant of Unix or Linux. The Android phone and the Kindle run Linux. a set of small Linux is an O/S core programs written by written by Linus Richard Stallman and Torvalds and others others. They are the AND GNU utilities. http://www.gnu.org/ Network: ssh, scp Shells: BASH, TCSH, clear, history, chsh, echo, set, setenv, xargs System Information: w, whoami, man, info, which, free, echo, date, cal, df, free Command Information: man, info Symbols: |, >, >>, <, ;, ~, ., .. Filters: grep, egrep, more, less, head, tail Hotkeys: <ctrl><c>, <ctrl><d> File System: ls, mkdir, cd, pwd, mv, touch, file, find, diff, cmp, du, chmod, find File Editors: gedit, nedit You need a “xterm” emulation – software that emulates an “X” terminal and that connects using the “SSH” Secure Shell protocol. ◦ Windows Use StarNet “X-Win32:” http://www.bu.edu/tech/support/desktop/ distribution/xwindows/xwin32/ ◦ Mac OS X “Terminal” is already installed Why? Darwin, the system on which Apple's Mac OS X is built, is a derivative of 4.4BSD-Lite2 and FreeBSD. -
80842-Su | Cc/Led/27W/E26-E39/Mv/50K Corn Cob Sunlite
Item: 80842-SU CC/LED/27W/E26-E39/MV/50K CORN COB SUNLITE General Characteristics Bulb Corn Lamp Type Corn Cob Lamp Life Hours 50000 Hours Material Aluminium & Plastic LED Type LG5630 Base Medium (E26) Lumens Per Watt (LPW) 135.00 Life (based on 3hr/day) 45.7 Years Estimated Energy Cost $3.25 per Year Safety Rating UL Listed Ingress Protection IP64 Sunlite CC/LED/27W/E26-E39/MV/50K LED 27W (100W MHL/HPSW Electrical Characteristics Equivalent) Corn Bulb, Medium (E26), Watts 27 5000K Super White Volts 100-277 Equivalent Watts 100 LED Chip Manufacturer LG5630 Sunlite's super efficient LED corn lamps were created to Number of LEDs 84 replace the equivalent but power hungry metal halide and Power Factor 0.9 high-pressure sodium lamps. Capable of withstanding water sprays from any direction in thanks to its IP64 rating, these Temperature -40° To 140° bulbs will keep outdoor paths, back yards and many more locations illuminated for a significantly longer period of time Light Characteristics when compared to a high-pressure sodium lamp or a metal Brightness 3645 Lumens halide while also lowering your electrical usage. Color Accuracy (CRI) 85 Light Appearance Super White Color Temperature 5000K • This modern corn cob lamp produces an efficient 5000K Beam Angle 360° super white beam of 360° light at a powerful 3645 lumens • On average, this multi-volt LED corn cob lamp lasts up to Product Dimensions an astonishing 50,000 hours and features 84 energy MOL (in) 7.4 saving diodes Diameter (in) 3.65 • Ideal for all post lights, Street lights, security Lighting, high Package Dimensions (in) (W) 3.70 (H) 11.90 (D) 3.80 bay lights while also designed for indoor as well as Product Data outdoor usage. -
Unix Security Overview: 1
CIS/CSE 643: Computer Security (Syracuse University) Unix Security Overview: 1 Unix Security Overview 1 User and Group • Users – root: super user (uid = 0) – daemon: handle networks. – nobody: owns no files, used as a default user for unprivileged operations. ∗ Web browser can run with this mode. – User needs to log in with a password. The encrypted password is stored in /etc/shadow. – User information is stored in /etc/passwd, the place that was used to store passwords (not anymore). The following is an example of an entry in this file. john:x:30000:40000:John Doe:/home/john:/usr/local/bin/tcsh • Groups – Sometimes, it is more convenient if we can assign permissions to a group of users, i.e. we would like to assign permission based on groups. – A user has a primary group (listed in /etc/passwd), and this is the one associated to the files the user created. – Any user can be a member of multiple groups. – Group member information is stored in /etc/group % groups uid (display the groups that uid belongs to) – For systems that use NIS (Network Information Service), originally called Yellow Page (YP), we can get the group information using the command ypcat. % ypcat group (can display all the groups and their members) 2 File Permissions • File Permissions – The meaning of the permission bits in Unix. ∗ Owner (u), Group (g), and Others (o). ∗ Readable (r), Writable (w), and Executable (x). ∗ Example: -rwxrwxrwx (777) • Permissions on Directories: – r: the directory can be listed. – w: can create/delete a file or a directory within the directory. -
Exercise I: Basic Unix for Manipulating NGS Data
Exercise I: Basic Unix for manipulating NGS data C. Hahn, July 2014 The purpose of this exercise is to practice manipulating NGS (Next Generation Sequencing) data using simple but incredibly powerful Unix commands. Try to solve the below tasks using your Unix skills. Do not hesitate to consult Google for help!! Hints for every task can be found on page 3 below. Possible solutions are suggested on page 4. 1. Download the testdata from https://www.dropbox.com/s/wcanmej6z03yfmt/testdata_1.tar?dl=0. Create a directory (exercise_1) in your home directory and copy the archive testdata.tar from ~/Downloads/ to this directory. 2. Decompress the archive. 3. Examine the content of the data files. For basic information on fastq format please visit: http://en.wikipedia.org/wiki/FASTQ_format. With this information try to interpret the content of your data files. Do you Know what all the lines represent? a) Which quality encoding (which offset) do these files use? b) What is the header of the third read in the file? Is this a single-end (forward) or a paired-end (reverse) read? c) What is the header of the last read in the file? Is this a forward or reverse read? 4. How many lines does the file have? 5. How many reads does the file contain? 6. How many single-end (“se” also referred to as forward reads) reads and how many paired-end (“pe” also reverse reads) reads does the file contain? 7. Extract all se/pe reads and write them to separate files testdata_1.fastq and testdata_2.fastq. -
FRESHMAN GUIDE to Successful College Planning
FRESHMAN GUIDE to Successful College Planning Artwork by: Serena Walkin Ballou Senior High School Class of 2001 Graduate COPYRIGHT © 2003 DISTRICT OF COLUMBIA COLLEGE ACCESS PROGRAM. ALL RIGHTS RESERVED. PRINTED IN THE UNITED STATES OF AMERICA. FRESHMAN GUIDE TO SUCCESSFUL COLLEGE PLANNING TABLE OF CONTENTS Introduction 2 How to Contact 3 Part I Student Guide to Freshman Year 6 Section I Selecting Your High School Courses 7 Section II Attendance, Time Management, & Study Skills 10 Section III Understanding Your GPA 12 Section IV Standardized Tests 13 Section V Activities for College Bound Freshman 14 Section VI Types of Colleges 15 Section VII Activity Worksheet 16 Part II Parental Guide to Financial Planning 19 Parent Agreement 22 INTRODUCTION Welcome to DC-CAP Freshman Guide to College Planning. The purpose of this guide is to assist students in the District of Columbia Public and Public Charter High Schools who are starting their Freshman Year of high school. We hope that this handbook will be useful to you and your parents as you set out to begin the journey of college planning during your high school years. Again, we encourage students to visit their DC- CAP advisor and register with our program. Congratulations!! Welcome to your first year of high school. Follow this guide step-by-step and you will guarantee yourself SUCCESS!!!!!!! Please read this handbook with your parents and return the signed agreement form to the DC-CAP Advisor assigned to your school. What is DC-CAP? The District of Columbia College Access Program (DC-CAP) is a non-profit organization funded by Washington Area corporations and foundations dedicated to encouraging and enabling District of Columbia public and public charter high school students to enter and graduate from college. -
Useful Commands in Linux and Other Tools for Quality Control
Useful commands in Linux and other tools for quality control Ignacio Aguilar INIA Uruguay 05-2018 Unix Basic Commands pwd show working directory ls list files in working directory ll as before but with more information mkdir d make a directory d cd d change to directory d Copy and moving commands To copy file cp /home/user/is . To copy file directory cp –r /home/folder . to move file aa into bb in folder test mv aa ./test/bb To delete rm yy delete the file yy rm –r xx delete the folder xx Redirections & pipe Redirection useful to read/write from file !! aa < bb program aa reads from file bb blupf90 < in aa > bb program aa write in file bb blupf90 < in > log Redirections & pipe “|” similar to redirection but instead to write to a file, passes content as input to other command tee copy standard input to standard output and save in a file echo copy stream to standard output Example: program blupf90 reads name of parameter file and writes output in terminal and in file log echo par.b90 | blupf90 | tee blup.log Other popular commands head file print first 10 lines list file page-by-page tail file print last 10 lines less file list file line-by-line or page-by-page wc –l file count lines grep text file find lines that contains text cat file1 fiel2 concatenate files sort sort file cut cuts specific columns join join lines of two files on specific columns paste paste lines of two file expand replace TAB with spaces uniq retain unique lines on a sorted file head / tail $ head pedigree.txt 1 0 0 2 0 0 3 0 0 4 0 0 5 0 0 6 0 0 7 0 0 8 0 0 9 0 0 10 -
Netcat − Network Connections Made Easy
Netcat − network connections made easy A lot of the shell scripting I do involves piping the output of one command into another, such as: $ cat /var/log/messages | awk '{print $4,$5,$6,$7,$8,$9,$10,$11,$12,$13,$14,$15}' | sed −e 's/\[[0−9]*\]:/:/' | sort | uniq | less which shows me the system log file after removing the timestamps and [12345] pids and removing duplicates (1000 neatly ordered unique lines is a lot easier to scan than 6000 mixed together). The above technique works well when all the processing can be done on one machine. What happens if I want to somehow send this data to another machine right in the pipe? For example, instead of viewing it with less on this machine, I want to somehow send the output to my laptop so I can view it there. Ideally, the command would look something like: $ cat /var/log/messages | awk '{print $4,$5,$6,$7,$8,$9,$10,$11,$12,$13,$14,$15}' | sed −e 's/\[[0−9]*\]:/:/' | sort | uniq | laptop That exact syntax won't work because the shell thinks it needs to hand off the data to a program called laptop − which doesn't exist. There's a way to do it, though. Enter Netcat Netcat was written 5 years ago to perform exactly this kind of magic − allowing the user to make network connections between machines without any programming. Let's look at some examples of how it works. Let's say that I'm having trouble with a web server that's not returning the content I want for some reason. -
Install and Run External Command Line Softwares
job monitor and control top: similar to windows task manager (space to refresh, q to exit) w: who is there ps: all running processes, PID, status, type ps -ef | grep yyin bg: move current process to background fg: move current process to foreground jobs: list running and suspended processes kill: kill processes kill pid (could find out using top or ps) 1 sort, cut, uniq, join, paste, sed, grep, awk, wc, diff, comm, cat All types of bioinformatics sequence analyses are essentially text processing. Unix Shell has the above commands that are very useful for processing texts and also allows the output from one command to be passed to another command as input using pipe (“|”). less cosmicRaw.txt | cut -f2,3,4,5,8,13 | awk '$5==22' | cut -f1 | sort -u | wc This makes the processing of files using Shell very convenient and very powerful: you do not need to write output to intermediate files or load all data into the memory. For example, combining different Unix commands for text processing is like passing an item through a manufacturing pipeline when you only care about the final product 2 Hands on example 1: cosmic mutation data - Go to UCSC genome browser website: http://genome.ucsc.edu/ - On the left, find the Downloads link - Click on Human - Click on Annotation database - Ctrl+f and then search “cosmic” - On “cosmic.txt.gz” right-click -> copy link address - Go to the terminal and wget the above link (middle click or Shift+Insert to paste what you copied) - Similarly, download the “cosmicRaw.txt.gz” file - Under your home, create a folder -
PS TEXT EDIT Reference Manual Is Designed to Give You a Complete Is About Overview of TEDIT
Information Management Technology Library PS TEXT EDIT™ Reference Manual Abstract This manual describes PS TEXT EDIT, a multi-screen block mode text editor. It provides a complete overview of the product and instructions for using each command. Part Number 058059 Tandem Computers Incorporated Document History Edition Part Number Product Version OS Version Date First Edition 82550 A00 TEDIT B20 GUARDIAN 90 B20 October 1985 (Preliminary) Second Edition 82550 B00 TEDIT B30 GUARDIAN 90 B30 April 1986 Update 1 82242 TEDIT C00 GUARDIAN 90 C00 November 1987 Third Edition 058059 TEDIT C00 GUARDIAN 90 C00 July 1991 Note The second edition of this manual was reformatted in July 1991; no changes were made to the manual’s content at that time. New editions incorporate any updates issued since the previous edition. Copyright All rights reserved. No part of this document may be reproduced in any form, including photocopying or translation to another language, without the prior written consent of Tandem Computers Incorporated. Copyright 1991 Tandem Computers Incorporated. Contents What This Book Is About xvii Who Should Use This Book xvii How to Use This Book xvii Where to Go for More Information xix What’s New in This Update xx Section 1 Introduction to TEDIT What Is PS TEXT EDIT? 1-1 TEDIT Features 1-1 TEDIT Commands 1-2 Using TEDIT Commands 1-3 Terminals and TEDIT 1-3 Starting TEDIT 1-4 Section 2 TEDIT Topics Overview 2-1 Understanding Syntax 2-2 Note About the Examples in This Book 2-3 BALANCED-EXPRESSION 2-5 CHARACTER 2-9 058059 Tandem Computers