Reports of Plant Pathology Department of Agricultural Research Centre Tikkurila, Finland

Total Page:16

File Type:pdf, Size:1020Kb

Reports of Plant Pathology Department of Agricultural Research Centre Tikkurila, Finland REPORTS OF PLANT PATHOLOGY DEPARTMENT OF AGRICULTURAL RESEARCH CENTRE TIKKURILA, FINLAND Maatalouskoelaitoksen kasvi- Meddelanden från Lancbruksför- tautiosaston tiedonantoja. söksanstaltens avdelning kir växt- Tikkurila sjukdomar. Dickursby No. 18 1956 THE PLANT PATHOLOGY. DEPARTMENT OF THE AGRICULTURAL RESEARCH CENTRE THE MOST IMPORTANT DISEASES OF CROP PLANTS IN FINLAND AND THEIR CONTROL E. A. Jomoloinen TIKKURILA 1956 THE PLANT PATHOLOGY DEPARTMENT OF THE AGRICUL - TURAL RESEARCH CENTRE The present Plant Pathology De- partment of the Agricultural Research Centre began its activity in 1911 at Tikkurila, near Helsinki, as a Depart- ment of Plant Pathology of the Insti- tute of Agricultural and Economical Research. In addition to being a Re- ser,r,:h Institute of the State the In- sti'ute was, as an experimental sta- tion, subordinated to the Faculty of the University. In 1924 the Institute with its Departments was made a sep- arate Agricultural Research Centre of the State. The most important earlier a- chievements of the Department were researches on the smut diseases in Finland (17, 18, 19), and researches on the potato wart disease and its control (2), which were carried out under the direction of the renowned mycologist Professor J.1.1 ira, who held the directorship of the Department Boron deficiency diseases: (left) of Plant Pathology until 1937, in heart rot of sugar beet, (above addition to his professorship at the right) brown heart of swede, University. After him the directorshi p (below right) internal cork of was held by Professor A.J.Ra inio apples. until his death in 1944. The most important of his investigations were research on the Fusarium mould of for example in the middle of the oats (Fusarium roseum) (26), research 1930's instruction for controlling grain on the bacteria diseases of Gladioli diseases was arranged in cooperation (27) and a report on the potato late with the instructional organizations blight and its significance in Finland throughout the country. (28). Since 1925, when the Plant The research work carried out Protection Act became valid, the during the last two decades has Department has been responsible for extended to comprise besides diseases the statutes of the control of plant caused by parasitic fungi also non- diseases being observed. The Act has parasitic (physiogenic) plant diseases been widely applied in order to pre- and virus diseases. Of minor elements, vent the spreading of potato wart boron was the first object of research disease. Instruction in the field of at the Plant Pathology Department plant protection has continuosly been in Finland, and it was proved that on important part of the activities; the brown heart of swede is caused by a deficiency of boron (5); also ported in detail in the periodical other plant diseases caused by a Nordisk Jordbruksforskning (11). The deficiency of boron were found to following objects of research may occur in Finland, such as the heart deserve mentioning in this connection: rot of sugar beet and the internal the resistance of different varieties of cork disease of apple. Continued re- wheat to the stinking smut (6), the search on boron has shown that in Fusarium fungi in Finland (7), the wide areas in this country this element significance of potato virus diseases is a necessary nutrient for many plant in this country (8), and the fungus species (9). Other publications de- Sclerotinia borealis causing damage scribing the activity of the Plant in winter cereals and grasses (10). Pathology Department have been re- PRESENT ACTIVITIES AT THE PLANT PATHOLOGY DEPARTMENT At present (1956) the work of antsare Mr. Matti Haavisto, B. the Plant Pathology Department in- Agr. & Forest. and Mrs. Eeva cludes the following activities: 1) Tapio, 8. Agr. & Forest.; the research on plant diseases injurious Plant Protection Inspector is Mr . to cultivated plants, and their control Aarre Ylimäki, B.Agr. & For- methods, 2) experiments on the effec- est.; the Plant Protectants lnspector tivenes of fungicides, 3) inspection is Aulis Tinnilo B.Sc. (together duties in accordance with the Plant with the Department of Pest Inves- Protection Act and 4) instruction. tigation of the Agr. Res. Centre). The present Head of the Plant In addition the staff of the Depart- Pathology Department is Professor, ment consists of a junior research Dr. E.A. Jama loinen; the Senior worker, temporary research workers, Research Assistants are Miss., Dr. on office clerk, two laboratory as- Annikki Linnasalmi and Mr. sistants, two field assistants, and Jaakko Mukula, Lic. Agr & practising undergraduates. Forest.; the Junior Research Assist- Investigations and experiments OVERWINTERING OF CEREALS, special attention has been paid to GRASSES, CLOVER, AND RAPE. parasitic fungi damaging young crops Though most of the cultivoted fields of cereals, grass, clover, and rape in Finland are given to overwintering during winter (15, 25, 29). As there plants - winter roy and wheat, is much snow in winter in Finland, grasses, clover, and winter turnip these fungi often play a very impor- rape (Brassica campestris v. oleifera tant part in poor overwintering. In f. biennis) - knowledge about the winter cereals and grasses, damage is reasons for poor overwintering has caused by snow mould (Fusarium earlier in many cases been very nivale), in many cases by the fungi insufficient. In Ole investigations of Typhula spp. and in central and carried out during the last ten years northern parts of the country by by the Piant Pathology Department, Sclerotinia borealis (10). In clover, 2 occurrence in different parts of the country and the damage caused by them; to discover the resistance of different strains of grasses and clover and that of the different varieties of winter cereals to winter damage; to examine the importance of seed treatment with chemicals in the control of snow mould; to find out the effect of chemicals in the treat- ment of overwintering plants (25). Last time teste were made with the PC NB -(pentach loronitrobenzene-) preparations used as dust in the autumn, very good results were ob- tained in the control ling of snow mould in winter cereals (25), clover rot (25, 29) and the fungi in winter turnip rape (25). FOOT ROT DISEASES OF SPRING CERALS. In a wide area in the western part of Finland, spring wheat Sclerotia of Sclerotinia borealis thrives poorly because the kernels on winter are scabbed (shrivelheads disease of wheat). Investigations have shown damage is often caused by clover rot (3) that one reason for this is fungi, (Sclerotinia trioliorum) and in winter in the first place Cercosporella turnip rape by Typhula sp. and herpotrichoides (causing eye spot Sclerotinia sclerotiorum. Different disease) as well as some species of variesties of winter cereals and Fusarium which cause foot rot disease . different strains of grasses and clover, In addition to this it has been estab- show great differences with regard lished that also a species of insects, to their resistance to damage caused Amblymerus graminum Hårdh, can be by fungi. At the Plant Pathology a cause of the shrivelheads of spring Department the object of the investi- wheat damaging the foot of plants. gations has been: to define over- Foot rot diseases of spring cereals wintering fungi; to find out their caused by parastic fungi are also common in other parts of Finland. DISEASES OF POTATO. Attention has chiefly been paid to the control of potato late blight (Phytophthora infestans) with chemicals and to the study of the control of storage losses (cf. investications in storage, p. 0). DISEASES OF VEGETABLES AND ROOT CROPS. In Finland vegetable and root crops suffer during the period of growth from several injurious diseases whose control is difficult. Of The effect of PCNB dusting on. these diseases the Department has red clover, left untreated, right investigated the following: onion virus treated in previous autum. disease (Allium virus 1) (12), downy 3 Cucumber varieties resistant against anthrachnose (Cladosporium cucumerinum).Above(left) Superb OE 48, Cavallius Orig., Muromsk (susceptible); below (left) Wisconsin SR 6, Highrnoor, Maine n:o Z. Photo Ingervo, mildew of onion (Peronospora destruc- - In the control of club root good tor) (12), antrachnose of cucumber results have been obtained by treating (Cladosporium cucumerinum), leaf the planting holes of the seedlings mould of tomato (C.fulvum),steak of with calomel preparation. tomato, late blight of tomato DISEASES OF FRUIT-TREES AND (Phytophthora infestans), club root of BERRIES. Of the diseases occurring crucifers (Plasmodiophora brassicae), in fruit-trees and berries, the Depart- Sc I eroti nia disease (Sc lerotinia ment has investigated the control of sclerotiorum), and damping-off (caused apple scab (Ventura inaequalis), by Pythium and Rhizoctonia fungi); brown root (Sclerotinia fructigena) the last mentioned disease systemati- American mildew (Sphaerotheca mors cally as well as biologically (21). uvae), and spur blight of raspberry So for the experiments with (Didymella applanata). In the control cemicals on the control anthrachnose of apple scab experiments using the of cucumber (20) and leaf mould of timing spray method have given reli- tomato have not yielded satisfaztory able results (4). A great number of results. A great number of experiments these experiments have been carried have been made with varietiesresistant out in various parts of the country to these diseases, and seed material since 1954 and 1955. The effec- from different countries has been tiveness of new substances against imported for the purpose. Some of apple scab has been tried out, and these varieties have, indeed, been of these particulorly the Captan found to have a resistance against preparations have been found to be the diseases in question, and have effective in conditions prevailing in been found suitable for this country. Finland. 4 resistance of new varieties of wheat to stinking smut and on the resistance of new varieties of potato to wart disease.
Recommended publications
  • Sclerotinia Diseases of Crop Plants: Biology, Ecology and Disease Management G
    Sclerotinia Diseases of Crop Plants: Biology, Ecology and Disease Management G. S. Saharan • Naresh Mehta Sclerotinia Diseases of Crop Plants: Biology, Ecology and Disease Management Dr. G. S. Saharan Dr. Naresh Mehta CCS Haryana Agricultural University CCS Haryana Agricultural University Hisar, Haryana, India Hisar, Haryana, India ISBN 978-1-4020-8407-2 e-ISBN 978-1-4020-8408-9 Library of Congress Control Number: 2008924858 © 2008 Springer Science+Business Media B.V. No part of this work may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, microfilming, recording or otherwise, without written permission from the Publisher, with the exception of any material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Printed on acid-free paper 9 8 7 6 5 4 3 2 1 springer.com Foreword The fungus Sclerotinia has always been a fancy and interesting subject of research both for the mycologists and pathologists. More than 250 species of the fungus have been reported in different host plants all over the world that cause heavy economic losses. It was a challenge to discover weak links in the disease cycle to manage Sclerotinia diseases of large number of crops. For researchers and stu- dents, it has been a matter of concern, how to access voluminous literature on Sclerotinia scattered in different journals, reviews, proceedings of symposia, workshops, books, abstracts etc. to get a comprehensive picture. With the publi- cation of book on ‘Sclerotinia’, it has now become quite clear that now only three species of Sclerotinia viz., S.
    [Show full text]
  • Psychrophilic Fungi from the World's Roof
    Persoonia 34, 2015: 100–112 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X685878 Psychrophilic fungi from the world’s roof M. Wang1,2, X. Jiang3, W. Wu3, Y. Hao1, Y. Su1, L. Cai1, M. Xiang1, X. Liu1 Key words Abstract During a survey of cold-adapted fungi in alpine glaciers on the Qinghai-Tibet Plateau, 1 428 fungal isolates were obtained of which 150 species were preliminary identified. Phoma sclerotioides and Pseudogymnoascus pan- glaciers norum were the most dominant species. Psychrotolerant species in Helotiales (Leotiomycetes, Ascomycota) were Phoma sclerotioides studied in more detail as they represented the most commonly encountered group during this investigation. Two Pseudogymnoascus pannorum phylogenetic trees were constructed based on the partial large subunit nrDNA (LSU) to infer the taxonomic place- Psychrophila ments of these strains. Our strains nested in two well-supported major clades, which represented Tetracladium and psychrotolerant a previously unknown lineage. The unknown lineage is distant to any other currently known genera in Helotiales. Tetracladium Psychrophila gen. nov. was therefore established to accommodate these strains which are characterised by globose or subglobose conidia formed from phialides on short or reduced conidiophores. Our analysis also showed that an LSU-based phylogeny is insufficient in differentiating strains at species level. Additional analyses using combined sequences of ITS+TEF1+TUB regions were employed to further investigate the phylogenetic relationships of these strains. Together with the recognisable morphological distinctions, six new species (i.e. P. antarctica, P. lutea, P. oli- vacea, T. ellipsoideum, T. globosum and T. psychrophilum) were described. Our preliminary investigation indicates a high diversity of cold-adapted species in nature, and many of them may represent unknown species.
    [Show full text]
  • Minireview Snow Molds: a Group of Fungi That Prevail Under Snow
    Microbes Environ. Vol. 24, No. 1, 14–20, 2009 http://wwwsoc.nii.ac.jp/jsme2/ doi:10.1264/jsme2.ME09101 Minireview Snow Molds: A Group of Fungi that Prevail under Snow NAOYUKI MATSUMOTO1* 1Department of Planning and Administration, National Agricultural Research Center for Hokkaido Region, 1 Hitsujigaoka, Toyohira-ku, Sapporo 062–8555, Japan (Received January 5, 2009—Accepted January 30, 2009—Published online February 17, 2009) Snow molds are a group of fungi that attack dormant plants under snow. In this paper, their survival strategies are illustrated with regard to adaptation to the unique environment under snow. Snow molds consist of diverse taxonomic groups and are divided into obligate and facultative fungi. Obligate snow molds exclusively prevail during winter with or without snow, whereas facultative snow molds can thrive even in the growing season of plants. Snow molds grow at low temperatures in habitats where antagonists are practically absent, and host plants deteriorate due to inhibited photosynthesis under snow. These features characterize snow molds as opportunistic parasites. The environment under snow represents a habitat where resources available are limited. There are two contrasting strategies for resource utilization, i.e., individualisms and collectivism. Freeze tolerance is also critical for them to survive freezing temper- atures, and several mechanisms are illustrated. Finally, strategies to cope with annual fluctuations in snow cover are discussed in terms of predictability of the habitat. Key words: snow mold, snow cover, low temperature, Typhula spp., Sclerotinia borealis Introduction Typical snow molds have a distinct life cycle, i.e., an active phase under snow and a dormant phase from spring to In northern regions with prolonged snow cover, plants fall.
    [Show full text]
  • Draft Genome Sequence of Sclerotinia Borealis, a Psychrophilic Plant Pathogenic Fungus
    Draft Genome Sequence of Sclerotinia borealis, a Psychrophilic Plant Pathogenic Fungus Andrey V. Mardanov, Alexey V. Beletsky, Vitaly V. Kadnikov, Alexander N. Ignatov, Nikolai V. Ravin Centre Bioengineering, Russian Academy of Sciences, Moscow, Russia Sclerotinia borealis is a necrotrophic phytopathogenic fungus notable for its wide host range and environmental persis- tence. It grows at low temperatures, causing snow mold disease of crop plants. To understand the molecular mechanisms of its pathogenesis and adaptation to the psychrophilic lifestyle, we determined the 39.3-Mb draft genome sequence of S. borealis F-4128. Received 9 December 2013 Accepted 10 December 2013 Published 23 January 2014 Citation Mardanov AV, Beletsky AV, Kadnikov VV, Ignatov AN, Ravin NV. 2014. Draft genome sequence of Sclerotinia borealis, a psychrophilic plant pathogenic fungus. Genome Announc. 2(1):e01175-13. doi:10.1128/genomeA.01175-13. Copyright © 2014 Mardanov et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 Unported license. Address correspondence to Andrey V. Mardanov, [email protected]. clerotinia species are among the most diverse and widely gene order conservation. The arsenal of genes associated with the Sdistributed phytopathogenic fungi causing many economi- necrotrophic lifestyle is also similar between species, including the cally important diseases of crop plants (1). Sclerotinia borealis genes involved in plant cell wall degradation. However, many ge- Bubák & Vleugel has a broad host range, infecting at least 17 nome regions and genes specific to S. borealis may be responsible plant genera from the families Alliaceae, Asteraceae, Brassi- for its adaptation to particular ecological niches and conditions of caceae, Campanulaceae, Fabaceae, Iridaceae, Pinaceae, and growth.
    [Show full text]
  • Common Protein Sequence Signatures Associate with Sclerotinia Borealis Lifestyle and Secretion in Fungal Pathogens of the Sclerotiniaceae
    ORIGINAL RESEARCH published: 24 September 2015 doi: 10.3389/fpls.2015.00776 Common protein sequence signatures associate with Sclerotinia borealis lifestyle and secretion in fungal pathogens of the Sclerotiniaceae Thomas Badet 1, 2, Rémi Peyraud 1, 2 and Sylvain Raffaele 1, 2* Edited by: 1 Laboratoire des Interactions Plantes-Microorganismes, Institut National de la Recherche Agronomique, UMR441, Delphine Vincent, Castanet-Tolosan, France, 2 Laboratoire des Interactions Plantes-Microorganismes, Centre National de la Recherche Department of Environment and Scientifique, UMR2594, Castanet-Tolosan, France Primary Industries, Australia Reviewed by: Fungal plant pathogens produce secreted proteins adapted to function outside fungal Jana Sperschneider, Commonwealth Scientific and cells to facilitate colonization of their hosts. In many cases such as for fungi from Industrial Research Organisation, the Sclerotiniaceae family the repertoire and function of secreted proteins remains Australia elusive. In the Sclerotiniaceae, whereas Sclerotinia sclerotiorum and Botrytis cinerea are Kim Marilyn Plummer, La Trobe University, Australia cosmopolitan broad host-range plant pathogens, Sclerotinia borealis has a psychrophilic *Correspondence: lifestyle with a low optimal growth temperature, a narrow host range and geographic Sylvain Raffaele, distribution. To spread successfully, S. borealis must synthesize proteins adapted to Laboratoire des Interactions Plante Micro-organismes, 24 Chemin de function in its specific environment. The search for signatures of adaptation to S. borealis Borde Rouge – Auzeville, 31326 lifestyle may therefore help revealing proteins critical for colonization of the environment Castanet Tolosan, France by Sclerotiniaceae fungi. Here, we analyzed amino acids usage and intrinsic protein [email protected] disorder in alignments of groups of orthologous proteins from the three Sclerotiniaceae Specialty section: species.
    [Show full text]
  • Microdochium Nivale in Perennial Grasses: Snow Mould Resistance, Pathogenicity and Genetic Diversity
    Philosophiae Doctor (PhD), Thesis 2016:32 (PhD), Doctor Philosophiae ISBN: 978-82-575-1324-5 Norwegian University of Life Sciences ISSN: 1894-6402 Faculty of Veterinary Medicine and Biosciences Department of Plant Sciences Philosophiae Doctor (PhD) Thesis 2016:32 Mohamed Abdelhalim Microdochium nivale in perennial grasses: Snow mould resistance, pathogenicity and genetic diversity Microdochium nivale i flerårig gras: Resistens mot snømugg, patogenitet og genetisk diversitet Postboks 5003 Mohamed Abdelhalim NO-1432 Ås, Norway +47 67 23 00 00 www.nmbu.no Microdochium nivale in perennial grasses: Snow mould resistance, pathogenicity and genetic diversity. Microdochium nivale i flerårig gras: Resistens mot snømugg, patogenitet og genetisk diversitet. Philosophiae Doctor (PhD) Thesis Mohamed Abdelhalim Department of Plant Sciences Faculty of Veterinary Medicine and Biosciences Norwegian University of Life Sciences Ås (2016) Thesis number 2016:32 ISSN 1894-6402 ISBN 978-82-575-1324-5 Supervisors: Professor Anne Marte Tronsmo Department of Plant Sciences, Norwegian University of Life Sciences P.O. Box 5003, 1432 Ås, Norway Professor Odd Arne Rognli Department of Plant Sciences, Norwegian University of Life Sciences P.O. Box 5003, 1432 Ås, Norway Adjunct Professor May Bente Brurberg Department of Plant Sciences, Norwegian University of Life Sciences P.O. Box 5003, 1432 Ås, Norway The Norwegian Institute of Bioeconomy Research (NIBIO) Pb 115, NO-1431 Ås, Norway Researcher Dr. Ingerd Skow Hofgaard The Norwegian Institute of Bioeconomy Research (NIBIO) Pb 115, NO-1431 Ås, Norway Dr. Petter Marum Graminor AS. Bjørke forsøksgård, Hommelstadvegen 60 NO-2344 Ilseng, Norway Associate Professor Åshild Ergon Department of Plant Sciences, Norwegian University of Life Sciences P.O.
    [Show full text]
  • Sommerfeltia 31 Innmat 20080203.Indd
    SOMMERFELTIA 31 (2008) 125 SNOW MOLD FUNGUS, TYPHULA ISHIKARIENSIS GROUP III, IN ARC- TIC NORWAY CAN GROW AT A SUB-LETHAL TEMPERATURE AFTER FREEZING STRESS AND DURING FLOODING. T. Hoshino, A.M. Tronsmo & I. Yumoto Hoshino, T., Tronsmo, A.M. & Yumoto, I. 2008. Snow mold fungus, Typhula ishikariensis group III, in Arctic Norway can grow at a sub-lethal temperature after freezing stress and during flooding. – Sommerfeltia 31: 125-131. ISBN 82-7420-045-4. ISSN 0800-6865. Isolates of the snow mold fungus Typhula ishikariensis group III, which is predominant in Finnmark (northern Norway) and Svalbard, are more resistant to freezing stress than group I isolates from the southern part of Norway. Group III isolates showed irregular growth on potato dextrose agar (PDA) plates when subjected to heat stress at 10˚C. However, group III isolates showed relatively good growth on PDA at 10˚C after freezing treatment. The optimal temperatures for mycelial growth were 5˚C on PDA and 10˚C in potato dextrose broth (PDB), and group III isolates showed normal mycelial growth at 10˚C in PDB. Mycelium of group III isolates cultivated in water poured into PDA plates, and normal hyphal extension was observed only in the liquid media. Hyphal growth became irregular when mycelia had extended above the surface of the liquid media. These results suggested that group III isolates can grow at a sub-lethal temperature after freezing stress and during flooding. Soil freezing and thawing occurs regularly in the Arctic, and physiological characteristics of group III isolates are well adapted to climatic conditions in the Arctic.
    [Show full text]
  • Shifts in Diversification Rates and Host Jump Frequencies Shaped the Diversity of Host Range Among Sclerotiniaceae Fungal Plant Pathogens
    Original citation: Navaud, Olivier, Barbacci, Adelin, Taylor, Andrew, Clarkson, John P. and Raffaele, Sylvain (2018) Shifts in diversification rates and host jump frequencies shaped the diversity of host range among Sclerotiniaceae fungal plant pathogens. Molecular Ecology . doi:10.1111/mec.14523 Permanent WRAP URL: http://wrap.warwick.ac.uk/100464 Copyright and reuse: The Warwick Research Archive Portal (WRAP) makes this work of researchers of the University of Warwick available open access under the following conditions. This article is made available under the Creative Commons Attribution 4.0 International license (CC BY 4.0) and may be reused according to the conditions of the license. For more details see: http://creativecommons.org/licenses/by/4.0/ A note on versions: The version presented in WRAP is the published version, or, version of record, and may be cited as it appears here. For more information, please contact the WRAP Team at: [email protected] warwick.ac.uk/lib-publications Received: 30 May 2017 | Revised: 26 January 2018 | Accepted: 29 January 2018 DOI: 10.1111/mec.14523 ORIGINAL ARTICLE Shifts in diversification rates and host jump frequencies shaped the diversity of host range among Sclerotiniaceae fungal plant pathogens Olivier Navaud1 | Adelin Barbacci1 | Andrew Taylor2 | John P. Clarkson2 | Sylvain Raffaele1 1LIPM, Universite de Toulouse, INRA, CNRS, Castanet-Tolosan, France Abstract 2Warwick Crop Centre, School of Life The range of hosts that a parasite can infect in nature is a trait determined by its Sciences, University of Warwick, Coventry, own evolutionary history and that of its potential hosts. However, knowledge on UK host range diversity and evolution at the family level is often lacking.
    [Show full text]
  • Eukaryotic Plant Pathogen Detection Through High Throughput Dna/Rna Sequencing Data Analysis
    EUKARYOTIC PLANT PATHOGEN DETECTION THROUGH HIGH THROUGHPUT DNA/RNA SEQUENCING DATA ANALYSIS By ANDRES S. ESPINDOLA Bachelor of Science in Biotechnology Engineering Escuela Politécnica del Ejército Quito, Ecuador 2009 Master of Science in Entomology and Plant Pathology Oklahoma State University Stillwater, Oklahoma 2013 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY December, 2016 EUKARYOTIC PLANT PATHOGEN DETECTION THROUGH HIGH THROUGHPUT DNA/RNA SEQUENCING DATA ANALYSIS Thesis Approved: Dr. Carla Garzon Thesis Adviser Dr. William Schneider Dr. Stephen Marek Dr. Hassan Melouk ii ACKNOWLEDGEMENTS I would like to express my sincere gratitude to all the people who made possible the completion of my thesis research. Most importantly to my advisor Dr. Carla Garzon for her continuous support, guidance and motivation. She was a great support throughout my PhD. research and thesis writing. I would like to express my deepest gratitude to the members of my advisory committee: Dr. William Schneider, Dr. Stephen Maren and Dr. Hassan Melouk, for their guidance, insightful comments and encouragement. I want to thank the Department of Entomology and Plant Pathology at Oklahoma State University for keeping an excellent environment for the students and professors. This is a great advantage that has helped me to succeed on my research and thesis writing. Thanks to my fellow lab-mates for keeping a competitive and at the same time very friendly environment full of enriching discussions and productive working hours. I would like to thank my wife Patricia Acurio, who has been extremely helpful throughout my PhD., her support, patience, love and encouragement were crucial to succeed completing my degree.
    [Show full text]
  • Download the Full Report Pdf, 1.9 MB
    VKM Report 2016: 55 Assessment of manure and digestive tract content from slaughterhouses as a pathway for weeds and plant pests Opinion of the Panel on Plant Health of the Norwegian Scientific Committee for Food Safety Report from the Norwegian Scientific Committee for Food Safety (VKM) 2016: 55 Assessment of manure and digestive tract content from slaughterhouses as a pathway for weeds and plant pests Opinion of the Panel on Plant Health of the Norwegian Scientific Committee for Food Safety 15.11.2016 ISBN: 978-82-8259-245-1 Norwegian Scientific Committee for Food Safety (VKM) Po 4404 Nydalen N – 0403 Oslo Norway Phone: +47 21 62 28 00 Email: [email protected] www.vkm.no www.english.vkm.no Suggested citation: VKM. (2016) Risk assessment of manure and digestive tract content from slaughterhouses as a pathway for weeds and plant pests. Opinion of the Panel on Plant Health, ISBN: 978-82-8259-245-1, Oslo, Norway. VKM Report 2016: 55 Assessment of manure and digestive tract content from slaughterhouses as a pathway for weeds and plant pests Authors preparing the draft opinion Leif Sundheim, Åshild Ergon, Christer Magnusson, Jan Netland, Egil Prestløkken, Arild Sletten, May-Guri Sæthre, Elin Thingnæs Lid (VKM staff), Tron Gifstad (VKM staff), Micael Wendell (VKM staff). Assessed and approved The opinion has been assessed and approved by the Panel on Plant Health. Members of the panel are: Trond Rafoss (chair), Guro Brodal, Åshild Ergon, Christer Magnusson, Arild Sletten, Halvor Solheim, Leif Sundheim, May-Guri Sæthre, Anne Marte Tronsmo, Bjørn Økland. Acknowledgments The Norwegian Scientific Committee for Food Safety (Vitenskapskomiteen for mattrygghet, VKM) has appointed a working group consisting of both VKM members and external experts to answer the request from the Norwegian Food Safety Authority.
    [Show full text]
  • FUSARIUM- (Fusarium Spp.)
    Elements of disease management: breeding for resistance and influence of cultivation methods Based on lecture presentations by Helge Skinnes and Morten Lillemo PJH300 2017 Tittel på presentasjon Norwegian University of Life Sciences 1 Elements of disease management: breeding for resistance and influence of cultivation methods: outline • ( list of Norwegian, English and scientific names of some major cereal fungi diseases) • The disease triangle • Types of disease resistance Principles • Examples of diseases in cereals Elements/major types – air-borne pathogens – residue-borne pathogens – seed-borne pathogens • Disease control strategies Mandatory for JPH300-2017 – Variety mixtures – Integrated control – Risk assessment 2 Diseases in Cereals SYKDOMMER – diseases in cereals. • • BIOTROFE- biotrophic • MJØLDOGG- Mildew (Blumeria graminis) • SVARTRUST – stem rust, black rust (Puccinia graminis) • GULRUST- Yellow rust (Puccinia striiformis) • NEKROTROFE- necrotrophic • AKSPRIKK- Glume blotch (Stagnospora nodorum) • BLADPRIKK- Leaf blotch (Mycosphaerella graminicola) (Mycosphaerella graminicola) • BYGG BRUNFLEKK- Net blotch (Pyrenophora teres (Drechslera Teres)) • HAVRE BRUNFLEKK- Leaf blotch (Drechslera avenae) • GRÅ ØYEFLEKK- Scald (Rynchosporium secalis) • FUSARIUM- (Fusarium spp.) Tittel på presentasjon Norwegian University of Life Sciences 3 SYKDOMMER – diseases in cereals. • • • FOTSYKE- foot rot disease • ROTDREPER- Take all (Gaumanomyces graminis) • STRÅKNEKKER- Eyespot/strawbreaker (Pseudocercosporella herpotrichoides) • • FRØ- OVERFØRTE
    [Show full text]
  • The Barley Scald Pathogen Rhynchosporium Secalis Is Closely Related to the Discomycetes Tapesia and Pyrenopeziza
    Mycol. Res. 106 (6): 645–654 (June 2002). # The British Mycological Society 645 DOI: 10.1017\S0953756202006007 Printed in the United Kingdom. The barley scald pathogen Rhynchosporium secalis is closely related to the discomycetes Tapesia and Pyrenopeziza Stephen B. GOODWIN Crop Production and Pest Control Research Unit, USDA Agricultural Research Service, Department of Botany and Plant Pathology, 1155 Lilly Hall, Purdue University, West Lafayette, IN 47907-1155, USA. E-mail: sgoodwin!purdue.edu Received 3 July 2001; accepted 12 April 2002. Rhynchosporium secalis causes an economically important foliar disease of barley, rye, and other grasses known as leaf blotch or scald. This species has been difficult to classify due to a paucity of morphological features; the genus Rhynchosporium produces conidia from vegetative hyphae directly, without conidiophores or other structures. Furthermore, no teleomorph has been associated with R. secalis, so essentially nothing is known about its phylogenetic relationships. To identify other fungi that might be related to R. secalis, the 18S ribosomal RNA gene and the internal transcribed spacer (ITS) region (ITS1, 5n8S rRNA gene, and ITS2) were sequenced and compared to those in databases. Among 31 18S sequences downloaded from GenBank, the closest relatives to R. secalis were two species of Graphium (hyphomycetes) and two other accessions that were not identified to genus or species. Therefore, 18S sequences were not useful for elucidating the phylogenetic relationships of R. secalis. However, analyses of 76 ITS sequences revealed very close relationships among R. secalis and species of the discomycete genera Tapesia and Pyrenopeziza, as well as several anamorphic fungi including soybean and Adzuki-bean isolates of Phialophora gregata.
    [Show full text]