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Sclerotinia Diseases of Crop Plants: Biology, Ecology and Disease Management G
Sclerotinia Diseases of Crop Plants: Biology, Ecology and Disease Management G. S. Saharan • Naresh Mehta Sclerotinia Diseases of Crop Plants: Biology, Ecology and Disease Management Dr. G. S. Saharan Dr. Naresh Mehta CCS Haryana Agricultural University CCS Haryana Agricultural University Hisar, Haryana, India Hisar, Haryana, India ISBN 978-1-4020-8407-2 e-ISBN 978-1-4020-8408-9 Library of Congress Control Number: 2008924858 © 2008 Springer Science+Business Media B.V. No part of this work may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, microfilming, recording or otherwise, without written permission from the Publisher, with the exception of any material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Printed on acid-free paper 9 8 7 6 5 4 3 2 1 springer.com Foreword The fungus Sclerotinia has always been a fancy and interesting subject of research both for the mycologists and pathologists. More than 250 species of the fungus have been reported in different host plants all over the world that cause heavy economic losses. It was a challenge to discover weak links in the disease cycle to manage Sclerotinia diseases of large number of crops. For researchers and stu- dents, it has been a matter of concern, how to access voluminous literature on Sclerotinia scattered in different journals, reviews, proceedings of symposia, workshops, books, abstracts etc. to get a comprehensive picture. With the publi- cation of book on ‘Sclerotinia’, it has now become quite clear that now only three species of Sclerotinia viz., S. -
Psychrophilic Fungi from the World's Roof
Persoonia 34, 2015: 100–112 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X685878 Psychrophilic fungi from the world’s roof M. Wang1,2, X. Jiang3, W. Wu3, Y. Hao1, Y. Su1, L. Cai1, M. Xiang1, X. Liu1 Key words Abstract During a survey of cold-adapted fungi in alpine glaciers on the Qinghai-Tibet Plateau, 1 428 fungal isolates were obtained of which 150 species were preliminary identified. Phoma sclerotioides and Pseudogymnoascus pan- glaciers norum were the most dominant species. Psychrotolerant species in Helotiales (Leotiomycetes, Ascomycota) were Phoma sclerotioides studied in more detail as they represented the most commonly encountered group during this investigation. Two Pseudogymnoascus pannorum phylogenetic trees were constructed based on the partial large subunit nrDNA (LSU) to infer the taxonomic place- Psychrophila ments of these strains. Our strains nested in two well-supported major clades, which represented Tetracladium and psychrotolerant a previously unknown lineage. The unknown lineage is distant to any other currently known genera in Helotiales. Tetracladium Psychrophila gen. nov. was therefore established to accommodate these strains which are characterised by globose or subglobose conidia formed from phialides on short or reduced conidiophores. Our analysis also showed that an LSU-based phylogeny is insufficient in differentiating strains at species level. Additional analyses using combined sequences of ITS+TEF1+TUB regions were employed to further investigate the phylogenetic relationships of these strains. Together with the recognisable morphological distinctions, six new species (i.e. P. antarctica, P. lutea, P. oli- vacea, T. ellipsoideum, T. globosum and T. psychrophilum) were described. Our preliminary investigation indicates a high diversity of cold-adapted species in nature, and many of them may represent unknown species. -
Biotype Differentiation in the Typhula Ishikariensis Complex and Their Allopatry in Hokkaido
日 植 病 報 48: 275-280 (1982) Ann. Phytopath. Soc. Japan 48: 275-280 (1982) Biotype Differentiation in the Typhula ishikariensis Complex and Their Allopatry in Hokkaido Naoyuki MATSUMOTO*, Toru SATO** and Takao ARAKI*** 松 本 直 幸 *・佐藤 徹 **・荒木 隆 男***:雪腐 黒 色 小 粒 菌 核 病 菌 の生 物 型 と そ れ らの 北 海 道 内 に お け る異 所 性 Abstract Typhula ishikariensis isolates were collected from various parts of Hokkaido. There were two genetically different groups which did not mate with each other; one was termed biotype A, and the other was further divided into two by cultural characteristics, i.e., biotypes B and C. Biotype A was identical to T. ishikariensis and T. ishikariensis var. ishikariensis. Biotype B was not identical to T. idahoensis or T. ishikariensis var. idahoensis. Biotype C was similar to T. ishikariensis var. canadensis. Biotype A tended to occur inland where deep snow cover lasts for a long time. Biotype B was obtained mainly from the coastal regions where snow cover is thin and short in time. The distribution of biotype C was irregular. Taxonomic significance of the genetics and allopatry in the T. ishikari- ensis complex is discussed. (Received August 31, 1981) Key Words: snow mold fungi, taxonomy, distribution. Introduction Pathogenic species of Typhula had been confused in taxonomy until McDonald14) reviewed the literature on these fungi in 1961. Although he suggested the need for the comparison of many specimens from different sources by one investigator, he placed T. ishikariensis S. Imai and T. -
How Many Fungi Make Sclerotia?
fungal ecology xxx (2014) 1e10 available at www.sciencedirect.com ScienceDirect journal homepage: www.elsevier.com/locate/funeco Short Communication How many fungi make sclerotia? Matthew E. SMITHa,*, Terry W. HENKELb, Jeffrey A. ROLLINSa aUniversity of Florida, Department of Plant Pathology, Gainesville, FL 32611-0680, USA bHumboldt State University of Florida, Department of Biological Sciences, Arcata, CA 95521, USA article info abstract Article history: Most fungi produce some type of durable microscopic structure such as a spore that is Received 25 April 2014 important for dispersal and/or survival under adverse conditions, but many species also Revision received 23 July 2014 produce dense aggregations of tissue called sclerotia. These structures help fungi to survive Accepted 28 July 2014 challenging conditions such as freezing, desiccation, microbial attack, or the absence of a Available online - host. During studies of hypogeous fungi we encountered morphologically distinct sclerotia Corresponding editor: in nature that were not linked with a known fungus. These observations suggested that Dr. Jean Lodge many unrelated fungi with diverse trophic modes may form sclerotia, but that these structures have been overlooked. To identify the phylogenetic affiliations and trophic Keywords: modes of sclerotium-forming fungi, we conducted a literature review and sequenced DNA Chemical defense from fresh sclerotium collections. We found that sclerotium-forming fungi are ecologically Ectomycorrhizal diverse and phylogenetically dispersed among 85 genera in 20 orders of Dikarya, suggesting Plant pathogens that the ability to form sclerotia probably evolved 14 different times in fungi. Saprotrophic ª 2014 Elsevier Ltd and The British Mycological Society. All rights reserved. Sclerotium Fungi are among the most diverse lineages of eukaryotes with features such as a hyphal thallus, non-flagellated cells, and an estimated 5.1 million species (Blackwell, 2011). -
Minireview Snow Molds: a Group of Fungi That Prevail Under Snow
Microbes Environ. Vol. 24, No. 1, 14–20, 2009 http://wwwsoc.nii.ac.jp/jsme2/ doi:10.1264/jsme2.ME09101 Minireview Snow Molds: A Group of Fungi that Prevail under Snow NAOYUKI MATSUMOTO1* 1Department of Planning and Administration, National Agricultural Research Center for Hokkaido Region, 1 Hitsujigaoka, Toyohira-ku, Sapporo 062–8555, Japan (Received January 5, 2009—Accepted January 30, 2009—Published online February 17, 2009) Snow molds are a group of fungi that attack dormant plants under snow. In this paper, their survival strategies are illustrated with regard to adaptation to the unique environment under snow. Snow molds consist of diverse taxonomic groups and are divided into obligate and facultative fungi. Obligate snow molds exclusively prevail during winter with or without snow, whereas facultative snow molds can thrive even in the growing season of plants. Snow molds grow at low temperatures in habitats where antagonists are practically absent, and host plants deteriorate due to inhibited photosynthesis under snow. These features characterize snow molds as opportunistic parasites. The environment under snow represents a habitat where resources available are limited. There are two contrasting strategies for resource utilization, i.e., individualisms and collectivism. Freeze tolerance is also critical for them to survive freezing temper- atures, and several mechanisms are illustrated. Finally, strategies to cope with annual fluctuations in snow cover are discussed in terms of predictability of the habitat. Key words: snow mold, snow cover, low temperature, Typhula spp., Sclerotinia borealis Introduction Typical snow molds have a distinct life cycle, i.e., an active phase under snow and a dormant phase from spring to In northern regions with prolonged snow cover, plants fall. -
Basidiomycetous Yeast, Glaciozyma Antarctica, Forming Frost-Columnar Colonies on Frozen Medium
microorganisms Article Basidiomycetous Yeast, Glaciozyma antarctica, Forming Frost-Columnar Colonies on Frozen Medium Seiichi Fujiu 1,2,3, Masanobu Ito 1,3, Eriko Kobayashi 1,3, Yuichi Hanada 1,2, Midori Yoshida 4, Sakae Kudoh 5,* and Tamotsu Hoshino 1,6,* 1 Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 2-17-2-1, Tsukisamu-higashi, Toyohira-ku, Sapporo 062-8517, Hokkaido, Japan; [email protected] (S.F.); [email protected] (M.I.); [email protected] (E.K.); [email protected] (Y.H.) 2 Graduate School of Science, Hokkaido University, N10 W8, Kita-ku, Sapporo 060-0810, Hokkaido, Japan 3 School of Biological Sciences, Tokai University, 1-1-1, Minaminosawa 5, Minami-ku, Sapporo 005-0825, Hokkaido, Japan 4 Hokkaido Agricultural Research Center, NARO, Hitsujigaoka 1, Toyohira-ku, Sapporo 062-8555, Hokkaido, Japan; [email protected] 5 Biology Group, National Institute of Polar Research, 10-3, Midori-cho, Tachikawa, Tokyo 190-8518, Japan 6 Department of Life and Environmental Science, Faculty of Engineering, Hachinohe Institute of Technology, Obiraki 88-1, Myo, Hachinohe 031-8501, Aomori, Japan * Correspondence: [email protected] (S.K.); [email protected] (T.H.); Tel.: +81-42-512-0739 (S.K.); +81-178-25-8174 (T.H.); Fax: +81-42-528-3492 (S.K.); +81-178-25-6825 (T.H.) Abstract: The basidiomycetous yeast, Glaciozyma antarctica, was isolated from various terrestrial materials collected from the Sôya coast, East Antarctica, and formed frost-columnar colonies on agar plates frozen at −1 ◦C. -
Snow Molds of Turfgrasses, RPD No
report on RPD No. 404 PLANT July 1997 DEPARTMENT OF CROP SCIENCES DISEASE UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN SNOW MOLDS OF TURFGRASSES Snow molds are cold tolerant fungi that grow at freezing or near freezing temperatures. Snow molds can damage turfgrasses from late fall to spring and at snow melt or during cold, drizzly periods when snow is absent. It causes roots, stems, and leaves to rot when temperatures range from 25° to 60°F (-3° to 15°C). When the grass surface dries out and the weather warms, snow mold fungi cease to attack; however, infection can reappear in the area year after year. Snow molds are favored by excessive early fall applications of fast release nitrogenous fertilizers, Figure 1. Gray snow mold on a home lawn (courtesy R. Alden excessive shade, a thatch greater than 3/4 inch Miller). thick, or mulches of straw, leaves, synthetics, and other moisture-holding debris on the turf. Disease is most serious when air movement and soil drainage are poor and the grass stays wet for long periods, e.g., where snow is deposited in drifts or piles. All turfgrasses grown in the Midwest are sus- ceptible to one or more snow mold fungi. They include Kentucky and annual bluegrasses, fescues, bentgrasses, ryegrasses, bermudagrass, and zoysiagrasses with bentgrasses often more severely damaged than coarser turfgrasses. Figure 2. Pink snow mold or Fusarium patch. patches are 8-12 There are two types of snow mold in the inches across, covered with pink mold as snow melts (courtesy R.W. Smiley). Midwest: gray or speckled snow mold, also known as Typhula blight or snow scald, and pink snow mold or Fusarium patch. -
Draft Genome Sequence of Sclerotinia Borealis, a Psychrophilic Plant Pathogenic Fungus
Draft Genome Sequence of Sclerotinia borealis, a Psychrophilic Plant Pathogenic Fungus Andrey V. Mardanov, Alexey V. Beletsky, Vitaly V. Kadnikov, Alexander N. Ignatov, Nikolai V. Ravin Centre Bioengineering, Russian Academy of Sciences, Moscow, Russia Sclerotinia borealis is a necrotrophic phytopathogenic fungus notable for its wide host range and environmental persis- tence. It grows at low temperatures, causing snow mold disease of crop plants. To understand the molecular mechanisms of its pathogenesis and adaptation to the psychrophilic lifestyle, we determined the 39.3-Mb draft genome sequence of S. borealis F-4128. Received 9 December 2013 Accepted 10 December 2013 Published 23 January 2014 Citation Mardanov AV, Beletsky AV, Kadnikov VV, Ignatov AN, Ravin NV. 2014. Draft genome sequence of Sclerotinia borealis, a psychrophilic plant pathogenic fungus. Genome Announc. 2(1):e01175-13. doi:10.1128/genomeA.01175-13. Copyright © 2014 Mardanov et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 Unported license. Address correspondence to Andrey V. Mardanov, [email protected]. clerotinia species are among the most diverse and widely gene order conservation. The arsenal of genes associated with the Sdistributed phytopathogenic fungi causing many economi- necrotrophic lifestyle is also similar between species, including the cally important diseases of crop plants (1). Sclerotinia borealis genes involved in plant cell wall degradation. However, many ge- Bubák & Vleugel has a broad host range, infecting at least 17 nome regions and genes specific to S. borealis may be responsible plant genera from the families Alliaceae, Asteraceae, Brassi- for its adaptation to particular ecological niches and conditions of caceae, Campanulaceae, Fabaceae, Iridaceae, Pinaceae, and growth. -
Common Protein Sequence Signatures Associate with Sclerotinia Borealis Lifestyle and Secretion in Fungal Pathogens of the Sclerotiniaceae
ORIGINAL RESEARCH published: 24 September 2015 doi: 10.3389/fpls.2015.00776 Common protein sequence signatures associate with Sclerotinia borealis lifestyle and secretion in fungal pathogens of the Sclerotiniaceae Thomas Badet 1, 2, Rémi Peyraud 1, 2 and Sylvain Raffaele 1, 2* Edited by: 1 Laboratoire des Interactions Plantes-Microorganismes, Institut National de la Recherche Agronomique, UMR441, Delphine Vincent, Castanet-Tolosan, France, 2 Laboratoire des Interactions Plantes-Microorganismes, Centre National de la Recherche Department of Environment and Scientifique, UMR2594, Castanet-Tolosan, France Primary Industries, Australia Reviewed by: Fungal plant pathogens produce secreted proteins adapted to function outside fungal Jana Sperschneider, Commonwealth Scientific and cells to facilitate colonization of their hosts. In many cases such as for fungi from Industrial Research Organisation, the Sclerotiniaceae family the repertoire and function of secreted proteins remains Australia elusive. In the Sclerotiniaceae, whereas Sclerotinia sclerotiorum and Botrytis cinerea are Kim Marilyn Plummer, La Trobe University, Australia cosmopolitan broad host-range plant pathogens, Sclerotinia borealis has a psychrophilic *Correspondence: lifestyle with a low optimal growth temperature, a narrow host range and geographic Sylvain Raffaele, distribution. To spread successfully, S. borealis must synthesize proteins adapted to Laboratoire des Interactions Plante Micro-organismes, 24 Chemin de function in its specific environment. The search for signatures of adaptation to S. borealis Borde Rouge – Auzeville, 31326 lifestyle may therefore help revealing proteins critical for colonization of the environment Castanet Tolosan, France by Sclerotiniaceae fungi. Here, we analyzed amino acids usage and intrinsic protein [email protected] disorder in alignments of groups of orthologous proteins from the three Sclerotiniaceae Specialty section: species. -
Microdochium Nivale in Perennial Grasses: Snow Mould Resistance, Pathogenicity and Genetic Diversity
Philosophiae Doctor (PhD), Thesis 2016:32 (PhD), Doctor Philosophiae ISBN: 978-82-575-1324-5 Norwegian University of Life Sciences ISSN: 1894-6402 Faculty of Veterinary Medicine and Biosciences Department of Plant Sciences Philosophiae Doctor (PhD) Thesis 2016:32 Mohamed Abdelhalim Microdochium nivale in perennial grasses: Snow mould resistance, pathogenicity and genetic diversity Microdochium nivale i flerårig gras: Resistens mot snømugg, patogenitet og genetisk diversitet Postboks 5003 Mohamed Abdelhalim NO-1432 Ås, Norway +47 67 23 00 00 www.nmbu.no Microdochium nivale in perennial grasses: Snow mould resistance, pathogenicity and genetic diversity. Microdochium nivale i flerårig gras: Resistens mot snømugg, patogenitet og genetisk diversitet. Philosophiae Doctor (PhD) Thesis Mohamed Abdelhalim Department of Plant Sciences Faculty of Veterinary Medicine and Biosciences Norwegian University of Life Sciences Ås (2016) Thesis number 2016:32 ISSN 1894-6402 ISBN 978-82-575-1324-5 Supervisors: Professor Anne Marte Tronsmo Department of Plant Sciences, Norwegian University of Life Sciences P.O. Box 5003, 1432 Ås, Norway Professor Odd Arne Rognli Department of Plant Sciences, Norwegian University of Life Sciences P.O. Box 5003, 1432 Ås, Norway Adjunct Professor May Bente Brurberg Department of Plant Sciences, Norwegian University of Life Sciences P.O. Box 5003, 1432 Ås, Norway The Norwegian Institute of Bioeconomy Research (NIBIO) Pb 115, NO-1431 Ås, Norway Researcher Dr. Ingerd Skow Hofgaard The Norwegian Institute of Bioeconomy Research (NIBIO) Pb 115, NO-1431 Ås, Norway Dr. Petter Marum Graminor AS. Bjørke forsøksgård, Hommelstadvegen 60 NO-2344 Ilseng, Norway Associate Professor Åshild Ergon Department of Plant Sciences, Norwegian University of Life Sciences P.O. -
87-Fernanda-Cid.Pdf
UNIVERSIDAD DE LA FRONTERA Facultad de Ingeniería y Ciencias Doctorado en Ciencias de Recursos Naturales Characterization of bacterial communities from Deschampsia antarctica phyllosphere and genome sequencing of culturable bacteria with ice recrystallization inhibition activity DOCTORAL THESIS IN FULFILLMENT OF THE REQUERIMENTS FOR THE DEGREE DOCTOR OF SCIENCES IN NATURAL RESOURCES FERNANDA DEL PILAR CID ALDA TEMUCO-CHILE 2018 “Characterization of bacterial communities from Deschampsia antarctica phyllosphere and genome sequencing of culturable bacteria with ice recrystallization inhibition activity” Esta tesis fue realizada bajo la supervisión del Director de tesis, Dr. Milko A. Jorquera Tapia, profesor asociado del Departamento de Ciencias Químicas y Recursos Naturales, Facultad de Ingeniería y Ciencias, Universidad de La Frontera y co-dirigida por el Dr. León A. Bravo Ramírez, profesor titular del Departamento de Ciencias Agronómicas y Recursos Naturales, Facultad de Ciencias Agropecuarias y Forestales, Universidad de La Frontera. Esta tesis ha sido además aprobada por la comisión examinadora. Fernanda del Pilar Cid Alda …………………………………………… ……………………………………. Dr. MILKO JORQUERA T. Dr. Francisco Matus DIRECTOR DEL PROGRAMA DE …………………………………………. DOCTORADO EN CIENCIAS DE Dr. LEON BRAVO R. RECURSOS NATURALES …………………………………………. Dra. MARYSOL ALVEAR Z. ............................................................ Dr. Juan Carlos Parra ………………………………………… DIRECTOR DE POSTGRADO Dra. PAULINA BULL S. UNIVERSIDAD DE LA FRONTERA ………………………………………… Dr. LUIS COLLADO G. ………………………………………… Dra. ANA MUTIS T Dedico esta tesis a mis padres, Lillie Alda Leiva y Fernando Cid Verdugo quienes dedicaron sus vidas a la tarea de enseñar en la Universidad de La Frontera, Temuco-Chile. Abril, 2018 Agradecimientos /Acknowledgements Agradecimientos /Acknowledgements This study was supported by the following research projects: Doctoral Scholarship from Conicyt (no. 21140534) and La Frontera University. -
Chapter 3 Dikaryon-Monokaryon Mating Reactions of Typllula
63 Chapter 3 Dikaryon-monokaryon mating reactions of TypllUla irhikariensis (mat complex isolates from Wisconsin golf courses with tester isolates from Japan, Norway, Russia and Canada 64 ABSTRACT Speckled snow mold, caused by the TypJwla ishikariensis (TISH) complex, is a common lUrfgrass disease in areas that receive extended periods of snow cover. There are two biological species (BSI and aSH) within this complex and it has been reported that they vary in their ability to be managed- aSH isolates are believed to be soil-borne and more aggressive than the ast isolates. TISH isolates from Wisconsin golf courses were grouped ilCcording to the morphological characteristics of BSI and BSII. From mating experiments with 8Sl and BSII tester isolates from Japan, Norway, Canada and Russia. it was revealed that both mating groups were collected from Wisconsin. III vitro, Wisconsin dikaryotic isolates were paired with monokaryotic aSI and BSII tester isolates. Clamp connection fonnation of the tester isolate indicated a positive mating reaction. Twenty-three percent of the Wisconsin isolates were morphologically similar to, and mated with the BSI isolates, while 77% were morphologically similar to, and mated with aSH isolates. Identifying and understanding the biological differences between BSI and BSII of the TISH complex should improve Typhula blight management. 65 INTRODUCTION Various methods of identification of Typlm/a species have assisted plant pathologists in diagnosing Typhula blights that cause damage to economically important plants. Early mycologists relied heavily on the characteristics of the fruiting body to identify the Typhula species (Persoon, 1801; Fries, 1821; Karsten, 1882). UnfortUnately, the fruiting bodies of the plant pathogenic Typllula species are rarely found in nature and arc not likely to be associated with the damaged plants.