Response Mechanism of Plants to Drought Stress
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The Synergistic Effects of Sodium and Potassium on the Xerophyte
Plant Physiology and Biochemistry xxx (xxxx) xxx–xxx Contents lists available at ScienceDirect Plant Physiology and Biochemistry journal homepage: www.elsevier.com/locate/plaphy Research article The synergistic effects of sodium and potassium on the xerophyte Apocynum venetum in response to drought stress ∗ Yan-Nong Cuia,1, Zeng-Run Xiaa,b,1, Qing Maa, Wen-Ying Wanga, Wei-Wei Chaia, Suo-Min Wanga, a State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730000, PR China b Ankang R&D Center of Se-enriched Products, Key Laboratory of Se-enriched Products Development and Quality Control, Ministry of Agriculture, Ankang, Shaanxi, 725000, PR China ARTICLE INFO ABSTRACT Keywords: Apocynum venetum is an eco-economic plant species with high adaptability to saline and arid environments. Our Apocynum venetum previous work has found that A. venetum could absorb large amount of Na+ and maintain high K+ level under Potassium efficiency saline conditions. To investigate whether K+ and Na+ could simultaneously enhance drought resistance in A. Osmotic stress venetum, seedlings were exposed to osmotic stress (−0.2 MPa) in the presence or absence of additional 25 mM Sodium NaCl under low (0.01 mM) and normal (2.5 mM) K+ supplying conditions, respectively. The results showed that Osmotic adjustment A. venetum should be considered as a typical K+-efficient species since its growth was unimpaired and possessed Photosynthesis a strong K+ uptake and prominent K+ utilization efficiency under K+ deficiency condition. Leaf K+ con- centration remained stable or was even significantly increased under osmotic stress in the presence or absence of NaCl, compared with that under control condition, regardless of whether the K+ supply was sufficient or not, and the contribution of K+ to leaf osmotic potential consistently exceeded 37%, indicating K+ is the uppermost contributor to osmotic adjustment of A. -
Grapes for the Desert: Salt Stress Signaling in Vitis
Grapes for the Desert: Salt Stress Signaling in Vitis Zur Erlangung des akademischen Grades eines DOKTORS DER NATURWISSENSCHAFTEN (Dr. rer. Nat.) der Fakultät für Chemie und Biowissenschaften des Karlsruher Instituts für Technologie (KIT) genehmigte DISSERTATION von Ahmed Abd Alkarim Mohammed Ismail aus Damanhour, Ägypten Die vorliegende Dissertation wurde in der Abteilung Molekulare Zellbiologie, am Botanischen Institut des Karlsruher Instituts für Technologie (KIT) im Zeitraum von April 2010 bis Juli 2013 angefertigt. Dekan: Prof. Dr. M. Bastmeyer Referent: Prof. Dr. P. Nick Korreferent: Prof. Dr. H. Puchta Prof. Dr. Natalia Requena Dr. Christoph Basse Tag der mündlichen Prüfung: 19. Juli 2013 Hiermit erkläre ich, dass ich die vorliegende Dissertation, abgesehen von der Benutzung der angegebenen Hilfsmittel, selbstständig verfasst habe. Alle Stellen, die gemäß Wortlaut oder Inhalt aus anderen Arbeiten entnommen sind, wurden durch Angabe der Quelle als Entlehnungen kenntlich gemacht. Diese Dissertation liegt in gleicher oder ähnlicher Form keiner anderen Prüfungsbehörde vor. Karlsruhe, den 19. Juli 2013 Ahmed Abd Alkarim Mohammed Ismail Table of Contents Table of Contents Abbreviations ........................................................................... IV Summary / Zusammenfassung ............................................... XI 1 Introduction ............................................................................. 1 1.1 What does stress mean for a plant? .............................................. 1 1.2 Environmental -
Carnitine Metabolism to Trimethylamine by an Unusual Rieske-Type Oxygenase from Human Microbiota
Carnitine metabolism to trimethylamine by an unusual Rieske-type oxygenase from human microbiota Yijun Zhua,1, Eleanor Jamesona,1, Marialuisa Crosattib,1, Hendrik Schäfera, Kumar Rajakumarb, Timothy D. H. Buggc, and Yin Chena,2 aSchool of Life Sciences and cDepartment of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom; and bDepartment of Infection, Immunity, and Inflammation, University of Leicester, Leicester LE1 9HN, United Kingdom Edited by David W. Russell, University of Texas Southwestern Medical Center, Dallas, TX, and approved January 29, 2014 (received for review September 5, 2013) Dietary intake of L-carnitine can promote cardiovascular diseases in (14, 15). Assigning functions encoded in the human microbiome humans through microbial production of trimethylamine (TMA) using existing databases can be problematic. For example, the and its subsequent oxidation to trimethylamine N-oxide by hepatic Pfam protein database currently contains over 25% of protein flavin-containing monooxygenases. Although our microbiota are re- families with no assigned functions (release 26.0) (19). sponsible for TMA formation from carnitine, the underpinning mo- Lack of functional characterization of key microbial functions lecular and biochemical mechanisms remain unclear. In this study, in our microbiota is exemplified by very recent studies on car- using bioinformatics approaches, we first identified a two-component diovascular diseases (20–23). These studies have shown that the Rieske-type oxygenase/reductase (CntAB) and associated gene human microbiota is responsible for the production of trime- cluster proposed to be involved in carnitine metabolism in repre- thylamine N-oxide (TMAO), which is believed to promote ath- sentative genomes of the human microbiota. CntA belongs to a erogenesis through its interaction with macrophages and lipid group of previously uncharacterized Rieske-type proteins and has metabolism (20–23). -
Punam Jaiswal PG-IV XEROPHYTES(Morphology).Pdf
Environmental Biology Prof.(Dr.) Punam Jeswal Head M.Sc semester IV Botany Department XEROPHYTES A xerophyte (Gr. Xeros, dry; phyton, plant) is a plant which is able to survive in an environment with low availability of water or moisture, such as desert, ice or snow covered region. Xerophytes defined as "plants of dry habitats". Xerophytes are plants adopted in order to survive or grow in dry habitats (xeric condition) where the availability of water is very less. Daubenmire (1959) defined xerophytes as "plants which grow on substrate that usually become depleted of water to a depth of at least two decimeters during normal growth season". Xerophytes are plants of relatively dry habitats - dry in soil and most often also climatically. Xerophytes plants live in condition of water scarcity i.e. in xeric condition (habitat). Xeric habitats are of two types - 1) Physically dry habitat :- Water retaining capacity of the soil very low and climate is dry. Water cannot retained like desert or rock surface. 2) Physiologically dry :- Water is present in excess, but not in absorbable conditions or the plants cannot absorb it. e.g. high salt water, high acidic water and high cold water, water in snow form. Adaptation Strategies of Xerophytes :- Xerophytes adopt various features according to their climate, geography and requirements. Xerophytes plants aim at the following adaptation strategies :- 1) Absorb more water from the surrounding. 2) Retain water in their organs. 3) Reduce the water loss by transpiration to minimise. 4) Reduce utilisation of water ( Prevent high consumption of water) Types Of Xerophytes On the basis of morphology, physiology and life cycle patterns, xerophytes are classified into three categories :- 1) Ephemeral Annuals ( Drought Evaders or Drought Escapers) * They are also called as 'drought evaders' or 'drought escapers' common in arid zones. -
Thermophilic Bacteria Are Potential Sources of Novel Rieske Non-Heme
Chakraborty et al. AMB Expr (2017) 7:17 DOI 10.1186/s13568-016-0318-5 ORIGINAL ARTICLE Open Access Thermophilic bacteria are potential sources of novel Rieske non‑heme iron oxygenases Joydeep Chakraborty, Chiho Suzuki‑Minakuchi, Kazunori Okada and Hideaki Nojiri* Abstract Rieske non-heme iron oxygenases, which have a Rieske-type [2Fe–2S] cluster and a non-heme catalytic iron center, are an important family of oxidoreductases involved mainly in regio- and stereoselective transformation of a wide array of aromatic hydrocarbons. Though present in all domains of life, the most widely studied Rieske non-heme iron oxygenases are found in mesophilic bacteria. The present study explores the potential for isolating novel Rieske non- heme iron oxygenases from thermophilic sources. Browsing the entire bacterial genome database led to the identifi‑ cation of 45 homologs from thermophilic bacteria distributed mainly among Chloroflexi, Deinococcus–Thermus and Firmicutes. Thermostability, measured according to the aliphatic index, showed higher values for certain homologs compared with their mesophilic relatives. Prediction of substrate preferences indicated that a wide array of aromatic hydrocarbons could be transformed by most of the identified oxygenase homologs. Further identification of putative genes encoding components of a functional oxygenase system opens up the possibility of reconstituting functional thermophilic Rieske non-heme iron oxygenase systems with novel properties. Keywords: Rieske non-heme iron oxygenase, Oxidoreductase, Thermophiles, Aromatic hydrocarbons, Biotransformation Introduction of a wide array of agrochemically and pharmaceutically Rieske non-heme iron oxygenases (ROs) constitute a important compounds (Ensley et al. 1983; Wackett et al. large family of oxidoreductase enzymes involved primar- 1988; Hudlicky et al. -
(2) How Plants Manage Water Deficit and Why It Matters
Plant-Water Relations (2) How plants manage water deficit and why it matters Photo credits: Mel Oliver; William M. Ciesla, Forest Health Management International; R.L. Croissant Bugwood.org © 2014 American Society of Plant Biologists Outline 1. Water scarcity is a growing problem 2. Desiccation-tolerant plants and xerophytes 3. Plant responses to water deficit Perception and signaling Transcriptional responses Effects on photosynthesis Effects on growth and development 4. Towards water-optimized and drought-tolerant agriculture Optimizing irrigation Monitoring water stress 5. Breeding for drought-tolerance Classical approaches Candidate gene approaches © 2014 American Society of Plant Biologists Key definitions and concepts Desiccation: Extreme water loss, equilibration to the water potential of the air which is generally low Desiccation tolerance: The ability to withstand and recover from desiccation Dehydration: The process of water loss from a cell or system Water deficit: Sub-optimal water status from the perspective of plant function Drought: Lack of rainfall or water supply leading to water deficit Drought tolerance: The ability to withstand suboptimal water availability through adaptations or acclimations (not the same as desiccation tolerance) Xerophyte: A plant adapted to live in a low-water environment Mesophyte: A plant without specialized adaptions to low-water or high- water environments Adaptation: Long-term evolutionary process by which an organism becomes suited to its environment Acclimation: Short-term physiological process -
Role in Plant Stress Physiology and Regulation of Gene Expression
Characterisation of selected Arabidopsis aldehyde dehydrogenase genes: role in plant stress physiology and regulation of gene expression Dissertation Zur Erlangung des Doktorgrades (Dr. rer. nat.) der Mathematisch-Naturwissenschaftlichen Fakultät der Rheinischen Friedrich-Wilhelms-Universität Bonn vorgelegt von Tagnon Dègbédji MISSIHOUN aus Cotonou, Benin Bonn, November 2010 Angefertigt mit Genehmigung der Mathematisch- Naturwissenschaftlichen Fakultät der Rheinischen Friedrich-Wilhelms-Universität Bonn Gedruckt mit Unterstützung des Deutschen Akademischen Austauschdienstes 1. Referentin: Prof. Dr. Dorothea Bartels 2. Koreferent: Priv. Doz. Dr. Hans-Hubert Kirch Tag der Promotion: 22. Februar 2011 Erscheinungsjahr: 2011 II DECLARATION I hereby declare that the whole PhD thesis is my own work, except where explicitly stated otherwise in the text or in the bibliography. Bonn, November 2010 ------------------------------------ Tagnon D. MISSIHOUN III DEDICATION To My wife: Fabienne TOSSOU-MISSIHOUN and our kids Floriane S. Jennifer and Sègnon Anges- Anis My parents: Lucrèce KOTOMALE and Dadjo MISSIHOUN My sister and brothers: Mariette, Marius, Ricardo, Renaud, Ulrich And my dearest aunts and uncles: Hoho, Rebecca, Cyriaque, Dominique, Alphonsine IV CONTENTS ABBREVIATIONS ...............................................................................................................................................X FIGURES AND TABLES ...............................................................................................................................XIII -
Relating Metatranscriptomic Profiles to the Micropollutant
1 Relating Metatranscriptomic Profiles to the 2 Micropollutant Biotransformation Potential of 3 Complex Microbial Communities 4 5 Supporting Information 6 7 Stefan Achermann,1,2 Cresten B. Mansfeldt,1 Marcel Müller,1,3 David R. Johnson,1 Kathrin 8 Fenner*,1,2,4 9 1Eawag, Swiss Federal Institute of Aquatic Science and Technology, 8600 Dübendorf, 10 Switzerland. 2Institute of Biogeochemistry and Pollutant Dynamics, ETH Zürich, 8092 11 Zürich, Switzerland. 3Institute of Atmospheric and Climate Science, ETH Zürich, 8092 12 Zürich, Switzerland. 4Department of Chemistry, University of Zürich, 8057 Zürich, 13 Switzerland. 14 *Corresponding author (email: [email protected] ) 15 S.A and C.B.M contributed equally to this work. 16 17 18 19 20 21 This supporting information (SI) is organized in 4 sections (S1-S4) with a total of 10 pages and 22 comprises 7 figures (Figure S1-S7) and 4 tables (Table S1-S4). 23 24 25 S1 26 S1 Data normalization 27 28 29 30 Figure S1. Relative fractions of gene transcripts originating from eukaryotes and bacteria. 31 32 33 Table S1. Relative standard deviation (RSD) for commonly used reference genes across all 34 samples (n=12). EC number mean fraction bacteria (%) RSD (%) RSD bacteria (%) RSD eukaryotes (%) 2.7.7.6 (RNAP) 80 16 6 nda 5.99.1.2 (DNA topoisomerase) 90 11 9 nda 5.99.1.3 (DNA gyrase) 92 16 10 nda 1.2.1.12 (GAPDH) 37 39 6 32 35 and indicates not determined. 36 37 38 39 S2 40 S2 Nitrile hydration 41 42 43 44 Figure S2: Pearson correlation coefficients r for rate constants of bromoxynil and acetamiprid with 45 gene transcripts of ECs describing nucleophilic reactions of water with nitriles. -
Plant Classification and Seeds
Ashley Pearson – Plant Classification and Seeds ● Green and Gorgeous Oxfordshire ● Cut flowers ● Small amounts of veg still grown and sold locally Different Classification Systems Classification by Life Cycle : Ephemeral (6-8 wks) Annual Biennial Perennial Classification by Ecology: Mesophyte, Xerophyte, Hydrophyte, Halophyte, Cryophyte Raunkiaers Life Form System: based on the resting stage Raunkiaers Life Form System Classification contd. Classification by Plant Growth Patterns Monocots vs. Dicots (NB. only applies to flowering plants - angiosperms) Binomial nomenclature e.g., Beetroot = Beta vulgaris Plantae, Angiosperms, Eudicots, Caryophyllales, Amaranthaceae, Betoideae, Beta, Beta vulgaris After morphological characters, scientists used enzymes and proteins to classify plants and hence to determine how related they were via evolution (phylogeny) Present day we use genetic data (DNA, RNA, mDNA, even chloroplast DNA) to produce phylogenetic trees Plant part modifications ● Brassica genus ● ● Roots (swede, turnips) ● Stems (kohl rabi) ● Leaves (cabbages, Brussels Sprouts-buds) ● Flowers (cauliflower, broccoli) ● Seeds (mustards, oil seed rape) Plant hormones / PGR's / phytohormones ● Chemicals present in very low concentrations that promote and influence the growth, development, and differentiation of cells and tissues. ● NB. differences to animal hormones! (no glands, no nervous system, no circulatory system, no specific mode of action) ● Not all plant cells respond to hormones, but those that do are programmed to respond at specific points in their growth cycle ● Five main classes of PGR's ● Abscisic acid (ABA) ● Role in abscission, winter bud dormancy (dormin) ● ABA-mediated signalling also plays an important part in plant responses to environmental stress and plant pathogens ● ABA is also produced in the roots in response to decreased water potential. -
Characterization of the Transcriptome of the Xerophyte Ammopiptanthus Mongolicus Leaves Under Drought Stress by 454 Pyrosequencing
RESEARCH ARTICLE Characterization of the Transcriptome of the Xerophyte Ammopiptanthus mongolicus Leaves under Drought Stress by 454 Pyrosequencing Tao Pang1☯, Lili Guo1,2☯, Donghwan Shim3,4☯, Nathaniel Cannon3, Sha Tang1, Jinhuan Chen1, Xinli Xia1*, Weilun Yin1*, John E. Carlson3* 1 National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Key Laboratory for Silviculture and Conservation, Beijing Forestry University, Beijing, People’s Republic of China, 2 College of Agricultural, Henan University of Science and Technology, Luoyang, People’s Republic of China, 3 The Schatz Center for Tree Molecular Genetics, Department Ecosystem Science and Management, Pennsylvania State University, University Park, Pennsylvania, United States of America, 4 Department of Forest Genetic Resources, Korea Forest Research Institute, Suwon 441–350, Korea ☯ These authors contributed equally to this work. * [email protected] (XX); [email protected] (WY); [email protected] (JEC) OPEN ACCESS Abstract Citation: Pang T, Guo L, Shim D, Cannon N, Tang S, Chen J, et al. (2015) Characterization of the Transcriptome of the Xerophyte Ammopiptanthus Background mongolicus Leaves under Drought Stress by 454 Pyrosequencing. PLoS ONE 10(8): e0136495. Ammopiptanthus mongolicus (Maxim. Ex Kom.) Cheng f., an endangered ancient legume doi:10.1371/journal.pone.0136495 species, endemic to the Gobi desert in north-western China. As the only evergreen broad- Editor: Mukesh Jain, National Institute of Plant leaf shrub in this area, A. mongolicus plays an important role in the region’s ecological-envi- Genome Research, INDIA ronmental stability. Despite the strong potential of A. mongolicus in providing new insights Received: February 17, 2015 on drought tolerance, sequence information on the species in public databases remains Accepted: August 4, 2015 scarce. -
( 12 ) Patent Application Publication ( 10 ) Pub . No .: US 2020/0407740 A1 CUI Et Al
US 20200407740A1 IN ( 19 ) United States ( 12 ) Patent Application Publication ( 10 ) Pub . No .: US 2020/0407740 A1 CUI et al. ( 43 ) Pub . Date : Dec. 31 , 2020 ( 54 ) MATERIALS AND METHODS FOR Publication Classification CONTROLLING BUNDLE SHEATH CELL ( 51 ) Int. CI . FATE AND FUNCTION IN PLANTS C12N 15/82 ( 2006.01 ) ( 71 ) Applicant: FLORIDA STATE UNIVERSITY ( 52 ) U.S. CI . RESEARCH FOUNDATION , INC . , CPC C12N 15/8225 ( 2013.01 ) ; C12N 15/8269 Tallahassee, FL ( US ) ( 2013.01 ) ; C12N 15/8261 ( 2013.01 ) ( 57 ) ABSTRACT ( 72 ) Inventors : HONGCHANG CUI , The subject invention concerns materials and methods for TALLAHASSEE , FL (US ); DANYU increasing and / or improving photosynthetic efficiency in KONG , BLACKSBURG , VA (US ); plants, and in particular, C3 plants. In particular, the subject YUELING HAO , TALLAHASSEE , FL invention provides for means to increase the number of ( US ) bundle sheath ( BS ) cells in plants , to improve the efficiency of photosynthesis in BS cells , and to increase channels between BS and mesophyll ( M ) cells . In one embodiment, a ( 21 ) Appl . No .: 17 / 007,043 method of the invention concerns altering the expression level or pattern of one or more of SHR , SCR , and / or SCL23 in a plant. The subject invention also pertains to genetically ( 22 ) Filed : Aug. 31 , 2020 modified plants , and in particular, C3 plants, that exhibit increased expression of one or more of SHR , SCR , and / or SCL23 . Transformed and transgenic plants are contemplated Related U.S. Application Data within the scope of the invention . The subject invention also ( 62 ) Division of application No. 14 / 898,046 , filed on Dec. concerns methods for increasing expression of photosyn 11 , 2015 , filed as application No. -
Isotopic Approaches to Quantify Root Water Uptake and Redistribution
Isotopic approaches to quantify root water uptake and redistribution: a review and comparison of methods Youri Rothfuss1, Mathieu Javaux1,2,3 1Institute of Bio- and Geosciences, IBG-3 Agrosphere, Forschungszentrum Jülich GmbH, Jülich, 52425, Germany 5 2Earth and Life Institute, Environnemental Sciences, Université catholique de Louvain (UCL), Louvain-la-Neuve, 1348, Belgium 3Department of Land, Air and Water Resources, University of California Davis, Davis, California, 95616, USA. Correspondence to: Youri Rothfuss ([email protected]) Abstract. Plant root water uptake (RWU) and release (i.e., hydraulic redistribution – HR, and its particular case hydraulic 10 lift – HL) have been documented for the past five decades from water stable isotopic analysis. By comparing the (hydrogen or oxygen) stable isotopic composition of plant xylem water to those of potential contributive water sources (e.g., water from different soil layers, groundwater, water from recent precipitation or from a nearby stream) studies could determine the relative contributions of these water sources to RWU. Other studies have confirmed the existence of HR and HL from the isotopic analysis of the plant xylem water following a labelling pulse. 15 In this paper, the different methods used for locating / quantifying relative contributions of water sources to RWU (i.e., graphical inference, statistical (e.g., Bayesian) multi-source linear mixing models) are reviewed with emphasis on their respective advantages and drawbacks. The graphical and statistical methods are tested against a physically based analytical RWU model during a series of virtual experiments differing in the depth of the groundwater table, the soil surface water status, and the plant transpiration rate value.