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Genetic Diversity of False Gharial Tomistoma Schlegelii Based on Cytochrome B-Control Region (Cyt B-CR) Gene Analysis
Genetic Diversity of False Gharial Tomistoma schlegelii based on Cytochrome b-Control Region (cyt b-CR) Gene Analysis Muhamad Farhan Bin Badri (34975) Bachelor of Science with Honours (Aquatic Resource Science and Management) 2015 UNIVERSITJ MALAYSIASARAWAK Grade A- Please tick <V) Final Year Project Report Masters PhD DECIA RATJON OF ORIGINAL WORK This declaration is made on the... .;l... day of.. .. ;Jr.,-.v!y" year .....;;;,;;J].C;S: Stude nt's Declaration: I .. _ ~~_~!l.~_~.I? .f!J~_~~ __ . ~?.: ___~~e!: .. .J..3_ f:{~~ _./. £~... ____ .....-.---- ..----- ....-------.----......--.--..--- (PLEASE INDIC TE NAME. MATRIC NO. AND FACULTy) hereby declare that the work entitled. .~ft~ _ !l! ~~.'!.!J - f!~ - ~ b.':>!~.I-- !: --~~-~ ['JJ'.~! - .b.i.'.J--~:! ..~L~.":~B - ~ !.~.- ~ -~~?: is my original work. I have not copied from any other students' work or from any other sources with tbe exception where due reference or acknowledgement is made explicitly in th e text. nor has any part of the work been written for me by another person. r / 7 / :»')1 ~ MV~fI~AO F~IlH~'" p,Itv Il/!PlT G4'11S') Date submitted Name of the student (Mabic No.) Supervisor's Declaration: I,-- -OP,- - ~!!~~..~~!!.. !!~~_~ _ ...............__ .__ (SUPERVISOR'S NAME), herehy certify that the work entitled, q~~~-- ~.'".'!~~ - ~~~ - ~~~.~X: - ~~-~~i. ~}!lg-"'-- ~t_<;t ·~~jdTITLE ) was prepared by the aforementioned or above mentioned student, and was submitted to the "FACULTY' as a * partiaJJfuil fulfillment for the conferment of ._.¥h__J!~!.~..$.~~~_~L ~~A._ ~f!~~~- -
Phylogenetic Taphonomy: a Statistical and Phylogenetic
Drumheller and Brochu | 1 1 PHYLOGENETIC TAPHONOMY: A STATISTICAL AND PHYLOGENETIC 2 APPROACH FOR EXPLORING TAPHONOMIC PATTERNS IN THE FOSSIL 3 RECORD USING CROCODYLIANS 4 STEPHANIE K. DRUMHELLER1, CHRISTOPHER A. BROCHU2 5 1. Department of Earth and Planetary Sciences, The University of Tennessee, Knoxville, 6 Tennessee, 37996, U.S.A. 7 2. Department of Earth and Environmental Sciences, The University of Iowa, Iowa City, Iowa, 8 52242, U.S.A. 9 email: [email protected] 10 RRH: CROCODYLIAN BITE MARKS IN PHYLOGENETIC CONTEXT 11 LRH: DRUMHELLER AND BROCHU Drumheller and Brochu | 2 12 ABSTRACT 13 Actualistic observations form the basis of many taphonomic studies in paleontology. 14However, surveys limited by environment or taxon may not be applicable far beyond the bounds 15of the initial observations. Even when multiple studies exploring the potential variety within a 16taphonomic process exist, quantitative methods for comparing these datasets in order to identify 17larger scale patterns have been understudied. This research uses modern bite marks collected 18from 21 of the 23 generally recognized species of extant Crocodylia to explore statistical and 19phylogenetic methods of synthesizing taphonomic datasets. Bite marks were identified, and 20specimens were then coded for presence or absence of different mark morphotypes. Attempts to 21find statistical correlation between trace types, marking animal vital statistics, and sample 22collection protocol were unsuccessful. Mapping bite mark character states on a eusuchian 23phylogeny successfully predicted the presence of known diagnostic, bisected marks in extinct 24taxa. Predictions for clades that may have created multiple subscores, striated marks, and 25extensive crushing were also generated. Inclusion of fossil bite marks which have been positively 26associated with extinct species allow this method to be projected beyond the crown group. -
An Eocene Tomistomine from Peninsular Thailand Jérémy Martin, Komsorn Lauprasert, Haiyan Tong, Varavudh Suteethorn, Eric Buffetaut
An Eocene tomistomine from peninsular Thailand Jérémy Martin, Komsorn Lauprasert, Haiyan Tong, Varavudh Suteethorn, Eric Buffetaut To cite this version: Jérémy Martin, Komsorn Lauprasert, Haiyan Tong, Varavudh Suteethorn, Eric Buffetaut. An Eocene tomistomine from peninsular Thailand. Annales de Paléontologie, Elsevier Masson, 2019, 10.1016/j.annpal.2019.03.002. hal-02121886 HAL Id: hal-02121886 https://hal.archives-ouvertes.fr/hal-02121886 Submitted on 6 May 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. An Eocene tomistomine from peninsular Thailand Un tomistominé éocène de la peninsule Thaïlandaise Jeremy E. Martin1, Komsorn Lauprasert2, Haiyan Tong2, Varavudh Suteethorn2 and Eric Buffetaut3 1Laboratoire de Géologie de Lyon: Terre, Planète et Environnement, UMR CNRS 5276 (CNRS, ENS, Université Lyon 1), Ecole Normale Supérieure de Lyon, 69364 Lyon Cedex 07, France, email: [email protected] 2Palaeontological Research and Education Centre, Mahasarakham University, Khamrieng, 44150 Thailand 3Laboratoire de Géologie de l’Ecole Normale Supérieure, CNRS (UMR 8538), 24 rue Lhomond, Paris Cedex 05, 75231, France Abstract Skull and mandibular elements of a tomistomine crocodilian are described from the late Eocene to early Oligocene lignite seams of Krabi, peninsular Thailand. -
Phylogenetic Position of the Crocodylian Megadontosuchus Arduini and Tomistomine Palaeobiogeography
Phylogenetic position of the crocodylian Megadontosuchus arduini and tomistomine palaeobiogeography PAOLO PIRAS, MASSIMO DELFINO, LETIZIA DEL FAVERO, and TASSOS KOTSAKIS Piras, P., Delfino, M., Del Favero, L., and Kotsakis, T. 2007. Phylogenetic position of the crocodylian Megadontosuchus arduini and tomistomine palaeobiogeography. Acta Palaeontologica Polonica 52 (2): 315–328. A cladistic analysis of Megadontosuchus arduini from the middle Eocene of Monte Duello (NE Italy) confirms its tomistomine relationships, but the low number of scorable characters determines a low resolution within the tomistomine clade. However, Megadontosuchus is clearly distinct from the other Eocene European or North African tomistomines, in having a moderate elongated but robust rostrum, massive maxillary and dentary teeth and large supratemporal fenestrae. The rostrum and teeth characteristics could indicate that M. arduini had a degree of feeding specialization intermediate between Maroccosuchus zennaroi and the Eocene European tomistomines. A summary of tomistomine palaeobiogeo− graphy suggests that despite only one species with a rather restricted range survives at present, such a clade had a glorious past with a world wide distribution documented by a conspicuous fossil record that starts at least in the early Eocene. At present, a detailed knowledge of tomistomine palaeobiogeography is hindered by the lack of modern taxonomic revisions of some fossil remains and therefore by the poor understanding of phylogenetic relationships. Key words: Crocodylidae, -
117 Anuário Do Instituto De Geociências
Anuário do Instituto de Geociências - UFRJ www.anuario.igeo.ufrj.br Huge Miocene Crocodilians From Western Europe: Predation, Comparisons with the “False Gharial” and Size Crocodilos Miocênicos de Grande Tamanho do Oeste Europeu: Predação, Analogias com “Falsos Gaviais” e Tamanho Miguel Telles Antunes 1, 2, 3 1Academia das Ciências de Lisboa, R. da Academia das Ciências, 19/ 1249-122 Lisboa, Portugal 2 European Academy of Sciences, Arts and Humanities, Paris. 3 CICEGE, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa E-mail: [email protected] Recebido em: 15/09/2017 Aprovado em: 13/10/2017 DOI: http://dx.doi.org/10.11137/2017_3_117_130 Resumo Dentes de mastodonte mordidos, inéditos, demonstram que a predação pelos enormes Tomistoma lusitanica, que existiram na região de Lisboa e Península de Setúbal do Miocénico inferior ao início do superior, incluía os maiores mamíferos terrestres de então: os mastodontes Gomphotherium angustidens, mesmo adultos e senis, um dos quais teria, em estimativa não rigorosa, uns 50 anos à morte. São discutidos efeitos de dentadas, bem como os caracteres de impressões devidas ao impacte, intenso atrito e eventual esmagamento. A dentição de indivíduos de porte muito grande desempenharia papel de preensão e, também, de verdadeiros moinhos de dentes para triturar peças duras. Efeitos de esmagamento, não derivado de causas tectónicas, foram também observados num suídeo. Os resultados podem significar que a razão básica da ictiofagia prevalecente nos “falsos-gaviais” actuais, Tomistoma schlegelii, pode estar relacionada com a pressão humana que os inibe de atingirem o máximo tamanho possível e, por conseguinte, de capturarem presas maiores. É realçada a importância da imigração a partir da Ásia e das afinidades biogeográficas, a qual parece óbvia dada a presença simultânea de Tomistoma e Gavialis no extremo ocidental da Eurásia. -
Phylogenetic Analysis of a New Morphological Dataset Elucidates the Evolutionary History of Crocodylia and Resolves the Long-Standing Gharial Problem
Phylogenetic analysis of a new morphological dataset elucidates the evolutionary history of Crocodylia and resolves the long-standing gharial problem Jonathan P. Rio1 and Philip D. Mannion2* 1Department of Earth Science and Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK 2Department of Earth Sciences, University College London, Gower Street, London, WC1E 6BT, UK *Corresponding author (email address: [email protected]) ABSTRACT First appearing in the latest Cretaceous, Crocodylia is a clade of mostly semi-aquatic, predatory reptiles, defined by the last common ancestor of extant alligators, caimans, crocodiles, and gharials. Despite large strides in resolving extant and fossil crocodylian interrelationships over the last three decades, several outstanding problems persist in crocodylian systematics. Most notably, there has been persistent discordance between morphological and molecular datasets surrounding the affinities of the extant gharials, Gavialis gangeticus and Tomistoma schlegelii. Whereas molecular data consistently support a sister relationship between the extant gharials, which appear to be more closely related to crocodylids than to alligatorids, morphological data indicate that Gavialis is the sister taxon to all other extant crocodylians. Here we present a new morphological dataset for Crocodylia, based on a critical reappraisal of published crocodylian character data matrices and extensive first-hand observations of a global sample of crocodylians. This comprises the most taxonomically comprehensive crocodylian dataset to date (144 OTUs scored for 330 characters) and includes a new, illustrated character list with modifications to the construction and scoring of characters, and 46 novel characters. Under a maximum parsimony framework, our analyses robustly recover Gavialis as more closely related to Tomistoma than to other extant crocodylians for the first time based on morphology alone. -
Leidyosuchus (Crocodylia: Alligatoroidea) from the Upper Cretaceous Kaiparowits Formation (Late Campanian) of Utah, USA
PaleoBios 30(3):72–88, January 31, 2014 © 2014 University of California Museum of Paleontology Leidyosuchus (Crocodylia: Alligatoroidea) from the Upper Cretaceous Kaiparowits Formation (late Campanian) of Utah, USA ANDREW A. FARKE,1* MADISON M. HENN,2 SAMUEL J. WOODWARD,2 and HEENDONG A. XU2 1Raymond M. Alf Museum of Paleontology, 1175 West Baseline Road, Claremont, CA 91711 USA; email: afarke@ webb.org. 2The Webb Schools, 1175 West Baseline Road, Claremont, CA 91711 USA Several crocodyliform lineages inhabited the Western Interior Basin of North America during the late Campanian (Late Cretaceous), with alligatoroids in the Kaiparowits Formation of southern Utah exhibiting exceptional diversity within this setting. A partial skeleton of a previously unknown alligatoroid taxon from the Kaiparowits Formation may represent the fifth alligatoroid and sixth crocodyliform lineage from this unit. The fossil includes the lower jaws, numerous osteoderms, vertebrae, ribs, and a humerus. The lower jaw is generally long and slender, and the dentary features 22 alveoli with conical, non-globidont teeth. The splenial contributes to the posterior quarter of the mandibu- lar symphysis, which extends posteriorly to the level of alveolus 8, and the dorsal process of the surangular is forked around the terminal alveolus. Dorsal midline osteoderms are square. This combination of character states identifies the Kaiparowits taxon as the sister taxon of the early alligatoroid Leidyosuchus canadensis from the Late Cretaceous of Alberta, the first verified report of theLeidyosuchus (sensu stricto) lineage from the southern Western Interior Basin. This phylogenetic placement is consistent with at least occasional faunal exchanges between northern and southern parts of the Western Interior Basin during the late Campanian, as noted for other reptile clades. -
UC Berkeley Paleobios
UC Berkeley PaleoBios Title Leidyosuchus (Crocodylia: Alligatoroidea) from the Upper Cretaceous Kaiparowits Formation (late Campanian) of Utah, USA Permalink https://escholarship.org/uc/item/0q11x9vs Journal PaleoBios, 30(3) ISSN 0031-0298 Authors Farke, Andrew A. Henn, Madison M. Woodward, Samuel J. et al. Publication Date 2014-01-30 DOI 10.5070/P9303016247 Peer reviewed eScholarship.org Powered by the California Digital Library University of California PaleoBios 30(3):72–88, January 31, 2014 © 2014 University of California Museum of Paleontology Leidyosuchus (Crocodylia: Alligatoroidea) from the Upper Cretaceous Kaiparowits Formation (late Campanian) of Utah, USA ANDREW A. FARKE,1* MADISON M. HENN,2 SAMUEL J. WOODWARD,2 and HEENDONG A. XU2 1Raymond M. Alf Museum of Paleontology, 1175 West Baseline Road, Claremont, CA 91711 USA; email: afarke@ webb.org. 2The Webb Schools, 1175 West Baseline Road, Claremont, CA 91711 USA Several crocodyliform lineages inhabited the Western Interior Basin of North America during the late Campanian (Late Cretaceous), with alligatoroids in the Kaiparowits Formation of southern Utah exhibiting exceptional diversity within this setting. A partial skeleton of a previously unknown alligatoroid taxon from the Kaiparowits Formation may represent the fifth alligatoroid and sixth crocodyliform lineage from this unit. The fossil includes the lower jaws, numerous osteoderms, vertebrae, ribs, and a humerus. The lower jaw is generally long and slender, and the dentary features 22 alveoli with conical, non-globidont teeth. The splenial contributes to the posterior quarter of the mandibu- lar symphysis, which extends posteriorly to the level of alveolus 8, and the dorsal process of the surangular is forked around the terminal alveolus. -
Genus/Species Skull Ht Lt Wt Time Range Adzhosuchus U.Jurassic Mongolia A. Fuscus U.Jurassic Mongolia Aegyptosuchus U.Cretaceous Egypt A
Genus/Species Skull Ht Lt Wt Time Range Adzhosuchus U.Jurassic Mongolia A. fuscus U.Jurassic Mongolia Aegyptosuchus U.Cretaceous Egypt A. peyeri Cenomanian Egypt Aelodon see Aeolodon Aeollodon see Aeolodon Aeolodon U.Jurassic Germany A. priscus 16 cm 1.2 m? Kimmeridgian Germany Aggiosaurus U.Jurassic France A. nicaeensis U.Jurassic France Aigialosuchus U.Cretaceous Sweden A. villandensis Campanian Sweden Akanthosuchus Paleocene W USA A. langstoni Torrejonian New Mexico(US) Akantosuchus see Akanthosuchus A. langstoni see Akanthosuchus langstoni Albertochampsa 20 cm 1.6 m? U.Cretaceous Canada A. langstoni 20 cm 1.6 m? Campanian Alberta(Cnda) Aligator see Alligator Alligator 5.8 m Oligocene-Recent N America,China A. ameghinoi A. australis see Proalligator paranensis? A. cuvieri see Alligator mississippiensis A. darwini see Diplocynodon darwini A. gaudryi see Arambourgia gaudryi A. hantoniensis see Diplocynodon hantoniensis A. helois see Alligator mississippiensis A. heterodon see Crocodylus heterodon & Allognathosuchus heterodon A. lacordairei see Crocodylus acutus A. lucius see Alligator mississippiensis A. lutescens see Caiman lutescens A. mcgrewi 2 m Barstovian Nebraska(US) A. mefferdi Clarendonian Nebraska(US) A. mississipiensis living American Alligator M.Miocene-Recent Florida,Nebraska,Missouri,Georgia(US) A. olseni 25 cm 2.5 m? Hemingfordian Florida(US) A. parahybensis Pliocene Sao Paulo(Brazil) A. prenasalis 76 cm Chadronian S Dakota(US) A. sp. Arikareean Texas(US) A. sp. Barstovian Texas(US) A. sp. Duchesnean Texas(US) A. sp. Miocene Nebraska(US) A. styriacus see Crocodylus styriacus A. thompsoni(thomsoni) 36 cm 2.15 m Barstovian Nebraska(US) A. visheri 2 m Chadronian S Dakota(US) Alligatorellus 30 cm U.Jurassic Germany A. -
A New Skeleton of the Neosuchian Crocodyliform Goniopholis with New Material from the Morrison Formation of Wyoming
A NEW SKELETON OF THE NEOSUCHIAN CROCODYLIFORM GONIOPHOLIS WITH NEW MATERIAL FROM THE MORRISON FORMATION OF WYOMING by Bruce R. Erickson MONOGRAPH VOLUME 10: PALEONTOLOGY Published by THE SCIENCE MUSEUM OF MINNESOTA SAINT PAUL, MINNESOTA 55102 Frontispiece: Flesh restoration of Goniopholis. CONTENTS ABSTRACT ..................................................................7 INTRODUCTION .............................................................7 SYSTEMATIC PALEONTOLOGY ................................................7 DESCRIPTION ................................................................7 SCALATION ................................................................14 TAPHONOMY ...............................................................16 ACKNOWLEDGMENTS .......................................................19 TABLE 1 ....................................................................25 TABLE 2 ....................................................................25 TABLE 3 ....................................................................26 REFERENCES ...............................................................27 MONOGRAPH VOLUME 10: PALEONTOLOGY International Standard Book Number: 911338-90-X A NEW SKELETON of THE NEOSUCHIAN CROCODYLIFORM GONIOPHOLIS WITH NEW MATERIAL FROM THE MORRISON FORMATION OF WYOMING Bruce R. Erickson Fitzpatrick Chair of Paleontology MONOGRAPH VOLUME 10: PALEONTOLOGY The Science Museum of Minnesota 120 West Kellogg Blvd. Saint Paul, Minnesota 55102 USA. December 1, 2016 SCIENCE MUSEUM OF MINNESOTA -
A New Horned Crocodile from the Plio- Pleistocene Hominid Sites at Olduvai Gorge, Tanzania
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/41657431 A New Horned Crocodile from the Plio- Pleistocene Hominid Sites at Olduvai Gorge, Tanzania Article in PLoS ONE · February 2010 DOI: 10.1371/journal.pone.0009333 · Source: PubMed CITATIONS READS 43 271 4 authors: Christopher Brochu Jackson K Njau University of Iowa Indiana University Bloomington 106 PUBLICATIONS 3,595 CITATIONS 52 PUBLICATIONS 701 CITATIONS SEE PROFILE SEE PROFILE Robert J. Blumenschine Llewellyn D Densmore Palaeontological Scientific Trust (PAST) Texas Tech University 74 PUBLICATIONS 5,184 CITATIONS 370 PUBLICATIONS 1,850 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Vitellogenin as a biomarker for endocrine disruptors. View project Fossil birds from Middle Bed II, Olduvai Gorge, Tanzania View project All content following this page was uploaded by Christopher Brochu on 27 February 2017. The user has requested enhancement of the downloaded file. A New Horned Crocodile from the Plio-Pleistocene Hominid Sites at Olduvai Gorge, Tanzania Christopher A. Brochu1*, Jackson Njau2,3, Robert J. Blumenschine4, Llewellyn D. Densmore5 1 Department of Geoscience, University of Iowa, Iowa City, Iowa, United States of America, 2 Human Evolution Research Center, Department of Integrative Biology, University of California, Berkeley, California, United States of America, 3 National Natural History Museum, Arusha, Tanzania, 4 Center for Human Evolutionary Studies, Department of Anthropology, Rutgers University, New Brunswick, New Jersey, United States of America, 5 Department of Biological Sciences, Texas Tech University, Lubbock, Texas, United States of America Abstract Background: The fossil record reveals surprising crocodile diversity in the Neogene of Africa, but relationships with their living relatives and the biogeographic origins of the modern African crocodylian fauna are poorly understood. -
Revision of the Crocodilians from the Oligocene of Monteviale, Italy, And
Revision of the crocodilians from the Oligocene of Monteviale, Italy, and the diversity of European eusuchians across the Eocene-Oligocene boundary Loredana Macaluso, Jérémy Martin, Letizia Del Favero, Massimo Delfino To cite this version: Loredana Macaluso, Jérémy Martin, Letizia Del Favero, Massimo Delfino. Revision of the crocodilians from the Oligocene of Monteviale, Italy, and the diversity of European eusuchians across the Eocene- Oligocene boundary. Journal of Vertebrate Paleontology, Society of Vertebrate Paleontology, 2019, pp.e1601098. 10.1080/02724634.2019.1601098. hal-02143821 HAL Id: hal-02143821 https://hal.archives-ouvertes.fr/hal-02143821 Submitted on 29 May 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Revision of the crocodilians from the Oligocene of Monteviale (NE Italy) and the diversity of European eusuchians across the Eocene-Oligocene boundary LOREDANA MACALUSO,*,1 JEREMY E. MARTIN,2 LETIZIA DEL FAVERO,3 and MASSIMO DELFINO1,4 1 Dipartimento di Scienze della Terra, Via Valperga Caluso 35, 10125, Turin, Italy, [email protected];