1 Viability of Symbiodinium Dispersed by the Stoplight Parrotfish
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Turbidity Criterion for the Protection of Coral Reef and Hardbottom Communities
DRAFT Implementation of the Turbidity Criterion for the Protection of Coral Reef and Hardbottom Communities Division of Environmental Assessment and Restoration Florida Department of Environmental Protection October 2020 Contents Section 1. Introduction ................................................................................................................................. 1 1.1 Purpose of Document .......................................................................................................................... 1 1.2 Background Information ..................................................................................................................... 1 1.3 Proposed Criterion and Rule Language .............................................................................................. 2 1.4 Threatened and Endangered Species Considerations .......................................................................... 5 1.5 Outstanding Florida Waters (OFW) Considerations ........................................................................... 5 1.6 Natural Factors Influencing Background Turbidity Levels ................................................................ 7 Section 2. Implementation in Permitting ..................................................................................................... 8 2.1 Permitting Information ........................................................................................................................ 8 2.2 Establishing Baseline (Pre-project) Levels ........................................................................................ -
Regional Studies in Marine Science Reef Condition and Protection Of
Regional Studies in Marine Science 32 (2019) 100893 Contents lists available at ScienceDirect Regional Studies in Marine Science journal homepage: www.elsevier.com/locate/rsma Reef condition and protection of coral diversity and evolutionary history in the marine protected areas of Southeastern Dominican Republic ∗ Camilo Cortés-Useche a,b, , Aarón Israel Muñiz-Castillo a, Johanna Calle-Triviño a,b, Roshni Yathiraj c, Jesús Ernesto Arias-González a a Centro de Investigación y de Estudios Avanzados del I.P.N., Unidad Mérida B.P. 73 CORDEMEX, C.P. 97310, Mérida, Yucatán, Mexico b Fundación Dominicana de Estudios Marinos FUNDEMAR, Bayahibe, Dominican Republic c ReefWatch Marine Conservation, Bandra West, Mumbai 400050, India article info a b s t r a c t Article history: Changes in structure and function of coral reefs are increasingly significant and few sites in the Received 18 February 2019 Caribbean can tolerate local and global stress factors. Therefore, we assessed coral reef condition Received in revised form 20 September 2019 indicators in reefs within and outside of MPAs in the southeastern Dominican Republic, considering Accepted 15 October 2019 benthic cover as well as the composition, diversity, recruitment, mortality, bleaching, the conservation Available online 18 October 2019 status and evolutionary distinctiveness of coral species. In general, we found that reef condition Keywords: indicators (coral and benthic cover, recruitment, bleaching, and mortality) within the MPAs showed Coral reefs better conditions than in the unprotected area (Boca Chica). Although the comparison between the Caribbean Boca Chica area and the MPAs may present some spatial imbalance, these zones were chosen for Biodiversity the purpose of making a comparison with a previous baseline presented. -
Federal Register/Vol. 85, No. 229/Friday, November 27, 2020/Proposed Rules
76302 Federal Register / Vol. 85, No. 229 / Friday, November 27, 2020 / Proposed Rules DEPARTMENT OF COMMERCE required fields, and enter or attach your Background comments. We listed twenty coral species as National Oceanic and Atmospheric Instructions: You must submit threatened under the ESA effective Administration comments by the above to ensure that October 10, 2014 (79 FR 53851, we receive, document, and consider September 10, 2014). Five of the corals 50 CFR Parts 223 and 226 them. Comments sent by any other occur in the Caribbean: Orbicella [Docket No. 200918–0250] method or received after the end of the annularis, O. faveolata, O. franksi, comment period, may not be Dendrogyra cylindrus, and RIN 0648–BG26 considered. All comments received are Mycetophyllia ferox. The final listing a part of the public record and will determinations were all based on the Endangered and Threatened Species; generally be posted to http:// best scientific and commercial Critical Habitat for the Threatened www.regulations.gov without change. information available on a suite of Caribbean Corals All Personal Identifying Information (for demographic, spatial, and susceptibility example, name, address, etc.) components that influence the species’ AGENCY: National Marine Fisheries vulnerability to extinction in the face of Service (NMFS), National Oceanic and voluntarily submitted by the commenter continuing threats over the foreseeable Atmospheric Administration (NOAA), may be publicly accessible. Do not future. All of the species had undergone Commerce. submit Confidential Business Information or otherwise sensitive or population declines and are susceptible ACTION: Proposed rule; request for protected information. to multiple threats, including: Ocean comments. NMFS will accept anonymous warming, diseases, ocean acidification, ecological effects of fishing, and land- SUMMARY: We, NMFS, propose to comments (enter ‘‘N/A’’ in the required based sources of pollution. -
Orbicella Annularis )
s e r i a ) d s i e l n s ) b i i r a C i s i a d l / v e u s m L n i e k n t i A i l a w l ( . a M y r Corail étoile massif I O a o r N c e W d s A s (Orbicella annularis ) i e n u d o a l L Classification s p e t Autres noms : Montastraea annularis, s p o r e Boulder star coral (EN) s Phylum Cnidaires ( Cnidaria ) G ( E Classe Anthozoaires ( Anthozoa ) sp èc Ordre Scléractiniaires ( Scleractinia ) e e m gé Famille Merulinidés ( Merulinidae ) arine proté Statut Liste Rouge UICN – mondial : en danger d’extinction I ) a dentification i d 1 e n m i Taille : colonies jusqu’à 3 m d’envergure k i n w ( Teinte : brun-doré à brun-roux ; plus rarement grise ou verte A n extrémité supérieure en forme de A Aspect : colonnes longues et épaisses à l’ O dôme ou nodule ; colonnes reliées entre elles qu’à la base ; l’ensemble forme N des monticules massifs et irréguliers n Squelette (ou corallites) : bouts protubérants de manière plus ou moins marquée ; symétrie radiale ; 2,1-2,7 mm de diamètre ; 24 septes par calice ; petites corallites en forme d’étoile, espacées de 1-1,2 mm les unes des autres ) a i Cycle de vie d 2 e m i n k Longévité : inconnue mais estimée supérieure à 10 ans voir jusqu’à 100 ans pour i w ( une colonie A A n O Maturité sexuelle inconnue mais temps de génération estimé à 10 ans N n Alimentation composés carbonés (photosynthèse des algues symbiotiques) et zooplanctonique n Reproduction : sexuée et asexuée ; hermaphrodisme ; tous les ans entre mi-août et septembre Comportement 1 - Colonie de O. -
Supplementary Material
Supplementary Material SM1. Post-Processing of Images for Automated Classification Imagery was collected without artificial light and using a fisheye lens to maximise light capture, therefore each image needed to be processed prior annotation in order to balance colour and to minimise the non-linear distortion introduced by the fisheye lens (Figure S1). Initially, colour balance and lenses distortion correction were manually applied on the raw images using Photoshop (Adobe Systems, California, USA). However, in order to optimize the manual post-processing time of thousands of images, more recent images from the Indian Ocean and Pacific Ocean were post- processed using compressed images (jpeg format) and an automatic batch processing in Photoshop and ImageMagick, the latter an open-source software for image processing (www.imagemagick.org). In view of this, the performance of the automated image annotation on images without colour balance was contrasted against images colour balanced using manual post-processing (on raw images) and the automatic batch processing (on jpeg images). For this evaluation, the error metric described in the main text (Materials and Methods) was applied to the images from following regions: the Maldives and the Great Barrier Reef (Figures S2 and S3). We found that the colour balance applied regardless the type of processing (manual vs automatic) had an important beneficial effect on the performance of the automated image annotation as errors were reduced for critical labels in both regions (e.g., Algae labels; Figures S2 and S3). Importantly, no major differences in the performance of the automated annotations were observed between manual and automated adjustments for colour balance. -
Corals Regulate the Distribution and Abundance of Symbiodiniaceae
www.nature.com/scientificreports OPEN Corals regulate the distribution and abundance of Symbiodiniaceae and biomolecules in response to changing water depth and sea surface temperature Mayandi Sivaguru1,2,11*, Lauren G. Todorov1,3,11, Courtney E. Fouke1,4, Cara M. O. Munro1,5, Kyle W. Fouke1,6, Kaitlyn E. Fouke1,4,7, Melinda E. Baughman1 & Bruce W. Fouke1,2,8,9,10* The Scleractinian corals Orbicella annularis and O. faveolata have survived by acclimatizing to environmental changes in water depth and sea surface temperature (SST). However, the complex physiological mechanisms by which this is achieved remain only partially understood, limiting the accurate prediction of coral response to future climate change. This study quantitatively tracks spatial and temporal changes in Symbiodiniaceae and biomolecule (chromatophores, calmodulin, carbonic anhydrase and mucus) abundance that are essential to the processes of acclimatization and biomineralization. Decalcifed tissues from intact healthy Orbicella biopsies, collected across water depths and seasonal SST changes on Curaçao, were analyzed with novel autofuorescence and immunofuorescence histology techniques that included the use of custom antibodies. O. annularis at 5 m water depth exhibited decreased Symbiodiniaceae and increased chromatophore abundances, while O. faveolata at 12 m water depth exhibited inverse relationships. Analysis of seasonal acclimatization of the O. faveolata holobiont in this study, combined with previous reports, suggests that biomolecules are diferentially modulated during transition from cooler to warmer SST. Warmer SST was also accompanied by decreased mucus production and decreased Symbiodiniaceae abundance, which is compensated by increased photosynthetic activity enhanced calcifcation. These interacting processes have facilitated the remarkable resiliency of the corals through geological time. -
Pseudosiderastrea Formosa Sp. Nov. (Cnidaria: Anthozoa: Scleractinia)
Zoological Studies 51(1): 93-98 (2012) Pseudosiderastrea formosa sp. nov. (Cnidaria: Anthozoa: Scleractinia) a New Coral Species Endemic to Taiwan Michel Pichon1, Yao-Yang Chuang2,3, and Chaolun Allen Chen2,3,4,* 1Museum of Tropical Queensland, 70-102 Flinders Street, Townsville 4810, Australia 2Biodiversity Research Center, Academia Sinica, Nangang, Taipei 115, Taiwan 3Institute of Oceanography, National Taiwan Univ., Taipei 106, Taiwan 4Institute of Life Science, National Taitung Univ., Taitung 904, Taiwan (Accepted September 1, 2011) Michel Pichon, Yao-Yang Chuang, and Chaolun Allen Chen (2012) Pseudosiderastrea formosa sp. nov. (Cnidaria: Anthozoa: Scleractinia) a new coral species endemic to Taiwan. Zoological Studies 51(1): 93-98. Pseudosiderastrea formosa sp. nov. is a new siderastreid scleractinian coral collected in several localities in Taiwan. It lives on rocky substrates where it forms encrusting colonies. Results of morphological observations and molecular genetic analyses are presented. The new species is described and compared to P. tayamai and Siderastrea savignyana, and its morphological and phylogenic affinities are discussed. http://zoolstud.sinica.edu.tw/Journals/51.1/93.pdf Key words: Pseudosiderastrea formosa sp. nov., New species, Scleractinia, Siderastreid, Western Pacific Ocean. A siderastreid scleractinian coral was Pseudosiderastrea, described as P. formosa sp. collected from several localities around Taiwan nov. and nearby islands, where it is relatively rare. The specimens present some morphological similarities with Pseudosiderastrea tayamai Yabe MATERIAL AND METHODS and Sugiyama, 1935, the only species hitherto known from that genus, and with Siderastrea Specimens were collected by scuba diving at savignyana Milne Edwards and Haime, 1849, Wanlitung (21°59'48"N, 120°42'10"E) and the outlet which is the sole representative in the Indian of the 3rd nuclear power plant (21°55'51.38"N, Ocean of the genus Siderastrea de Blainville, 120°44'46.82"E) on the southeastern coast 1830. -
Sharkcam Fishes
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Info Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2020. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition. Los Angeles: Explore.org Ocean Frontiers. 201 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 5.0. 24 February 2020. 2 Table of Contents Identification Images Species Profiles Additional Info Index TABLE OF CONTENTS SILVERY FISHES (23) ........................... 47 African Pompano ......................................... 48 FOREWORD AND INTRODUCTION .............. 6 Crevalle Jack ................................................. 49 IDENTIFICATION IMAGES ...................... 10 Permit .......................................................... 50 Sharks and Rays ........................................ 10 Almaco Jack ................................................. 51 Illustrations of SharkCam -
Coral Species ID
Coral Species ID Colony shape (branching, mound, plates, column, crust, etc) Colony surface (bumpy, smooth, ridges) Polyp/Corallite Size (small, big) Polyp/Corallite shape (round/elliptical, irregular, y- shaped, „ innies vs outies‟ ridge/valley) Polyp color (green, brown, tan, yellow, olive, red) Different Corallite Shapes and Sizes Examples of Massive Stony Corals Montastraea Montastraea Suleimán © W.Harrigan © faveolata cavernosa S. © Diploria strigosa Porites astreoides © M. White© Montastraea faveolata MFAV Small, round polyps Form very large mounds, plates or crusts (to 4-5 m /12-15 ft) © S. ThorntonS. © Montastraea faveolata MFAV Surfaces smooth, ridged, or with bumps aligned in vertical rows © W. Harrigan © M. Weber © R. Steneck Montastraea faveolata MFAV Colonies are flattened, massive- plates with smooth surfaces under conditions of low light. Montastrea annularis MANN How similar to M. faveolata Small polyps Smooth surface How different Colonies are subdivided into numerous mounds or columns with live polyps at their summits. Plates at colony bases under low light conditions. (to 3-4 m/9-12 ft) Which is which? M. annularis M. faveolata MANN MFAV Montastrea franksi MFRA How similar to M. faveolata Small polyps and bumps Close-up How different Some polyps in bumps are larger, irregularly shaped, and may lack zooxanthellae. More aggressive spatial competitor. © P. Humann Montastrea franksi MFRA How similar to M. faveolata Form mounds, short columns, crusts, and/or plates. How different Bumps are scattered over colony surface. (to 3-4 m/9-12 ft) Montastrea franksi MFRA Flattened, massive plate morphology in low light conditions. Solenastrea bournoni SBOU How similar to M. annularis Small round polyps Mounds How different Lighter colors in life, Walls of some polyps are more distinct (“outies”) Bumpy colony surface (to ~1/2 m/<20 in) Solenastrea hyades SHYA How similar to S. -
Reproduction and Population of Porites Divaricata at Rodriguez Key: the Lorf Ida Keys, USA John Mcdermond Nova Southeastern University, [email protected]
Nova Southeastern University NSUWorks HCNSO Student Theses and Dissertations HCNSO Student Work 1-1-2014 Reproduction and Population of Porites divaricata at Rodriguez Key: The lorF ida Keys, USA John McDermond Nova Southeastern University, [email protected] Follow this and additional works at: https://nsuworks.nova.edu/occ_stuetd Part of the Marine Biology Commons, and the Oceanography Commons Share Feedback About This Item NSUWorks Citation John McDermond. 2014. Reproduction and Population of Porites divaricata at Rodriguez Key: The Florida Keys, USA. Master's thesis. Nova Southeastern University. Retrieved from NSUWorks, Oceanographic Center. (17) https://nsuworks.nova.edu/occ_stuetd/17. This Thesis is brought to you by the HCNSO Student Work at NSUWorks. It has been accepted for inclusion in HCNSO Student Theses and Dissertations by an authorized administrator of NSUWorks. For more information, please contact [email protected]. NOVA SOUTHEASTERN UNIVERSITY OCEANOGRAPHIC CENTER Reproduction and Population of Porites divaricata at Rodriguez Key: The Florida Keys, USA By: John McDermond Submitted to the faculty of Nova Southeastern University Oceanographic Center in partial fulfillment of the requirements for the degree of Master of Science with a specialty in Marine Biology Nova Southeastern University i Thesis of John McDermond Submitted in Partial Fulfillment of the Requirements for the Degree of Masters of Science: Marine Biology Nova Southeastern University Oceanographic Center Major Professor: __________________________________ -
Sharkcam Fishes a Guide to Nekton at Frying Pan Tower by Erin J
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Information Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 3rd edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2018. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 3rd edition. Los Angeles: Explore.org Ocean Frontiers. 169 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 3.0. 26 January 2018. 2 Table of Contents Identification Images Species Profiles Additional Information Index TABLE OF CONTENTS FOREWORD AND INTRODUCTION.................................................................................. 8 IDENTIFICATION IMAGES .......................................................................................... 11 Sharks and Rays ................................................................................................................................... 11 Table: Relative frequency of occurrence and relative size .................................................................... -
Marine Ecology Progress Series 506:129
Vol. 506: 129–144, 2014 MARINE ECOLOGY PROGRESS SERIES Published June 23 doi: 10.3354/meps10808 Mar Ecol Prog Ser FREEREE ACCESSCCESS Long-term changes in Symbiodinium communities in Orbicella annularis in St. John, US Virgin Islands Peter J. Edmunds1,*, Xavier Pochon2,3, Don R. Levitan4, Denise M. Yost2, Mahdi Belcaid2, Hollie M. Putnam2, Ruth D. Gates2 1Department of Biology, California State University, 18111 Nordhoff Street, Northridge, CA 91330-8303, USA 2Hawaii Institute of Marine Biology, University of Hawaii, PO Box 1346, Kaneohe, HI 96744, USA 3Environmental Technologies, Cawthron Institute, 98 Halifax Street East, Private Bag 2, Nelson 7042, New Zealand 4Department of Biological Science, Florida State University, Tallahassee, FL 32306-4295, USA ABSTRACT: Efforts to monitor coral reefs rarely combine ecological and genetic tools to provide insight into the processes driving patterns of change. We focused on a coral reef at 14 m depth in St. John, US Virgin Islands, and used both sets of tools to examine 12 colonies of Orbicella (for- merly Montastraea) annularis in 2 photoquadrats that were monitored for 16 yr and sampled genetically at the start and end of the study. Coral cover and colony growth were assessed annu- ally, microsatellites were used to genetically identify coral hosts in 2010, and their Symbiodinium were genotyped using chloroplastic 23S (cloning) and nuclear ITS2 (cloning and pyrosequencing) in 1994 and 2010. Coral cover declined from 40 to 28% between 1994 and 2010, and 3 of the 12 sampled colonies increased in size, while 9 decreased in size. The relative abundance of Symbio- dinium clades varied among corals over time, and patterns of change differed between photo- quadrats but not among host genotypes.