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Master Thesis Functional Analysis of Physcomitrella Patens DEK1-LG3
Hamar Campus Faculty of Education and Natural Sciences Department of Natural Sciences and Technology Ahmed Khaleel Mekhlif Master thesis Functional analysis of Physcomitrella patens DEK1-LG3 domain Master's Degree in Applied and Commercial Biotechnology November 2015 2 Contents ACKNOWLEGEMENTS: .................................................................................................................. 4 ABSTRACT: ........................................................................................................................................ 5 1. INTRODUCTION ..................................................................................................................... 6 1.1 DEFECTIVE KERNEL 1 .............................................................................................................. 6 1.2 DEK1 FUNCTION: .................................................................................................................... 8 1.3 CALPAINS: ............................................................................................................................. 14 1.4 P. PATENS AS A MODEL FOR STUDYING DEVELOPMENT .......................................................... 15 1.4.1 Homologous Recombination ...................................................................................... 15 1.5 P. PATENS LIFE CYCLE: ........................................................................................................... 17 1.6 AIM OF STUDY ...................................................................................................................... -
Flora of New Zealand Mosses
FLORA OF NEW ZEALAND MOSSES FUNARIACEAE A.J. FIFE Fascicle 45 – APRIL 2019 © Landcare Research New Zealand Limited 2019. Unless indicated otherwise for specific items, this copyright work is licensed under the Creative Commons Attribution 4.0 International licence Attribution if redistributing to the public without adaptation: “Source: Manaaki Whenua – Landcare Research” Attribution if making an adaptation or derivative work: “Sourced from Manaaki Whenua – Landcare Research” See Image Information for copyright and licence details for images. CATALOGUING IN PUBLICATION Fife, Allan J. (Allan James), 1951– Flora of New Zealand : mosses. Fascicle 45, Funariaceae / Allan J. Fife. -- Lincoln, N.Z. : Manaaki Whenua Press, 2019. 1 online resource ISBN 978-0-947525-58-3 (pdf) ISBN 978-0-478-34747-0 (set) 1.Mosses -- New Zealand -- Identification. I. Title. II. Manaaki Whenua – Landcare Research New Zealand Ltd. UDC 582.344.55(931) DC 588.20993 DOI: 10.7931/B15MZ6 This work should be cited as: Fife, A.J. 2019: Funariaceae. In: Smissen, R.; Wilton, A.D. Flora of New Zealand – Mosses. Fascicle 45. Manaaki Whenua Press, Lincoln. http://dx.doi.org/10.7931/B15MZ6 Date submitted: 25 Oct 2017; Date accepted: 2 Jul 2018 Cover image: Entosthodon radians, habit with capsule, moist. Drawn by Rebecca Wagstaff from A.J. Fife 5882, CHR 104422. Contents Introduction..............................................................................................................................................1 Typification...............................................................................................................................................1 -
Economic and Ethnic Uses of Bryophytes
Economic and Ethnic Uses of Bryophytes Janice M. Glime Introduction Several attempts have been made to persuade geologists to use bryophytes for mineral prospecting. A general lack of commercial value, small size, and R. R. Brooks (1972) recommended bryophytes as guides inconspicuous place in the ecosystem have made the to mineralization, and D. C. Smith (1976) subsequently bryophytes appear to be of no use to most people. found good correlation between metal distribution in However, Stone Age people living in what is now mosses and that of stream sediments. Smith felt that Germany once collected the moss Neckera crispa bryophytes could solve three difficulties that are often (G. Grosse-Brauckmann 1979). Other scattered bits of associated with stream sediment sampling: shortage of evidence suggest a variety of uses by various cultures sediments, shortage of water for wet sieving, and shortage around the world (J. M. Glime and D. Saxena 1991). of time for adequate sampling of areas with difficult Now, contemporary plant scientists are considering access. By using bryophytes as mineral concentrators, bryophytes as sources of genes for modifying crop plants samples from numerous small streams in an area could to withstand the physiological stresses of the modern be pooled to provide sufficient material for analysis. world. This is ironic since numerous secondary compounds Subsequently, H. T. Shacklette (1984) suggested using make bryophytes unpalatable to most discriminating tastes, bryophytes for aquatic prospecting. With the exception and their nutritional value is questionable. of copper mosses (K. G. Limpricht [1885–]1890–1903, vol. 3), there is little evidence of there being good species to serve as indicators for specific minerals. -
Exploring the Role of CESA5 in the Synthesis of Cellulose Using Physcomitrella Patens Oumie Ceesay University of Rhode Island, [email protected]
University of Rhode Island DigitalCommons@URI Senior Honors Projects Honors Program at the University of Rhode Island 2013 Exploring the role of CESA5 in the synthesis of cellulose using Physcomitrella patens Oumie Ceesay University of Rhode Island, [email protected] Follow this and additional works at: http://digitalcommons.uri.edu/srhonorsprog Recommended Citation Ceesay, Oumie, "Exploring the role of CESA5 in the synthesis of cellulose using Physcomitrella patens" (2013). Senior Honors Projects. Paper 337. http://digitalcommons.uri.edu/srhonorsprog/337http://digitalcommons.uri.edu/srhonorsprog/337 This Article is brought to you for free and open access by the Honors Program at the University of Rhode Island at DigitalCommons@URI. It has been accepted for inclusion in Senior Honors Projects by an authorized administrator of DigitalCommons@URI. For more information, please contact [email protected]. Exploring the role of CESA5 in the synthesis of cellulose using Physcomitrella patens Abstract Cellulose is very essential to plants because it determines the shape of cells, protects them from pathogens, and helps retain water that is needed for plant functions. It is also the major component of wood, cotton, and paper, which are items we use on a daily basis. Also, it can be used for the synthesis of biofuels. However, cellulose exists as strong fibers, which make it hard to breakdown for biofuel synthesis. If we can understand how cellulose is synthesized we can manipulate its fibers to make them stronger, more flexible, more absorbent, or easier to break down for use as biofuels. Cellulose synthase complexes are observed by electron microscopy in the plasma membrane and Golgi vesicles of algae and plants. -
Distribution and Phylogenetic Significance of the 71-Kb Inversion
Annals of Botany 99: 747–753, 2007 doi:10.1093/aob/mcm010, available online at www.aob.oxfordjournals.org Distribution and Phylogenetic Significance of the 71-kb Inversion in the Plastid Genome in Funariidae (Bryophyta) BERNARD GOFFINET1,*, NORMAN J. WICKETT1 , OLAF WERNER2 , ROSA MARIA ROS2 , A. JONATHAN SHAW3 and CYMON J. COX3,† 1Department of Ecology and Evolutionary Biology, 75 North Eagleville Road, University of Connecticut, Storrs, CT 06269-3043, USA, 2Universidad de Murcia, Facultad de Biologı´a, Departamento de Biologı´a Vegetal, Campus de Espinardo, 30100-Murcia, Spain and 3Department of Biology, Duke University, Durham, NC 27708, USA Received: 31 October 2006 Revision requested: 21 November 2006 Accepted: 21 December 2006 Published electronically: 2 March 2007 † Background and Aims The recent assembly of the complete sequence of the plastid genome of the model taxon Physcomitrella patens (Funariaceae, Bryophyta) revealed that a 71-kb fragment, encompassing much of the large single copy region, is inverted. This inversion of 57% of the genome is the largest rearrangement detected in the plastid genomes of plants to date. Although initially considered diagnostic of Physcomitrella patens, the inversion was recently shown to characterize the plastid genome of two species from related genera within Funariaceae, but was lacking in another member of Funariidae. The phylogenetic significance of the inversion has remained ambiguous. † Methods Exemplars of all families included in Funariidae were surveyed. DNA sequences spanning the inversion break ends were amplified, using primers that anneal to genes on either side of the putative end points of the inver- sion. Primer combinations were designed to yield a product for either the inverted or the non-inverted architecture. -
Volume 1, Chapter 2-7: Bryophyta
Glime, J. M. 2017. Bryophyta – Bryopsida. Chapt. 2-7. In: Glime, J. M. Bryophyte Ecology. Volume 1. Physiological Ecology. Ebook 2-7-1 sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 10 January 2019 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 2-7 BRYOPHYTA – BRYOPSIDA TABLE OF CONTENTS Bryopsida Definition........................................................................................................................................... 2-7-2 Chromosome Numbers........................................................................................................................................ 2-7-3 Spore Production and Protonemata ..................................................................................................................... 2-7-3 Gametophyte Buds.............................................................................................................................................. 2-7-4 Gametophores ..................................................................................................................................................... 2-7-4 Location of Sex Organs....................................................................................................................................... 2-7-6 Sperm Dispersal .................................................................................................................................................. 2-7-7 Release of Sperm from the Antheridium..................................................................................................... -
Physcomitrium Patens Infection by Colletotrichum Gloeosporioides: Understanding the Fungal–Bryophyte Interaction by Microscopy, Phenomics and RNA Sequencing
Journal of Fungi Article Physcomitrium patens Infection by Colletotrichum gloeosporioides: Understanding the Fungal–Bryophyte Interaction by Microscopy, Phenomics and RNA Sequencing Adriana Otero-Blanca 1 , Yordanis Pérez-Llano 1 , Guillermo Reboledo-Blanco 2, Verónica Lira-Ruan 1 , Daniel Padilla-Chacon 3, Jorge Luis Folch-Mallol 4 , María del Rayo Sánchez-Carbente 4 , Inés Ponce De León 2 and Ramón Alberto Batista-García 1,* 1 Centro de Investigación en Dinámica Celular, Instituto de Investigación en Ciencias Básicas y Aplicadas, Universidad Autónoma del Estado de Morelos, Cuernavaca 62209, Mexico; [email protected] (A.O.-B.); [email protected] (Y.P.-L.); [email protected] (V.L.-R.) 2 Departamento de Biología Molecular, Instituto de Investigaciones Biológicas Clemente Estable, Montevideo 11600, Uruguay; [email protected] (G.R.-B.); [email protected] (I.P.D.L.) 3 Consejo Nacional de Ciencia y Tecnología (CONACyT), Colegio de Postgraduados de México, Campus Montecillo, Texcoco 56230, Mexico; [email protected] 4 Centro de Investigación en Biotecnología, Universidad Autónoma del Estado de Morelos, Cuernavaca 62209, Mexico; [email protected] (J.L.F.-M.); [email protected] (M.d.R.S.-C.) Citation: Otero-Blanca, A.; * Correspondence: [email protected] or [email protected]; Tel.: +52-777-3297020 Pérez-Llano, Y.; Reboledo-Blanco, G.; Lira-Ruan, V.; Padilla-Chacon, D.; Abstract: Anthracnose caused by the hemibiotroph fungus Colletotrichum gloeosporioides is a dev- Folch-Mallol, J.L.; Sánchez-Carbente, astating plant disease with an extensive impact on plant productivity. The process of colonization M.d.R.; Ponce De León, I.; and disease progression of C. -
Physcomitrium Schummii Sp. Nov. from Karnataka, India with a Synopsis of the Funariaceae in India
Physcomitrium schummii sp. nov. from Karnataka, India … 1 Physcomitrium schummii sp. nov. from Karnataka, India with a synopsis of the Funariaceae in India 1 UWE SCHWARZ 1 Uwe Schwarz, Hohenstaufenstrasse 9, 70794 Filderstadt, Germany, [email protected] Abstract: Schwarz, U. (2016): Physcomitrium schummii sp. nov. from Karnataka, India with a synopsis of the Funariaceae in India. Frahmia 13:1-19. During the exploration of the bryoflora of Karnataka, India one new species of Physcomitrium was discovered and described as new species. Furthermore a synopsis of the family in India, represented by 4 genera, including 13 species of Entosthodon, 7 species of Funaria, 1 species of Loiseaubryum and 12 species of Physcomitrium is given. Funaria excurrentinervis, F. sinuatolimbata, F. subimmarginata, and F. pulchra are transferred to the genus Entosthodon. 1. Introduction First records of Funariaceae data back to 1842 where GRIFFITH (1842) reported Funaria hygrometrica from Upper Assam. He also described Funaria leptopoda, Gymnostomum repandum (= Physcomitrium repandum), and Gymnostomum pulchellum (= Physcomitrium pulchellum) from the same area. Besides the common Funaria hygrometrica MONTAGNE (1842) described in the same year Funaria physcomitrioides (= Entosthodon pulchellum) and Physcomitrium perrottetii (= Entosthodon perrottetii) form the Nilgiri Mountains in Southern India. Three more species, Entosthodon diversinervis and Entosthodon submarginatus, were added by MÜLLER (1853) and finally Funaria connivens (= Funaria hygrometrica var. calvescens) by MÜLLER (1855) to the flora of this area. MITTEN (1859) summarized the knowledge of the bryophytes of the Indian subcontinent which included records of 19 species, of which Physcomitrium cyathicarpum (= Physcomitrium immersum), Entosthodon wallichii (= Entosthodon buseanus), Entosthodon pilifer (= Funaria wijkii), Entosthodon nutans (= Loiseaubryum nutans) and Funaria orthocarpa were described new to science. -
Liverworts, Mosses and Hornworts of Afghanistan - Our Present Knowledge
ISSN 2336-3193 Acta Mus. Siles. Sci. Natur., 68: 11-24, 2019 DOI: 10.2478/cszma-2019-0002 Published: online 1 July 2019, print July 2019 Liverworts, mosses and hornworts of Afghanistan - our present knowledge Harald Kürschner & Wolfgang Frey Liverworts, mosses and hornworts of Afghanistan ‒ our present knowledge. – Acta Mus. Siles. Sci. Natur., 68: 11-24, 2019. Abstract: A new bryophyte checklist for Afghanistan is presented, including all published records since the beginning of collection activities in 1839 ‒1840 by W. Griffith till present. Considering several unidentified collections in various herbaria, 23 new records for Afghanistan together with the collection data can be added to the flora. Beside a new genus, Asterella , the new records include Amblystegium serpens var. serpens, Brachythecium erythrorrhizon, Bryum dichotomum, B. elwendicum, B. pallens, B. weigelii, Dichodontium palustre, Didymodon luridus, D. tectorum, Distichium inclinatum, Entosthodon muhlenbergii, Hygroamblystegium fluviatile subsp. fluviatile, Oncophorus virens, Orthotrichum rupestre var. sturmii, Pogonatum urnigerum, Pseudocrossidium revolutum, Pterygoneurum ovatum, Schistidium rivulare, Syntrichia handelii, Tortella inflexa, T. tortuosa, and Tortula muralis subsp. obtusifolia . Therewith the number of species increase to 24 liverworts, 246 mosses and one hornwort. In addition, a historical overview of the country's exploration and a full biogeography of Afghan bryophytes is given. Key words: Bryophytes, checklist, flora, phytodiversity. Introduction Recording, documentation, identification and classification of organisms is a primary tool and essential step in plant sciences and ecology to obtain detailed knowledge on the flora of a country. In many countries, such as Afghanistan, however, our knowledge on plant diversity, function, interactions of species and number of species in ecosystems is very limited and far from being complete. -
Sites of Importance for Nature Conservation Wales Guidance (Pdf)
Wildlife Sites Guidance Wales A Guide to Develop Local Wildlife Systems in Wales Wildlife Sites Guidance Wales A Guide to Develop Local Wildlife Systems in Wales Foreword The Welsh Assembly Government’s Environment Strategy for Wales, published in May 2006, pays tribute to the intrinsic value of biodiversity – ‘the variety of life on earth’. The Strategy acknowledges the role biodiversity plays, not only in many natural processes, but also in the direct and indirect economic, social, aesthetic, cultural and spiritual benefits that we derive from it. The Strategy also acknowledges that pressures brought about by our own actions and by other factors, such as climate change, have resulted in damage to the biodiversity of Wales and calls for a halt to this loss and for the implementation of measures to bring about a recovery. Local Wildlife Sites provide essential support between and around our internationally and nationally designated nature sites and thus aid our efforts to build a more resilient network for nature in Wales. The Wildlife Sites Guidance derives from the shared knowledge and experience of people and organisations throughout Wales and beyond and provides a common point of reference for the most effective selection of Local Wildlife Sites. I am grateful to the Wales Biodiversity Partnership for developing the Wildlife Sites Guidance. The contribution and co-operation of organisations and individuals across Wales are vital to achieving our biodiversity targets. I hope that you will find the Wildlife Sites Guidance a useful tool in the battle against biodiversity loss and that you will ensure that it is used to its full potential in order to derive maximum benefit for the vitally important and valuable nature in Wales. -
Physcomitrium Patens: a Single Model to Study Oriented Cell Divisions in 1D to 3D Patterning
International Journal of Molecular Sciences Review Physcomitrium patens: A Single Model to Study Oriented Cell Divisions in 1D to 3D Patterning Jeroen de Keijzer 1,† , Alejandra Freire Rios 1,2,† and Viola Willemsen 2,* 1 Laboratory of Cell Biology, Department of Plant Sciences, Wageningen University & Research, 6708 PB Wageningen, The Netherlands; [email protected] (J.d.K.); [email protected] (A.F.R.) 2 Laboratory of Molecular Biology, Department of Plant Sciences, Wageningen University & Research, 6708 PB Wageningen, The Netherlands * Correspondence: [email protected] † These authors share the first authorship. Abstract: Development in multicellular organisms relies on cell proliferation and specialization. In plants, both these processes critically depend on the spatial organization of cells within a tis- sue. Owing to an absence of significant cellular migration, the relative position of plant cells is virtually made permanent at the moment of division. Therefore, in numerous plant developmental contexts, the (divergent) developmental trajectories of daughter cells are dependent on division plane positioning in the parental cell. Prior to and throughout division, specific cellular processes inform, establish and execute division plane control. For studying these facets of division plane control, the moss Physcomitrium (Physcomitrella) patens has emerged as a suitable model system. Developmental progression in this organism starts out simple and transitions towards a body plan with a three-dimensional structure. The transition is accompanied by a series of divisions where cell fate transitions and division plane positioning go hand in hand. These divisions are experimentally Citation: de Keijzer, J.; Freire Rios, highly tractable and accessible. In this review, we will highlight recently uncovered mechanisms, A.; Willemsen, V. -
Polyploidization Within the Funariaceae—A Key Principle Behind Speciation, Sporophyte Reduction and the High Variance of Spore Diameters?
Bry. Div. Evo. 043 (1): 164–179 ISSN 2381-9677 (print edition) DIVERSITY & https://www.mapress.com/j/bde BRYOPHYTEEVOLUTION Copyright © 2021 Magnolia Press Article ISSN 2381-9685 (online edition) https://doi.org/10.11646/bde.43.1.13 Polyploidization within the Funariaceae—a key principle behind speciation, sporophyte reduction and the high variance of spore diameters? ANNA K. OSTENDORF1,2,#, NICO VAN GESSEL2,#, YARON MALKOWSKY1,3, MARKO S. SABOVLJEVIC4, STEFAN A. RENSING5,6,7, ANITA ROTH-NEBELSICK1 & RALF RESKI2,7,8,* 1State Museum of Natural History, Rosenstein 1, 70191 Stuttgart, Germany �[email protected]; �[email protected]; https://orcid.org/0000-0002-9401-5128 2Plant Biotechnology, Faculty of Biology, University of Freiburg, Schaenzlestrasse 1, 79104 Freiburg, Germany �[email protected]; https://orcid.org/0000-0002-0606-246X 3Nees Institute for Biodiversity of Plants, University of Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany �[email protected]; 4Institute of Botany and Botanical Garden, Faculty of Biology, University of Belgrade, Takovska 43, 11000 Belgrade, Serbia �[email protected]; https://orcid.org/0000-0001-5809-0406 5Plant Cell Biology, Faculty of Biology, University of Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany �[email protected]; https://orcid.org/0000-0002-0225-873X 6SYNMIKRO Center for Synthetic Microbiology, University of Marburg, Karl-von-Frisch-Straße 16, 35043 Marburg, Germany 7Signalling Research Centres BIOSS and CIBSS, University