Mammalogy Lecture 2 - Origin of Mammals Introduction to the Geologic Time Scale
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Distributions of Extinction Times from Fossil Ages and Tree Topologies: the Example of Some Mid-Permian Synapsid Extinctions Gilles Didier, Michel Laurin
Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier, Michel Laurin To cite this version: Gilles Didier, Michel Laurin. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions. 2021. hal-03258099v2 HAL Id: hal-03258099 https://hal.archives-ouvertes.fr/hal-03258099v2 Preprint submitted on 20 Sep 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier1 and Michel Laurin2 1 IMAG, Univ Montpellier, CNRS, Montpellier, France 2 CR2P (\Centre de Pal´eontologie { Paris"; UMR 7207), CNRS/MNHN/SU, Mus´eumNational d'Histoire Naturelle, Paris, France September 16, 2021 Abstract Given a phylogenetic tree that includes only extinct, or a mix of extinct and extant taxa, where at least some fossil data are available, we present a method to compute the distribution of the extinction time of a given set of taxa under the Fossilized-Birth-Death model. Our approach differs from the previous ones in that it takes into account (i) the possibility that the taxa or the clade considered may diversify before going extinct and (ii) the whole phylogenetic tree to estimate extinction times, whilst previous methods do not consider the diversification process and deal with each branch independently. -
Filling the Olson's Gap? a Re-Appraisal of Raranimus Dashankouensis (Synapsida, Therapsida) Using CT Scanning Technologies
IMGRAD4 Abstract ID : 9 Filling the Olson’s Gap? A re-appraisal of Raranimus dashankouensis (Synapsida, Therapsida) using CT scanning technologies. Content Non-mammalian Therapsida is a paraphyletic group of Permian-Jurassic amniotes closely related tomam- mals. Understanding the origin of Therapsida is complicated by the existence of a phylogenetic gapinthe fossil record termed Olson’s gap. Because of its assumed low stratigraphic occurrence and basal phylogenetic position, Raranimus dashankouensis, from the Dashankou fauna, Qingtoushan Formation, China, is the best candidate to fill this gap. However, its phylogenetic position as the basal-most therapsid is the subjectof debate. In addition, the age of the Qingtoushan Formation is poorly constrained. Enhancement of CT scanning technology offers new ways to investigate the skull of extinct species andpro- vides access to characters which were previously out of reach (e.g. internal cranial features such as cranial nerves) which can be useful for phylogenetic analysis. Our results show that Raranimus has five therapsid synapomorphies, the most obvious being the short contact between the maxilla and the prefrontal. However the presence of plesiomorphic characters, such as the presence of a precanine caniniform tooth, manifest re- tention of typical “pelycosaur” grade features. The maxillary canal morphology of Raranimus is comparable to that of the “pelycosaur” Varanosaurus and the biarmosuchian Herpetoskylax. Overall, this suggests a very basal position for Raranimus in the therapsid phylogenetic tree. New data on the age of the Qingtoushan For- mation indicates a Roadian age for Rarianimus, hence filling the Olson’s gap and confirming that the genus is an important taxon for understanding the evolutionary origin of therapsids. -
A New Mid-Permian Burnetiamorph Therapsid from the Main Karoo Basin of South Africa and a Phylogenetic Review of Burnetiamorpha
Editors' choice A new mid-Permian burnetiamorph therapsid from the Main Karoo Basin of South Africa and a phylogenetic review of Burnetiamorpha MICHAEL O. DAY, BRUCE S. RUBIDGE, and FERNANDO ABDALA Day, M.O., Rubidge, B.S., and Abdala, F. 2016. A new mid-Permian burnetiamorph therapsid from the Main Karoo Basin of South Africa and a phylogenetic review of Burnetiamorpha. Acta Palaeontologica Polonica 61 (4): 701–719. Discoveries of burnetiamorph therapsids in the last decade and a half have increased their known diversity but they remain a minor constituent of middle–late Permian tetrapod faunas. In the Main Karoo Basin of South Africa, from where the clade is traditionally best known, specimens have been reported from all of the Permian biozones except the Eodicynodon and Pristerognathus assemblage zones. Although the addition of new taxa has provided more evidence for burnetiamorph synapomorphies, phylogenetic hypotheses for the clade remain incongruent with their appearances in the stratigraphic column. Here we describe a new burnetiamorph specimen (BP/1/7098) from the Pristerognathus Assemblage Zone and review the phylogeny of the Burnetiamorpha through a comprehensive comparison of known material. Phylogenetic analysis suggests that BP/1/7098 is closely related to the Russian species Niuksenitia sukhonensis. Remarkably, the supposed mid-Permian burnetiids Bullacephalus and Pachydectes are not recovered as burnetiids and in most cases are not burnetiamorphs at all, instead representing an earlier-diverging clade of biarmosuchians that are characterised by their large size, dentigerous transverse process of the pterygoid and exclusion of the jugal from the lat- eral temporal fenestra. The evolution of pachyostosis therefore appears to have occurred independently in these genera. -
The Mammary Gland and Its Origin During Synapsid Evolution
P1: GMX Journal of Mammary Gland Biology and Neoplasia (JMGBN) pp749-jmgbn-460568 January 9, 2003 17:51 Style file version Nov. 07, 2000 Journal of Mammary Gland Biology and Neoplasia, Vol. 7, No. 3, July 2002 (C 2002) The Mammary Gland and Its Origin During Synapsid Evolution Olav T. Oftedal1 Lactation appears to be an ancient reproductive trait that predates the origin of mammals. The synapsid branch of the amniote tree that separated from other taxa in the Pennsylva- nian (>310 million years ago) evolved a glandular rather than scaled integument. Repeated radiations of synapsids produced a gradual accrual of mammalian features. The mammary gland apparently derives from an ancestral apocrine-like gland that was associated with hair follicles. This association is retained by monotreme mammary glands and is evident as ves- tigial mammary hair during early ontogenetic development of marsupials. The dense cluster of mammo-pilo-sebaceous units that open onto a nipple-less mammary patch in monotremes may reflect a structure that evolved to provide moisture and other constituents to permeable eggs. Mammary patch secretions were coopted to provide nutrients to hatchlings, but some constituents including lactose may have been secreted by ancestral apocrine-like glands in early synapsids. Advanced Triassic therapsids, such as cynodonts, almost certainly secreted complex, nutrient-rich milk, allowing a progressive decline in egg size and an increasingly altricial state of the young at hatching. This is indicated by the very small body size, presence of epipubic bones, and limited tooth replacement in advanced cynodonts and early mammali- aforms. Nipples that arose from the mammary patch rendered mammary hairs obsolete, while placental structures have allowed lactation to be truncated in living eutherians. -
Reptiles A. Cladistics 1. Many Groups of Organisms
Reptiles A. Cladistics 1. Many groups of organisms are “polyphyletic” a. This means that the group combines 2 or more lineages - example=fish 2. Cladistics follows only pure lineages going back in time - example Osteichthys B. Reptile Classifiecation - looks like a polyphyletic group 1. Dry skin - no loss of water through skin like amphibians 2. Aminotic egg - an egg that can survive on dry land - in contrast with the amphibian egg C. Mammals and Birds are derived from different lineages of reptiles (We will see below) D. Stem Reptiles 1. Different lineages based on the temporal region of their skulls - number of holes (or bars) a. These holes are necessary to accommodate large jaw muscles b. Anapsid Skull - no holes in temporal - jaws can move fast, but with little force 1. Muscles that move the jaw are small 2. There is no good paleotological evidence for the transition between amphibians and reptiles - no fossil intermediates a. Fossil amphibians have lots of dermal bones in skull b. Amphibians have no temporal openings in skull 1. (Aside) both fossil amphibians and primitive reptiles have a parietal “eye” that senses light and dark (“third” eye in middle of head) c. Reptile skull is higher than amphibian to accomodate larger jaw muscles d. Of the modern reptiles only turtles are anapsids 2. Diapsid Skull - has holes in the temporal region a. Diapsid reptiles gave rise to lizards and snakes - they have a diapsid skull 1. Also Tuatara, crocodiles, dinosaurs and pterydactyls Reptiles b. One group of diapsids also had a pre-orbital hole in the skull in front of eye - this hole is still preserved in the birds - this anatomy suggests strongly that the birds are derived from the diapsid reptiles 3. -
2018 NMGS Spring Meeting: Abstract-748
FIRST DISCOVERY OF A TETRAPOD BODY FOSSIL IN THE LOWER PERMIAN YESO GROUP, CENTRAL NEW MEXICO Emily D. Thorpe1, Spencer G. Lucas2, David S. Berman3, Larry F. Rinehart2, Vincent Santucci4 and Amy C. Henrici3 1 POBox 147, Morrisonville, WI, 53571, [email protected] 2New Mexico Museum of Natural History and Science, 1801 Mountain Road N. W., Albuquerque, NM, 87104 3Carnegie Museum of Natural History, 4400 Forbes Ave, Pittsburgh, PA, 15213 4National Parks Service, 1849 C Street, NW, Washington, DC, 20240, United States The lower Permian Yeso Group records arid coastal plain, shallow marine, and evaporitic deposition across much of central New Mexico. Generally considered to have few fossils, recent study of Yeso Group strata has discovered a diverse fossil record of marine micro-organisms (mostly algae and foraminiferans), terrestrial plants, and tetrapod footprints. We report here the first discovery of a tetrapod body fossil in the Yeso Group—a partial skeleton of a basal synapsid, varanopidae eupelycosaur. The fossil is the natural casts of bones in two pieces, part and counterpart, that were preserved in a sandstone bed of the lower part of the Arroyo de Alamillo Formation in the southern Manzano Mountains. The fossil-bearing sandstone is fine-grained, quartz rich, and pale reddish brown to grayish red unweathered, weathers to blackish red, and is in part encrusted by white caliche. The casts preserve part of the pelvis(?), 18 caudal vertebral centra, both femora and tibia-fibulae, and most of the pedes, largely in close articulation, of a single individual. The skeleton is of a relatively small (femur length = 62 mm, total length of the preserved cast from the pelvis to tip of the incomplete tail = 325 mm) and gracile eupelycosaur most similar to Varanops. -
Morphology, Phylogeny, and Evolution of Diadectidae (Cotylosauria: Diadectomorpha)
Morphology, Phylogeny, and Evolution of Diadectidae (Cotylosauria: Diadectomorpha) by Richard Kissel A thesis submitted in conformity with the requirements for the degree of doctor of philosophy Graduate Department of Ecology & Evolutionary Biology University of Toronto © Copyright by Richard Kissel 2010 Morphology, Phylogeny, and Evolution of Diadectidae (Cotylosauria: Diadectomorpha) Richard Kissel Doctor of Philosophy Graduate Department of Ecology & Evolutionary Biology University of Toronto 2010 Abstract Based on dental, cranial, and postcranial anatomy, members of the Permo-Carboniferous clade Diadectidae are generally regarded as the earliest tetrapods capable of processing high-fiber plant material; presented here is a review of diadectid morphology, phylogeny, taxonomy, and paleozoogeography. Phylogenetic analyses support the monophyly of Diadectidae within Diadectomorpha, the sister-group to Amniota, with Limnoscelis as the sister-taxon to Tseajaia + Diadectidae. Analysis of diadectid interrelationships of all known taxa for which adequate specimens and information are known—the first of its kind conducted—positions Ambedus pusillus as the sister-taxon to all other forms, with Diadectes sanmiguelensis, Orobates pabsti, Desmatodon hesperis, Diadectes absitus, and (Diadectes sideropelicus + Diadectes tenuitectes + Diasparactus zenos) representing progressively more derived taxa in a series of nested clades. In light of these results, it is recommended herein that the species Diadectes sanmiguelensis be referred to the new genus -
Mammalian Origins Major Groups of Synapsida
Mammalogy 4764 9/16/2009 Chapter 4 “Reptile” Mammalian Origins Early mammal Carnivore Amniota Herbivore Feldhamer Table 4.1 Savage and Long 1986 Major Fig. 3.2, Vaughn, Fig. 4.1, Feldhamer groups Mammalian Origins of Dimetrodon Overview Synapsida Synapsids Pelycosaurs and Therapsids First Mammals Mesozoic Era appear Feldhamer Fig. 4.2 Cenozoic Era radiate Savage and Long 1986 Pelycosaur Skull, jaw musculature, and teeth Cynodontia -- Advanced, predaceous therapsids Pelycosaur Scymnognathus Cynognathus Therapsid Early Cynodont Derived Therapsid/Mammal Primitive Late Cynodont Fig. 3.2, Vaughn Thrinaxodon Fig 4.3 & 4, Feldhamer 1 Mammalogy 4764 9/16/2009 Skeletal transition Extinction of Cynodonts Possibly competition from dinosaurs Pelycosaur Early Cynodonts were dog-size, last surviving were squirrel sized Fig. 4.15 Mammals that survived while Cynodonts went extinct (contemporary) were mouse-sized. Cynodont Thrinaxodon Modern Mammal Fig. 3.5, Vaughn Fig. 4.16c, Early Cynodont Early mammals Changes in land masses Feldhamer 4.11 200 - 250 million years ago Derived characters: Dentary/squamosal jaw articulation Diphyodont dentition 200 MYA 180 MYA Mammary glands Secondary palate Early Mid- Viviparity (loss of eggshell) When? Jurassic Jurassic 65 MYA 135 MYA Early Early Cretaceous Cenozoic Feldhamer 4.5, 4.9 Skull and teeth of mammals 2 Mammalogy 4764 9/16/2009 Teeth and Dentition of Mammals Teeth Heterodont teeth with different functions Differentiated on the basis of function, resulting in increased One of the major keys efficiency acquiring and digesting food. to success of mammals Teeth occur in 3 bones of skull: Teeth of mammals are premaxilla, maxilla, dentary extremely variable with different diets -- more than other taxa Feldhamer et al. -
The Ear in Mammal-Like Reptiles and Early Mammals
Acta Palaeontologica Polonica Vol. 28, No. 1-2 pp, 147-158 Warszawa, 1983 Second Symposium on Mesozoic T erre stial Ecosystems, Jadwisin 1981 KENNETH A. KERMACK and FRANCES MUSSETT THE EAR IN MAMMAL-LIKE REPTILES AND EARLY MAMMALS KERMACK, K . A. a nd MUSS ETT, F.: The ear in mammal-like r eptiles an d early mammals. Acta Palaeont. P olonica , 28, 1-2, 147-158, 1983. Th e early m embers of the Theropsida lacked a tympanic membrane. In the later theropslds, the Therapsid a, a tym p an ic membrane develop ed from thc skin on the lateral side of th e lower jaw. The tympanum is not homologous In the Therapsida and ' t he Sauropslda. The ther apsid ea r w as a poor receiver of airborne sound, both In hi gh frequency r esp onse and In the r ange of frequencies encompassed. With the radiation of the Sauropsida in the Triassic the large therapsids became extinct, the small therap si ds evolv ed In to the mammal s and became nocturnal. High frequency hearin g w as essen tial for the nocturn al mode of life; quadrate and arttcutar became diss ociated from the jaw hinge to become the m ammali an au di tory ossi cles . I n the Theria the cochlea became coil ed. The spiral cochlea could n ot have existed until there w as a middle ear w ith the n ec essary h ig h f re q uency r esp onse. This m ay n ot have been until the Cretace ous. -
The Intramandibular Joint in Girella: a Mechanism for Increased Force Production?
JOURNAL OF MORPHOLOGY 271:271–279 (2010) The Intramandibular Joint in Girella: A Mechanism for Increased Force Production? Lara A. Ferry-Graham1,3* and Nicolai Konow2 1California State University, Moss Landing Marine Labs, Moss Landing, California 95039 2Brown University, Ecology and Evolutionary Biology, Providence, Box G-B204, Rhode Island 02912 3CEAZA, Centro de Estudios Avanzados de Zonas Aridas (Center for Advanced Studies in Arid Zones), Universidad Cato´lica del Norte. Box 599, Benavente 980, La Serena, Chile ABSTRACT Intramandibular joints (IMJ) are novel Bellwood, 2002). This is likely due to the forces articulations between bony elements of the lower jaw required for obtaining food items many of which are that have evolved independently in multiple fish line- either tough or firmly attached to the substrate ages and are typically associated with biting herbivory. (Alfaro et al., 2001). In several reef fish lineages, This novel joint is hypothesized to function by augment- aspects of the feeding apparatus have been radically ing oral jaw expansion during mouth opening, which would increase contact between the tooth-bearing area altered for force production, either via hypertro- of the jaws and algal substratum during feeding, result- phied or via structurally altered musculature (Friel ing in more effective food removal from the substrate. and Wainwright, 1997), modified muscle attach- Currently, it is not understood if increased flexibility in ments (Vial and Ojeda, 1990; Konow and Bellwood, a double-jointed mandible also results in increased force 2005), or increased suturing and/or reinforcement generation during herbivorous biting and/or scraping. of bony elements and dentition (Tedman, 1980; Therefore, we selected the herbivore Girella laevifrons Streelman et al., 2002; Bellwood et al., 2003). -
Dashankou Fauna: a Unique Window on the Early Evolution of Therapsids
Vol.24 No.2 2010 Paleoherpetology Dashankou Fauna: A Unique Window on the Early Evolution of Therapsids LIU Jun* Institute of Vertebrate Paleontology and Paleoanthropology, CAS, Beijing 100044, China n the 1980s, the Institute of Geology, Chinese Academy of IGeological Sciences (IGCAGS) sent an expedition to the area north of the Qilian Mountains to study the local terrestrial Permian and Triassic deposits. A new vertebrate fossil locality, later named Dashankou Fauna, was discovered by Prof. CHENG Zhengwu in Dashankou, Yumen, Gansu Province in 1981. Small-scale excavations in 1981, 1982 and 1985 demonstrated that this locality was a source of abundant and diverse vertebrate fossils. In the 1990s, supported by the National Natural Science Foundation of China, the Fig. 1 Prof. LI Jinling in the excavation of 1995. She first summarized the known IGCAGS, the Institute of Vertebrate members of the Dashankou Fauna and brought it to light as the most primitive and abundant Chinese tetrapod fauna. Paleontology and Paleoanthropology (IVPP) under CAS, and the Geological Museum of China formed a joint team IVPP were productive and have since investigations were first disseminated to work on this fauna. Three large- unveiled an interesting episode in the to the public in 1995. In 2001, Prof. scale excavations, undertaken in transition from reptiles to mammals in LI Jinling summarized the known 1991, 1992, and 1995 respectively, as evolutionary history. members of the fauna and discussed well as the subsequent ones held by The results from these their features. She pointed out that * To whom correspondence should be addressed at [email protected]. -
The Skull O Neurocranium, Form and Function O Dermatocranium, Form
Lesson 15 ◊ Lesson Outline: ♦ The Skull o Neurocranium, Form and Function o Dermatocranium, Form and Function o Splanchnocranium, Form and Function • Evolution and Design of Jaws • Fate of the Splanchnocranium ♦ Trends ◊ Objectives: At the end of this lesson, you should be able to: ♦ Describe the structure and function of the neurocranium ♦ Describe the structure and function of the dermatocranium ♦ Describe the origin of the splanchnocranium and discuss the various structures that have evolved from it. ♦ Describe the structure and function of the various structures that have been derived from the splanchnocranium ♦ Discuss various types of jaw suspension and the significance of the differences in each type ◊ References: ♦ Chapter: 9: 162-198 ◊ Reading for Next Lesson: ♦ Chapter: 9: 162-198 The Skull: From an anatomical perspective, the skull is composed of three parts based on the origins of the various components that make up the final product. These are the: Neurocranium (Chondocranium) Dermatocranium Splanchnocranium Each part is distinguished by its ontogenetic and phylogenetic origins although all three work together to produce the skull. The first two are considered part of the Cranial Skeleton. The latter is considered as a separate Visceral Skeleton in our textbook. Many other morphologists include the visceral skeleton as part of the cranial skeleton. This is a complex group of elements that are derived from the ancestral skeleton of the branchial arches and that ultimately gives rise to the jaws and the skeleton of the gill