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Benthic Invertebrate Community Monitoring and Indicator Development for Barnegat Bay-Little Egg Harbor Estuary
July 15, 2013 Final Report Project SR12-002: Benthic Invertebrate Community Monitoring and Indicator Development for Barnegat Bay-Little Egg Harbor Estuary Gary L. Taghon, Rutgers University, Project Manager [email protected] Judith P. Grassle, Rutgers University, Co-Manager [email protected] Charlotte M. Fuller, Rutgers University, Co-Manager [email protected] Rosemarie F. Petrecca, Rutgers University, Co-Manager and Quality Assurance Officer [email protected] Patricia Ramey, Senckenberg Research Institute and Natural History Museum, Frankfurt Germany, Co-Manager [email protected] Thomas Belton, NJDEP Project Manager and NJDEP Research Coordinator [email protected] Marc Ferko, NJDEP Quality Assurance Officer [email protected] Bob Schuster, NJDEP Bureau of Marine Water Monitoring [email protected] Introduction The Barnegat Bay ecosystem is potentially under stress from human impacts, which have increased over the past several decades. Benthic macroinvertebrates are commonly included in studies to monitor the effects of human and natural stresses on marine and estuarine ecosystems. There are several reasons for this. Macroinvertebrates (here defined as animals retained on a 0.5-mm mesh sieve) are abundant in most coastal and estuarine sediments, typically on the order of 103 to 104 per meter squared. Benthic communities are typically composed of many taxa from different phyla, and quantitative measures of community diversity (e.g., Rosenberg et al. 2004) and the relative abundance of animals with different feeding behaviors (e.g., Weisberg et al. 1997, Pelletier et al. 2010), can be used to evaluate ecosystem health. Because most benthic invertebrates are sedentary as adults, they function as integrators, over periods of months to years, of the properties of their environment. -
PHORONIDA from EUROPA
PHORONIDA from EUROPA This publication should be cited as : Emig C. C., Roldán C. & J. M. Viéitez, 1999, 2006. The Phoronida from the European coasts. http://paleopolis.rediris.es/Phoronida/. The Phoronida from the European coasts Christian C. EMIG 1, Carmen ROLDÁN 2 y José M. VIÉITEZ 3 1 Centre d'Océanologie, CNRS UMR 6540, Rue de la Batterie-des-Lions, 13007 Marseille (France) 2 Depto. de Biología Animal I, Facultad de Biología, Universidad Complutense, 28040 Madrid (Spain) 3 Depto. de Biología Animal, Facultad de Ciencias, Universidad de Alcalá, 28871 Alcalá de Henares (Spain) From data of recent ecological surveys on the European biodiversity (in the EU and adjacent waters), mainly in the south of the Iberian Peninsula, the Chafarinas Islands and Canary Islands, the number of phoronid species occuring in the European waters increased to 9: Lophophorata Phoronida Species NE Atlantic Ocean ** Mediterranean Sea Phoronis ovalis + + Phoronis hippocrepia + + Phoronis australis + + Phoronis ijimai Phoronis muelleri + + Phoronis psammophila + + Phoronis pallida + + Phoronopsis albomaculata + + Phoronopsis harmeri + + Phoronopsis californica + + ** including adjacent seas; i.e. Channel, North, Baltic... Thus, the Iberian Peninsula and the surrounding islands represent a privileged area as regards the phoronids because from the 10 valid described phoronid species, only Phoronis ijimai has not been recorded (species presently restricted to the Pacific and NW Atlantic), while P. ovalis has been cited on the French Mediterranean coast near the Spanish border. PHORONIDA from EUROPA Recent references Emig C. C., García Carrascosa A. M., Roldán C. & J. M. Viétiez, 1999. The occurrence in the Chafarinas Islands (S.E. Alboran Sea, western Mediterranean) of four species of Phoronida (Lophophorata) and their distribution in the north-eastern Atlantic and Mediterranean areas. -
Kelp Forest Monitoring Handbook — Volume 1: Sampling Protocol
KELP FOREST MONITORING HANDBOOK VOLUME 1: SAMPLING PROTOCOL CHANNEL ISLANDS NATIONAL PARK KELP FOREST MONITORING HANDBOOK VOLUME 1: SAMPLING PROTOCOL Channel Islands National Park Gary E. Davis David J. Kushner Jennifer M. Mondragon Jeff E. Mondragon Derek Lerma Daniel V. Richards National Park Service Channel Islands National Park 1901 Spinnaker Drive Ventura, California 93001 November 1997 TABLE OF CONTENTS INTRODUCTION .....................................................................................................1 MONITORING DESIGN CONSIDERATIONS ......................................................... Species Selection ...........................................................................................2 Site Selection .................................................................................................3 Sampling Technique Selection .......................................................................3 SAMPLING METHOD PROTOCOL......................................................................... General Information .......................................................................................8 1 m Quadrats ..................................................................................................9 5 m Quadrats ..................................................................................................11 Band Transects ...............................................................................................13 Random Point Contacts ..................................................................................15 -
Phoronida (Phoronids)
■ Phoronida (Phoronids) Phylum Phoronida Number of families 1 Thumbnail description Sedentary, infaunal, benthic suspension-feeders with a vermiform (worm-like) body that bears a lophophore and is enclosed in a slender tube in which the animal moves freely and is anchored by an ampulla. Photo: A golden phoronid (Phoronopsis califor- nica) in Madeira (São Pedro, southeast coast, about 100 ft [30 m] depth) showing the helicoidal shape of the lophophore. (Photo by Peter Wirtz. Reproduced by permission.) Evolution and systematics its own coelom. A lophophore, defined as a tentacular extension The phylum Phoronida is known to have existed since the of the mesosome (and of its coelomic cavity, the mesocoelom) Devonian, but there is a poor fossil record of burrows and embraces the mouth but not the anus. The main functions of borings attributed to phoronids. Many scientists now regard the lophophore are feeding, respiration, and protection. The the Phoronida as a class within the phylum Lophophorata, site and shape of the lophophore are proportional to body size, along with the Brachiopoda and perhaps the Bryozoa. Phor- ranging from oval to horseshoe to helicoidal in relation to an onida consists of two genera, Phoronis and Phoronopsis, which increase in the number of tentacles. Phoronids have a U-shaped are characterized by the presence of an epidermal collar fold digestive tract. A nervous center is present between the mouth at the base of the lophophore. The group takes its name from and anus, as is a ring nerve at the base of the lophophore, and the genus name Phoronis, one of the numerous epithets of the the animal has one or two giant nerve fibers. -
A New Species of Horseshoe Worm Discovered in Japan After a 62 Year Gap 4 April 2014
A new species of horseshoe worm discovered in Japan after a 62 year gap 4 April 2014 Phoronis vancouverensis that has long been disputed. This is Phoronis emigi, preserved in formalin. Credit: Dr. Masato Hirose The horseshoe worm is a worm-like marine invertebrate inhabiting both hard and soft substrates such as rock, bivalve shells, and sandy bottom. The name "horseshoe" refers to the U- shaped crown of tentacles which is called "lophophore." Horseshoe worms comprise a small This is a living Phoronis ijimai, extending its lophophore. phylum Phoronida, which contains only ten species Credit: Dr. Masato Hirose. decorating the bottom of the oceans. The new species Phoronis emigi, the eleventh member of the group described in the open access "It is necessary to use both internal anatomy and journal ZooKeys, comes after a long 62 year gap molecular data for reveal the global diversity of of new discoveries in the phylum. It is unique in the horseshoe worm. The known phoronid diversity still number and arrangement of body-wall muscle remains low, with all specimens reported from bundles and the position of the nephridia which is limited habitats and the localities by the limited the excretory organ of some invertebrates. The reports. Investigations at new localities or habitats new species is morphologically similar to sand- may yield additional species in the future", explains dwelling species Phoronis psammophila and it is Dr Masato Hirose, Atmosphere and Ocean also closely related to Phoronis hippocrepia, which Research Institute, The University of Tokyo, Japan. inhabits hard substrate. The morphology of the topotypes for Phoronis More information: Hirose M, Fukiage R, Katoh T, ijimai is also described in this study after 117 years Kajihara H (2014) Description and molecular since its original description. -
Documenting Neotropical Diversity of Phoronids with DNA Barcoding of Planktonic Larvae
Received: 30 April 2018 | Revised: 25 January 2019 | Accepted: 17 February 2019 DOI: 10.1111/ivb.12242 ORIGINAL ARTICLE Documenting neotropical diversity of phoronids with DNA barcoding of planktonic larvae Rachel Collin1 | Dagoberto E. Venera‐Pontón1 | Amy C. Driskell2 | Kenneth S. Macdonald2 | Kit‐Yu Karen Chan3 | Michael J. Boyle4 1Smithsonian Tropical Research Institute, Balboa, Ancon, Panama Abstract 2Laboratories of Analytical Biology, National Phoronid larvae, actinotrochs, are beautiful and complicated organisms which have Museum of Natural History, Smithsonian attracted as much, if not more, attention than their adult forms. We collected acti‐ Institution, Washington, DC 3Division of Life Science, The Hong Kong notrochs from the waters of the Pacific and Caribbean coasts of Panama, and used University of Science and Technology, Clear DNA barcoding of mtCOI, as well as 16S and 18S sequences, to estimate the diversity Water Bay, Hong Kong of phoronids in the region. We discovered three operational taxonomic units (OTUs) 4Smithsonian Marine Station, Fort Pierce, Florida in the Bay of Panama on the Pacific coast and four OTUs in Bocas del Toro on the Caribbean coast. Not only did all OTUs differ from each other by >10% pairwise dis‐ Correspondence Rachel Collin, Smithsonian Tropical tance in COI, but they also differed from all phoronid sequences in GenBank, includ‐ Research, Institute, Unit 9100, Box 0948, ing the four species for which adults have been reported for the Pacific of Panama, DPO AA 34002, USA Email: [email protected] Phoronopsis harmeri, Phoronis psammophila, Phoronis muelleri, and Phoronis hippocre‐ pia. In each ocean region, one common OTU was more abundant and occurred more Present Address Kit‐Yu Karen Chan, Biology frequently than other OTUs in our samples. -
WEST COAST SPECIES of the PHYLUM PHORONIDA The
WEST COAST SPECIES OF THE PHYLUM PHORONIDA The following seven species of phoronid adults are known from southern and central California: Phoronis architecta Phoronopsis californica % Phoronis muelleri - 3G-5CV Phoronopsis harmeri Phoronis pallida ^Phoronis psammophila Phoronis vancouverensis With the exception of Phoronis muelleri the larvae of the above are also well known here. An additional nearly cosmopolitan species Phoronis ovalis occurs in Washington and two additional widely distributed species Phoronis australis and Phoronis hippocrepia are reported from our east coast. Two further "larval species" occur in southern California, a third such form is known from Hawaii, and there may be at least two additional unidentified larvae from east coast waters. There are no described adults to match with these larval forms, so additional adult forms await discovery and description. Two additional species names may be familiar to California workers: Phoronopsis viridis is now considered a synonym of Phoronopsis harmeri and Phoronis pacifica has never been identified since the inadequate type description The Genus Phoronis Members of this genus lack the epidermal fold known as the collar which is located at the base of the lophophore in members of the only other genus Phoronopsis. Although inconsequential and sometimes inconspicuous, the collar is the only morphological feature separating the genera. Adults of the genus Phoronis are usually smaller than those of Phoronopsis Phoronis ovalis: Not yet described from southern California, but probably here. Positive identification is easy since species is diminutive (usually less than 1 cm in length), with only about 24 tentacles which are arranged in a slightly indented circle. Burrows within calcareous substrates (limestone, mollusc shells, barnacles) in which it forms aggregations by asexual budding. -
Costa-Paiva Et Al. 2017)
GBE Broad Phylogenetic Occurrence of the Oxygen-Binding Hemerythrins in Bilaterians Elisa M. Costa-Paiva1,2,*, Carlos G. Schrago1,andKennethM.Halanych2 1Laboratorio de Biologia Evolutiva Teorica e Aplicada, Departamento de Gene´ tica, Universidade Federal do Rio de Janeiro, Brazil 2Molette Biology Laboratory for Environmental and Climate Change Studies, Department of Biological Sciences, Auburn University *Corresponding author: E-mail: [email protected]. Accepted: September 5, 2017 Data deposition: This project has been deposited at GenBank under accession numbers KY929214 to KY929271. Abstract Animal tissues need to be properly oxygenated for carrying out catabolic respiration and, as such, natural selection has presumably favored special molecules that can reversibly bind and transport oxygen. Hemoglobins, hemocyanins, and hemerythrins (Hrs) fulfill this role, with Hrs being the least studied. Knowledge of oxygen-binding proteins is crucial for understanding animal physiology. Hr genes are present in the three domains of life, Archaea, Bacteria, and Eukaryota; however, within Animalia, Hrs has been reported only in marine species in six phyla (Annelida, Brachiopoda, Priapulida, Bryozoa, Cnidaria, and Arthropoda). Given this observed Hr distribution, whether all metazoan Hrs share a common origin is circumspect. We investigated Hr diversity and evolution in metazoans, by employing in silico approaches to survey for Hrs from of 120 metazoan transcriptomes and genomes. We found 58 candidate Hr genes actively transcribed in 36 species distributed in 11 animal phyla, with new records in Echinodermata, Hemichordata, Mollusca, Nemertea, Phoronida, and Platyhelminthes. Moreover, we found that “Hrs” reported from Cnidaria and Arthropoda were not consistent with that of other metazoan Hrs. Contrary to previous suggestions that Hr genes were absent in deuterostomes, we find Hr genes present in deuterostomes and were likely present in early bilaterians, but not in nonbilaterian animal lineages. -
Description and Molecular Phylogeny of a New Species of Phoronis (Phoronida) from Japan, with a Redescription of Topotypes of P
A peer-reviewed open-access journal ZooKeysDescription 398: 1–31 (2014) and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan... 1 doi: 10.3897/zookeys.398.5176 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897 Masato Hirose1,†, Ryuma Fukiage2,‡, Toru Katoh3,§, Hiroshi Kajihara3,| 1 Coastal Ecosystem Restoration, International Coastal Research Center, Atmosphere and Ocean Research Insti- tute, The University of Tokyo, Kashiwa 277-8564, Chiba, Japan 2 Laboratory of Dead Body Science, Graduate School of Science, The University of Tokyo, Bunkyo-ku 113-0033, Tokyo, Japan3 Department of Natural History Sciences, Faculty of Science, Hokkaido University, Sapporo 060-0810, Hokkaido, Japan † http://zoobank.org/C6C49C49-B4DF-46B9-97D7-79DE2C942214 ‡ http://zoobank.org/D8FCA45C-E600-41FE-B4ED-0DB3EE96482D § http://zoobank.org/F0A8DBFC-D063-455A-B06D-7B4205283F34 | http://zoobank.org/D43FC916-850B-4F35-A78C-C2116447C606 Corresponding author: Masato Hirose ([email protected]) Academic editor: L. Penev | Received 20 March 2013 | Accepted 12 February 2014 | Published 4 April 2014 http://zoobank.org/CD2EA20A-65FB-4A75-A401-4569A4EAB630 Citation: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1–31. doi: 10.3897/zookeys.398.5176 Abstract We describe Phoronis emigi sp. n. as the eighth member of the genus based on specimens collected from a sandy bottom at 33.2 m depth in Tomioka Bay, Amakusa, Japan. -
Occurrence of Phoronopsis Californica and Phoronis Australis at Granada Coast (Spain, Western Mediterranean)
Cah. Biol. Mar. (1997) 38 : 273-276 Occurrence of Phoronopsis californica and Phoronis australis at Granada Coast (Spain, Western Mediterranean). Luis SÁNCHEZ TOCINO 1, Amelia OCAÑA 1 and José M. VIÉITEZ 2 1. - Depto.de Biología Animal y Ecología, Facultad de Ciencias, 18071 Granada (Spain) 2. - Depto. de Biología Animal, Universidad de Alcalá, 28871 Alcalá de Henares (Spain) Fax: 34 1 8855080 - E-mail: josem.vieitez @ alcala.es Adresse postale: José M. Viéitez. Depto. de Biología Animal. Universidad de Alcalá. 28871 Alcalá de Henares (Madrid, Spain). Abstract: Phoronopsis californica was collected at the beach of Calabajío (Almuñécar, Granada) at 9 m depth in a Cymodocea nodosa meadow with a muddy sand sediment; this represents the first record of this species for the Mediterranean Sea. At others localities of the same Granada province, but at a greater depth, around 15 m, Phoronis australis has been found, into a tube-wall of Cerianthus membranaceus which is typical for this phoronid species. The new record from Granada coast, enlarges the distribution area of Phoronida in the Mediterranean Sea, particularly that of the genus Phoronopsis. Résumé : Phoronopsis californica a été récoltée, pour la première fois en Mer Méditerranée, près de la plage de Calabajío (Almuñécar, Province de Grenade) à une profondeur de 9 m dans un sable fin, légèrement vaseux d'une prairie à Cymodocea nodosa. Dans une autre localité de la même province, à une profondeur de 15 m, Phoronis australis a été rencontrée, dans la paroi de tubes de Cerianthus membranaceus, une situation caractéristique de cette espèce de phoronidien. Ces nouvelles signalisations des environs de Grenade élargissent la distribution géographique des phoronidiens, en particulier celle du genre Phoronopsis. -
Results of Biological Sampling Conducted for Impact Analysis for Long-Range Maintenance Dredging in the Norfolk Naval Complex
W&M ScholarWorks Reports 1975 Results of Biological Sampling Conducted fResults of Biological Sampling Conducted for Impact Analysis for Long-Range maintenance dredging in the Norfolk Naval Complex Dmitry F. Boesch Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/reports Part of the Marine Biology Commons Recommended Citation Boesch, D. F. (1975) Results of Biological Sampling Conducted fResults of Biological Sampling Conducted for Impact Analysis for Long-Range maintenance dredging in the Norfolk Naval Complex. Virginia Institute of Marine Science, William & Mary. https://scholarworks.wm.edu/reports/2461 This Report is brought to you for free and open access by W&M ScholarWorks. It has been accepted for inclusion in Reports by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. ,.? -- .. ---.......... ' u l~fi.M?v ·\ A.M.. t,:A ... ~ I Ol ['IC' GlH i 'l'rRC1!"A INSl ITL'TI: l 105 , .:,f 'IS \..Uriit;,E SC1f'-'CE ~~'i -·,. (9=,--~ Results of Biological Sampling Conducted for Impact Analysis for Long-Range Maintenance Dredging in the Norfolk Naval Complex Subcontract No. Al0392 under Navy Contract No. N62470-74-C-1619 Subcontractors Report to Arthur D. Little, Inc. Cambridge, Mass. from Virginia Institute of Marine Science Gloucester Point, Virginia 23062 by Donald F. Boesch Associate Marine Scientist ! ,. ,..• January 1975 Part I. Trawl Samples Methods Seven stations were sampled once on 24 or 25 September and once between 13 November and 5 December, 1974 using a 16 foot se~i-balloon otter trawl-with a 3/8 inch stretch mesh cod inner liner. -
Induction and Regulation of Metamorphosis in Planktonic Larvae: <Emphasis Type="Italic">Phoronis MüLl
HELGOL,~NDER MEERESUNTERSUCHUNGEN Helgol~nder Meeresunters. 49, 255-281 (1995) Induction and regulation of metamorphosis in planktonic larvae: Phoronis m iilleri (Tentaculata) as archetype K. Herrmann Institut ffJr Zoologie der Universitfit Erlangen-Nfflrnberg; Staudtstr. 5, D-91058 Erlangen, Germany ABSTRACT: The larvae of Phoronis nffilleri are comprised of many diverse behavioural forms that can be manipulated experimentally to facilitate precise asseruons about the induction of metamor- phosis. Various parameters for inducing metamorphosis as exemplified in Phoronis. such as species- specific substrate bacteria, the cations Rb ~ Cs* and Hg 2+ and tensides, are considered, and their ecologic relevance to natural factors in the sea is demonstrated. Findings on metamorphosis in other marine larvae are summarized The function of marine bacteria as "ecological ushers" is particularly emphasized. INTRODUCTION The planktonic-benthic life cycle is of immense importance for many sessile or hemisessile benthic invertebrates of the sea. Drifting in the surface layers of the water, the larvae are able to colonize new ecologic niches, and the abundant phytoplankton there provides ample nourishment. The critical phase of this survival strategy is finding and recogmzing the substrate that is appropriate for the species. Since their sensory inventory is modest, it was formerly thought that the larvae reach the species-specific substrate by chance according to the "hit or miss" principle (Colman, 1933} and either survive or perish. More recently, ecologic studies and experiments have demonstrated that. despite the paucity of sensory apparatus, marine larvae are indeed able to recognize their species-specific substrate (Wilson, 1932, 1937, 1952; Cole & Knight-Jones. 1949: Knight-Jones. 1951: Crisp & Meadows, 1963: Gray, 1966: Chia & Rice.