Structure and Function of Leghemoglobins*
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The Evolution of Hemoglobin. by Ross Hardison
American Scientist March-April 1999 v87 i2 p126(1) Page 1 the evolution of hemoglobin. by Ross Hardison A comparative study of hemoglobin was conducted to explain how an ancestral single-function molecule gave rise to descending molecules with varied functions. Hemoglobin is the molecule in red blood cells responsible for giving blood its color and for carrying oxygen throughout the body. New functions of metallo-porphyrin rings or a kind of molecular cage embedded in proteins were developed with the appearance of atmospheric oxygen. The presence of hemoglobin in both oxygen-needing and non-oxygen needing organisms suggests the same evolutionary roots. © COPYRIGHT 1999 Sigma Xi, The Scientific Research If similar compounds are used in all of these reactions, Society then how do the different functions arise? The answer lies in the specific structure of the organic component, most Studies of a very ancient protein suggest that changes in often a protein, that houses the porphyrin ring. The gene regulation are an important part of the evolutionary configuration of each protein determines what biochemical story service the protein will perform. The appearance of atmospheric oxygen on earth between Because they have such an ancient lineage, the one and two billion years ago was a dramatic and, for the porphyrin-containing molecules provide scientists with a primitive single-celled creatures then living on earth, a rare opportunity to follow the creation of new biological potentially traumatic event. On the one hand, oxygen was compounds from existing ones. That is, how does an toxic. On the other hand, oxygen presented opportunities ancestral molecule with a single function give rise to to improve the process of metabolism, increasing the descendant molecules with varied functions? In my efficiency of life’s energy-generating systems. -
The Role of Methemoglobin and Carboxyhemoglobin in COVID-19: a Review
Journal of Clinical Medicine Review The Role of Methemoglobin and Carboxyhemoglobin in COVID-19: A Review Felix Scholkmann 1,2,*, Tanja Restin 2, Marco Ferrari 3 and Valentina Quaresima 3 1 Biomedical Optics Research Laboratory, Department of Neonatology, University Hospital Zurich, University of Zurich, 8091 Zurich, Switzerland 2 Newborn Research Zurich, Department of Neonatology, University Hospital Zurich, University of Zurich, 8091 Zurich, Switzerland; [email protected] 3 Department of Life, Health and Environmental Sciences, University of L’Aquila, 67100 L’Aquila, Italy; [email protected] (M.F.); [email protected] (V.Q.) * Correspondence: [email protected]; Tel.: +41-4-4255-9326 Abstract: Following the outbreak of a novel coronavirus (SARS-CoV-2) associated with pneumonia in China (Corona Virus Disease 2019, COVID-19) at the end of 2019, the world is currently facing a global pandemic of infections with SARS-CoV-2 and cases of COVID-19. Since severely ill patients often show elevated methemoglobin (MetHb) and carboxyhemoglobin (COHb) concentrations in their blood as a marker of disease severity, we aimed to summarize the currently available published study results (case reports and cross-sectional studies) on MetHb and COHb concentrations in the blood of COVID-19 patients. To this end, a systematic literature research was performed. For the case of MetHb, seven publications were identified (five case reports and two cross-sectional studies), and for the case of COHb, three studies were found (two cross-sectional studies and one case report). The findings reported in the publications show that an increase in MetHb and COHb can happen in COVID-19 patients, especially in critically ill ones, and that MetHb and COHb can increase to dangerously high levels during the course of the disease in some patients. -
Families and the Structural Relatedness Among Globular Proteins
Protein Science (1993), 2, 884-899. Cambridge University Press. Printed in the USA. Copyright 0 1993 The Protein Society -~~ ~~~~ ~ Families and the structural relatedness among globular proteins DAVID P. YEE AND KEN A. DILL Department of Pharmaceutical Chemistry, University of California, San Francisco, California94143-1204 (RECEIVEDJanuary 6, 1993; REVISEDMANUSCRIPT RECEIVED February 18, 1993) Abstract Protein structures come in families. Are families “closely knit” or “loosely knit” entities? We describe a mea- sure of relatedness among polymer conformations. Based on weighted distance maps, this measure differs from existing measures mainly in two respects: (1) it is computationally fast, and (2) it can compare any two proteins, regardless of their relative chain lengths or degree of similarity. It does not require finding relative alignments. The measure is used here to determine the dissimilarities between all 12,403 possible pairs of 158 diverse protein structures from the Brookhaven Protein Data Bank (PDB). Combined with minimal spanning trees and hier- archical clustering methods,this measure is used to define structural families. It is also useful for rapidly searching a dataset of protein structures for specific substructural motifs.By using an analogy to distributions of Euclid- ean distances, we find that protein families are not tightly knit entities. Keywords: protein family; relatedness; structural comparison; substructure searches Pioneering work over the past 20 years has shown that positions after superposition. RMS is a useful distance proteins fall into families of related structures (Levitt & metric for comparingstructures that arenearly identical: Chothia, 1976; Richardson, 1981; Richardson & Richard- for example, when refining or comparing structures ob- son, 1989; Chothia & Finkelstein, 1990). -
Regulation and Function of Hemoglobin in Barley Aleurone Tissue
Regulation and function of hemoglobin in barley aleurone tissue A thesis Subrritted to the Faculty of Graduate Studies The University of Manitoba by Xianzhou Nie In Partial Fulfilment of the Requirernent of the Degree of Doctor of Philosophy Department of Plant Science September 1 997 National Library Bibliothèque nationale i+lof Canada du Canada Acquisitions and Acquisitions et Bibliagraphic Services services bibliographiques 395 Wellington Street 395, nie Wellington Otfawa ON KiA ON4 -ON KlAON4 Canada Canada Yournb Votm &w>a Our &? Nom nlhirence The author has granted a non- L'auteur a accordé une licence non exclusive licence dowing the exclusive permettant a la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distribute or sell reproduire, prêter, distribuer ou copies of this thesis in microform, vendre des copies de cette thèse sous paper or electronic fomats . la forme de microfiche/film, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts korn it Ni la thèse ni des extraits substantiels may be printed or otherwise de celle-ci ne doivent être imprimés reproduced without the author's ou autrement reproduits sans son permission. autorisation. FACULTY OF GUDUATE STUDES **a** COPYRIGHT PERiWSSION PAGE A TbesidPracticum submitted to the Faculty of Graduate Studies of The University of Manitoba in partial fuliillment of the requirements of the degree of Xianzhou Nie 1997 (c) Permission has been granted to the Libnry of The University of Manitoba to lend or sel1 copies of this thesidpracticum, to the National Library of Canada to microfilm this thesis and to lend or seil copies of the film, rad to Dissertations Abstncts International to publisb an abstract of this thesidpracticum. -
Chain of Human Neutrophil Cytochrome B CHARLES A
Proc. Nati. Acad. Sci. USA Vol. 85, pp. 3319-3323, May 1988 Biochemistry Primary structure and unique expression of the 22-kilodalton light chain of human neutrophil cytochrome b CHARLES A. PARKOS*, MARY C. DINAUERt, LESLIE E. WALKER*, RODGER A. ALLEN*, ALGIRDAS J. JESAITIS*, AND STUART H. ORKINtt *Department of Immunology, Research Institute of the Scripps Clinic, La Jolla, CA 92037; tDivision of Hematology-Oncology, Children's Hospital, and Dana-Farber Cancer Institute, Department of Pediatrics, Harvard Medical School, Boston, MA 02115; and tHoward Hughes Medical Institute, Children's Hospital, Boston, MA 02115 Communicated by Harvey F. Lodish, January 14, 1988 ABSTRACT Cytochrome b comprising 91-kDa and 22- Cytochrome b purified from neutrophil membranes ap- kDa subunits is a critical component of the membrane-bound pears to be a heterodimer of a glycosylated 91-kDa heavy oxidase of phagocytes that generates superoxide. This impor- chain and a nonglycosylated 22-kDa light chain (10-12). The tant microbicidal system is impaired in inherited disorders 91-kDa subunit is encoded by a gene designated CGD, known as chronic granulomatous disease (CGD). Previously we residing at chromosomal position Xp2l, which originally was determined the sequence of the larger subunit from the cDNA identified on the basis of genetic linkage without reference to of the CGD gene, the X chromosome locus affected in "X- a specific protein product (8). Antisera generated to either a linked" CGD. To complete the primary structure of the synthetic peptide predicted from the cDNA or to a fusion cytochrome b and to assess expression of the smaller subunit, protein produced in E. -
Structure and Function of Class One Non-Symbiotic Plant Hemoglobins Ryan Thomas Sturms Iowa State University
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2013 Structure and function of class one non-symbiotic plant hemoglobins Ryan Thomas Sturms Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Part of the Biochemistry Commons Recommended Citation Sturms, Ryan Thomas, "Structure and function of class one non-symbiotic plant hemoglobins" (2013). Graduate Theses and Dissertations. 13054. https://lib.dr.iastate.edu/etd/13054 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Structure and function of class one non-symbiotic plant hemoglobins by Ryan Thomas Sturms A dissertation submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Major: Biochemistry Program of Study Committee: Mark Hargrove, Major Professor Alan DiSpirito Don Beitz John Robyt Laura Jarboe Iowa State University Ames, Iowa 2013 ii TABLE OF CONTENTS Page ACKNOWLEDGEMENTS .............................................................................................. iv ABSTRACT ....................................................................................................................... v CHAPTER 1 INTRODUCTION -
Sickle Cell Disease
Sickle cell disease Description Sickle cell disease is a group of disorders that affects hemoglobin, the molecule in red blood cells that delivers oxygen to cells throughout the body. People with this disease have atypical hemoglobin molecules called hemoglobin S, which can distort red blood cells into a sickle, or crescent, shape. Signs and symptoms of sickle cell disease usually begin in early childhood. Characteristic features of this disorder include a low number of red blood cells (anemia), repeated infections, and periodic episodes of pain. The severity of symptoms varies from person to person. Some people have mild symptoms, while others are frequently hospitalized for more serious complications. The signs and symptoms of sickle cell disease are caused by the sickling of red blood cells. When red blood cells sickle, they break down prematurely, which can lead to anemia. Anemia can cause shortness of breath, fatigue, and delayed growth and development in children. The rapid breakdown of red blood cells may also cause yellowing of the eyes and skin, which are signs of jaundice. Painful episodes can occur when sickled red blood cells, which are stiff and inflexible, get stuck in small blood vessels. These episodes deprive tissues and organs, such as the lungs, kidneys, spleen, and brain, of oxygen-rich blood and can lead to organ damage. A particularly serious complication of sickle cell disease is high blood pressure in the blood vessels that supply the lungs (pulmonary hypertension), which can lead to heart failure. Pulmonary hypertension occurs in about 10 percent of adults with sickle cell disease. Frequency Sickle cell disease affects millions of people worldwide. -
Hemoglobin C
Hemoglobin C Hemoglobin C trait is an inherited blood trait. It is most make plenty of hemoglobin A, but you also make often found in people whose ancestors came from a less common type of hemoglobin, called Africa, Italy, Greece, Latin America, and the Caribbean hemoglobin C. This is not a disease and does region, but it can also be found in people with ancestry not affect your health. This trait can cause the from other parts of the world. To understand this red blood cells to be slightly smaller than usual. condition, it helps to know more about how your blood Sometimes, this is mistaken for low iron levels is made. (iron-deficiency anemia). However, taking an iron supplement does not change the size of the Hemoglobin red blood cells. Your blood contains millions of red blood cells. Each of your red blood cells has hemoglobin, which gives Hemoglobin C trait does not change into a blood blood its red color and carries oxygen throughout your disease. The importance of identifying body. Hemoglobin is made by combining a “heme” hemoglobin C trait is that it helps find couples portion (iron) and a “globin” portion (protein). The iron whose children may be born with a related blood comes from the food you eat and your body makes the disease. Your chance for having a child with a globins. blood disease depends on whether or not your partner has a blood trait, and, if so, which trait There are different kinds of hemoglobin that the body they have. can make. The most common kind in an adult is hemoglobin A. -
Research Article Association Between HBA Locus Copy Number Gains And
INTERNATIONAL JOURNAL OF MEDICAL BIOCHEMISTRY DOI: 10.14744/ijmb.2021.65477 Int J Med Biochem 2021;4(2):91-6 Research Article Association between HBA locus copy number gains and pathogenic HBB gene variants Guven Toksoy1, Nergis Akay2, Agharza Aghayev1, Volkan Karaman1, Sahin Avci1, Tugba Kalayci1, Umut Altunoglu1, Zeynep Karakas2, Zehra Oya Uyguner1 1Department of Medical Genetics, Istanbul University Istanbul Faculty of Medicine, Istanbul, Turkey 2Department of Pediatric Hematology-Oncology, Istanbul University Istanbul Faculty of Medicine, Istanbul, Turkey Abstract Objectives: Alpha (α) and beta (β) thalassemia are the most prevalent genetic hematological disorders. The co-occur- rence of silent β-thalassemia with excess α-globin gene copies is associated with the thalassemia intermedia pheno- type. This study was an investigation of the α-globulin gene dosage and sequence variations in thalassemia patients. Methods: Multiplex ligation-dependent probe amplification and Sanger sequencing were used to identify the hemo- globin subunit alpha 1 (HBA1) and HBA2 gene alterations in 32 patients. Deletion, duplication, and other findings were analyzed in the index cases and family members. Results: Four of the 32 cases (12.5%) were found to have gross duplications. Two cases demonstrated α-globin triplica- tion, and 2 had a quadruplicated HBA1/2 genes. Affected family members revealed genotype-phenotype correlation. In 1 patient, it was observed that quadruplicated HBA genes co-occurrence with hemoglobin subunit beta (HBB) mu- tation was inherited from his mother. Notably, the mother did not demonstrate any thalassemia phenotype. Further investigation showed that the mother was carrying a single copy HBA gene deletion in the trans allele that explained her clinical condition. -
Myoglobin/Hemoglobin O2 Binding and Allosteric Properties
Myoglobin/Hemoglobin O2 Binding and Allosteric Properties of Hemoglobin •Hemoglobin binds and transports H+, O2 and CO2 in an allosteric manner •Allosteric interaction - a regulatory mechanism where a small molecule (effector) binds and alters an enzymes activity ‘globin Function O does not easily diffuse in muscle and O is toxic to biological 2 2 systems, so living systems have developed a way around this. Physiological roles of: – Myoglobin • Transports O2 in rapidly respiring muscle • Monomer - single unit • Store of O2 in muscle high affinity for O2 • Diving animals have large concentration of myoglobin to keep O2 supplied to muscles – Hemoglobin • Found in red blood cells • Carries O2 from lungs to tissues and removes CO2 and H+ from blood to lungs • Lower affinity for O2 than myoglobin • Tetrameter - two sets of similar units (α2β2) Myo/Hemo-globin • Hemoglobin and myoglobin are oxygen- transport and oxygen-storage proteins, respectively • Myoglobin is monomeric; hemoglobin is tetrameric – Mb: 153 aa, 17,200 MW – Hb: two α chains of 141 residues, 2 β chains of 146 residues X-ray crystallography of myoglobin – mostly α helix (proline near end of each helix WHY?) – very small due to the folding – hydrophobic residues oriented towards the interior of the protein – only polar aas inside are 2 histidines Structure of heme prosthetic group Protoporphyrin ring w/ iron = heme Oxygenation changes state of Fe – Purple to red color of blood, Fe+3 - brown Oxidation of Fe+2 destroys biological activity of myoglobin Physical barrier of protein -
THE CHEMISTRY of HÆOGLOBIN and MYOGLOBIN in RELATION to the COLOR of MEAT DISSERTATION Presented in Partial Fulfillment Of
THE CHEMISTRY OF HÆOGLOBIN AND MYOGLOBIN IN RELATION TO THE COLOR OF MEAT DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By HOWARD NED DRAUDT, B.Sc., M.Sc. The Ohio State University 1955 Approved by: Adviser The Department of Agricultural Biochemistry TABLE OF CONTENTS Page INTRODUCTION ........................................... 1 LITERATURE SURVEY ....................................... 3 Myoglobin and Hemoglobin.... .................... 3 Methemoglobin or Metmyoglobin Formation ......... 7 The Action of Nitrites on Hemoglobin and Myoglobin ... 11 The Effect of pH on Curing ..... 18 The Effect of Reducing Agents in Meat Curing ....... 19 Heating and Hemochrome Formation... ................ 21 Color Loss in Cured Products ..... 2k EXPERIMENTAL PROCEDURE .................................. 27 Obj ect of the Investigation ......... 27 The Effect of Heating on Color Fixation and Color Stability.......... 29 Isolation of Metmj'-oglobin ........................ 37 Qualitative Experiments on the Effect of Possible Meat Components on Discoloration ...................... 39 Spectroscopy of the Pigment ...... 54 Manometric Experiments ....... 6l Preparation of Samples ........ 62 Warburg Experiments with Heat Fractionated Pigment ... 65 Gas Uptake in the Presence of Sodium Pyruvate ...... 70 Results of Warburg Experiments with Purified Pigment in which Nitrate and Nitrite were not Determined ..... 72 ii Page The Effect of Oleic Acid on Oxygen -
Chromosomal Arrangement of Leghemoglobin Genes in Soybean
Chromosomal Arrangement of Leghemoglobin Genes in Soybean and Kidney Bean by Jong Seob Lee A thesis submitted to the Faculty of Graduate Studies and Research in partial fulfillment of the requirements for the degree of c Doctor of Philosophy Department of Biology MoGill University Montreal, Quebec Canada July 1984 Copyright @ Jong Seob Lee, 1984 0 To my wife Jung Sun 0 i ABSTRACT Leghemoglobin (Lb) genes are induced only following infection of the leguroo plant by Rhizobium. In soybean, there are four major leghemoglobins which are encoded by four separate genes. A chroroosoma.l walk has been carried out to investigate the arrangement of these Lb genes on the soybean chromosome by screening Alui-Haeiii and EcoRI genomic libraries. A cluster of four different Lb genes was isolated from the libraries in a set of overlapping clones which together include 45 kilobases (kb) of contiguous OOA. These four Lb genes, including a pseudogene, are present in the same transcriptional orientation and are arranged in the order: 5'-Lba.-Lbc -Lb 1/J -Lbc -3'. The intergenic regions average 2.5 kb. 1 1 3 In adddion to the main locus, there are other Lb genes in three other loci which do not appear to be contiguous to this locus. The second locus contains another leghemoglobin (Lbc2) gene and a second pseudo (truncated) gene. The two other loci only contain truncated sequences. A sequence which appears to be comnon to the 3' regions of all the Lb loci was found flanking the Lbc3 gene. The 3' flanking region of the main locus also contains a sequence that appears to be expressed more abundantly in root tissue.