Application of Nitrogen-Fixing Systems in Soil Management
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Host-Secreted Antimicrobial Peptide Enforces Symbiotic Selectivity in Medicago Truncatula
Host-secreted antimicrobial peptide enforces symbiotic selectivity in Medicago truncatula Qi Wanga, Shengming Yanga, Jinge Liua, Kata Terecskeib, Edit Ábrahámb, Anikó Gombárc, Ágota Domonkosc, Attila Szucs} b, Péter Körmöczib, Ting Wangb, Lili Fodorc, Linyong Maod,e, Zhangjun Feid,e, Éva Kondorosib,1, Péter Kalóc, Attila Keresztb, and Hongyan Zhua,1 aDepartment of Plant and Soil Sciences, University of Kentucky, Lexington, KY 40546; bInstitute of Biochemistry, Biological Research Center, Szeged 6726, Hungary; cNational Agricultural Research and Innovation Centre, Agricultural Biotechnology Institute, Gödöllo} 2100, Hungary; dBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853; and eU.S. Department of Agriculture–Agricultural Research Service Robert W. Holley Center for Agriculture and Health, Cornell University, Ithaca, NY 14853 Contributed by Éva Kondorosi, February 14, 2017 (sent for review January 17, 2017; reviewed by Rebecca Dickstein and Julia Frugoli) Legumes engage in root nodule symbioses with nitrogen-fixing effectors or microbe-associated molecular patterns (MAMPs) soil bacteria known as rhizobia. In nodule cells, bacteria are enclosed such as surface polysaccharides to facilitate their invasion of the in membrane-bound vesicles called symbiosomes and differentiate host (7, 8). Therefore, effector- or MAMP-triggered plant im- into bacteroids that are capable of converting atmospheric nitrogen munity mediated by intracellular nucleotide binding/leucine-rich into ammonia. Bacteroid differentiation -
Human Alteration of the Global Nitrogen Cycle
What is Nitrogen? Human Alteration of the Nitrogen is the most abundant element in Global Nitrogen Cycle the Earth’s atmosphere. Nitrogen makes up 78% of the troposphere. Nitrogen cannot be absorbed directly by the plants and animals until it is converted into compounds they can use. This process is called the Nitrogen Cycle. Heather McGraw, Mandy Williams, Suzanne Heinzel, and Cristen Whorl, Give SIUE Permission to Put Our Presentation on E-reserve at Lovejoy Library. The Nitrogen Cycle How does the nitrogen cycle work? Step 1- Nitrogen Fixation- Special bacteria convert the nitrogen gas (N2 ) to ammonia (NH3) which the plants can use. Step 2- Nitrification- Nitrification is the process which converts the ammonia into nitrite ions which the plants can take in as nutrients. Step 3- Ammonification- After all of the living organisms have used the nitrogen, decomposer bacteria convert the nitrogen-rich waste compounds into simpler ones. Step 4- Denitrification- Denitrification is the final step in which other bacteria convert the simple nitrogen compounds back into nitrogen gas (N2 ), which is then released back into the atmosphere to begin the cycle again. How does human intervention affect the nitrogen cycle? Nitric Oxide (NO) is released into the atmosphere when any type of fuel is burned. This includes byproducts of internal combustion engines. Production and Use of Nitrous Oxide (N2O) is released into the atmosphere through Nitrogen Fertilizers bacteria in livestock waste and commercial fertilizers applied to the soil. Removing nitrogen from the Earth’s crust and soil when we mine nitrogen-rich mineral deposits. Discharge of municipal sewage adds nitrogen compounds to aquatic ecosystems which disrupts the ecosystem and kills fish. -
Global Distribution Patterns of Marine Nitrogen-Fixers by Imaging and Molecular Methods Running Title: Diazotrophs in Tara Oceans
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.17.343731; this version posted April 1, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods Running title: Diazotrophs in Tara Oceans Juan José Pierella Karlusich1,2, Eric Pelletier2,3,, Fabien Lombard2,5,8 , Madeline Carsique1, Etienne Dvorak1, Sébastien Colin4,6,10, Marc Picheral2,5, Francisco M. Cornejo-Castillo4, Silvia G. Acinas7, Rainer Pepperkok2,6, Eric Karsenti1,2,6, Colomban de Vargas2,4, Patrick Wincker2,3, Chris Bowler1,2*, Rachel A Foster 9* 1 Institut de Biologie de l'ENS (IBENS), Département de biologie, École normale supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France 2 CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016 Paris, France 3 Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France 4 Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR 7144, ECOMAP, 29680 Roscoff, France 5 Sorbonne Universités, CNRS, Laboratoire d'Océanographie de Villefranche (LOV), 06230 Villefranche-sur-Mer, France 6 European Molecular Biology Laboratory, Heidelberg, Germany 7 Department of Marine Biology and Oceanography, Institut de Ciènces del -
Nitrogen Fixation Among Marine Bacterioplankton
Nitrogen Fixation Among Marine Bacterioplankton Kjärstin H. Boström Department of Biology & Environmental Science University of Kalmar Sweden 2006 AKADEMISK AVHANDLING som för avläggande av Filosofie Doktorsexamen vid Naturvetenskapliga Fakulteten vid högskolan i Kalmar kommer att offentligt försvaras fredagen den 20 januari 2006 Doctoral thesis 2006 University of Kalmar Faculty of Natural Sciences Dissertation series No. 26 Kjärstin H. Boström Department of Biology and Environmental Science University of Kalmar, SE 391 82 Kalmar, Sweden Supervisor: Dr. Lasse Riemann, Assistant Professor Department of Biology and Environmental Science University of Kalmar, SE 391 82 Kalmar, Sweden Opponent: Dr. Grieg Steward, Assistant Professor Department of Oceanography University of Hawaii, Honolulu, HI 96822, USA 2006 Kjärstin H. Boström ISBN: 91-89584-52-X, ISSN: 1650-2779, pp. 1-26 Printed by: Högskolans tryckeri, Kalmar 2 To Frida & Emma 3 TABLE OF CONTENTS TABLE OF CONTENTS.............................................................................................................4 ABSTRACT...................................................................................................................................5 SVENSK SAMMANFATTNING...............................................................................................6 LIST OF PUBLICATIONS.........................................................................................................8 INTRODUCTION ........................................................................................................................9 -
Diversity of Free-Living Nitrogen Fixing Bacteria in the Badlands of South Dakota Bibha Dahal South Dakota State University
South Dakota State University Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange Theses and Dissertations 2016 Diversity of Free-living Nitrogen Fixing Bacteria in the Badlands of South Dakota Bibha Dahal South Dakota State University Follow this and additional works at: http://openprairie.sdstate.edu/etd Part of the Bacteriology Commons, and the Environmental Microbiology and Microbial Ecology Commons Recommended Citation Dahal, Bibha, "Diversity of Free-living Nitrogen Fixing Bacteria in the Badlands of South Dakota" (2016). Theses and Dissertations. 688. http://openprairie.sdstate.edu/etd/688 This Thesis - Open Access is brought to you for free and open access by Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. For more information, please contact [email protected]. DIVERSITY OF FREE-LIVING NITROGEN FIXING BACTERIA IN THE BADLANDS OF SOUTH DAKOTA BY BIBHA DAHAL A thesis submitted in partial fulfillment of the requirements for the Master of Science Major in Biological Sciences Specialization in Microbiology South Dakota State University 2016 iii ACKNOWLEDGEMENTS “Always aim for the moon, even if you miss, you’ll land among the stars”.- W. Clement Stone I would like to express my profuse gratitude and heartfelt appreciation to my advisor Dr. Volker Brӧzel for providing me a rewarding place to foster my career as a scientist. I am thankful for his implicit encouragement, guidance, and support throughout my research. This research would not be successful without his guidance and inspiration. -
Nitrogenase; Nitrogen Fixation Vs Haber-Bosch Process
Nitrogenase; Nitrogen Fixation vs Haber-Bosch Process Anna Balinski, Jacob Watson Texas A&M University, College Station, TX 77843 Abstract Comparison of Processes Haber-Bosch Process Overview:The Nitrogen Cycle is a chemical cycle which recycles nitrogen into usable forms, such as ammonium, nitrates, and nitrites. Nitrogen and nitrogen compounds are important Haber-Bosch Reaction because they make up our atmosphere as well as our earthly environments. Nitrogen can be recycled into ammonium naturally via nitrogen fixing bacteria, or synthetically using the + - Discovered by Fritz Haber, process scaled up by Haber-Bosch process. Nitrogen fixation in bacteria follows the reaction N2 + 8 H + 8 e 2 • Carl Bosch NH3 + H2 and is powered by the hydrolysis of 16 ATP equivalents. The Haber-Bosch process Response to Germany’s need for ammonia for follows the reaction scheme of N2 + 3 H2 2 NH3 and is powered by using high pressures, • temperatures, and catalysts. Using the Haber-Bosch process an optimum yield of 97% explosive during WWI ammonium can be obtained. These reactions both use diatomic nitrogen as well as Nitrogen Fixation Reaction • Prolonged WWI when Germany was able to hydrogen, but differ in their final products as bacterial nitrogen fixation releases hydrogen produce fertilizer and explosives gas as a byproduct. Bacteria in the soil use nitrogen to create energy to grow and reproduce Fritz Haber Carl Bosch as well as to introduce nitrogen for use by other species. The Haber-Bosch process produces ammonium which can be used for a range of activities such as the production of fertilizers, or even explosives. -
The Effects of Herbicides on Microbial and Mycorrhizal Populations in Native Prairie, Corn, and Non-Native Prairie Vegetation, Using the Biolog Technique
University of Northern Iowa UNI ScholarWorks Dissertations and Theses @ UNI Student Work 1996 The effects of herbicides on microbial and mycorrhizal populations in native prairie, corn, and non-native prairie vegetation, using the Biolog technique Susann E. Ahrabi-Fard University of Northern Iowa Let us know how access to this document benefits ouy Copyright ©1996 Susann E. Ahrabi-Fard Follow this and additional works at: https://scholarworks.uni.edu/etd Part of the Botany Commons, and the Environmental Studies Commons Recommended Citation Ahrabi-Fard, Susann E., "The effects of herbicides on microbial and mycorrhizal populations in native prairie, corn, and non-native prairie vegetation, using the Biolog technique" (1996). Dissertations and Theses @ UNI. 196. https://scholarworks.uni.edu/etd/196 This Open Access Thesis is brought to you for free and open access by the Student Work at UNI ScholarWorks. It has been accepted for inclusion in Dissertations and Theses @ UNI by an authorized administrator of UNI ScholarWorks. For more information, please contact [email protected]. Copyright by SUSANN E. AHRABI-FARD May 1996 All Rights Reserved THE EFFECTS OF HERBICIDES ON MICROBIAL AND MYCORRHIZAL POPULATIONS IN NATIVE PRAIRIE, CORN, AND NON-NATIVE PRAIRIE VEGETATION, USING THE BIOLOG TECHNIQUE An Abstract of a Thesis Submitted In Partial Fulfillment of the Requirements for the Degree of Master of Science Susann E. Ahrabi - Fard University of Northern Iowa May 1996 LIBRARY UNIVERSITY Of NORTHERN IOWA CEDAR fAllS, IOWA .· ABSTRACT Soil bioremediation has primarily focused on the use of free living, actively growing microorganisms to degrade toxic organic substances. Recently, however, plants and rhizosphere activity, including mycorrhizal fungi have been increasingly studied to determine the role that consortial assemblages may play in bioremediation. -
Breeding Maize Under Biodynamic-Organic Conditions For
Open Agriculture. 2019; 4: 322–345 Research Article W. Goldstein*, A.A. Jaradat, C. Hurburgh, L.M. Pollak, and M. Goodman Breeding maize under biodynamic-organic conditions for nutritional value and N efficiency/N2 fixation https://doi.org/10.1515/opag-2019-0030 Keywords: methionine, gametophytic incompatibility, received September 1, 2018; accepted February 12, 2019 epigenetics, isolation by environment Abstract: An overview is given for an ongoing maize breeding program that improves populations, inbreds, and hybrids in the Midwestern USA. Breeding and selection 1 Introduction occurred under biodynamic conditions in Wisconsin, on an organic winter nursery in Puerto Rico, a biodynamic winter Biodynamic and organic farming practices intend to nursery in Hawaii, and a conventional winter nursery in produce products that are healthier for the public and Chile. Emphasis is on improving protein quality, carotenoid have greater benefits for the environment. Our question content, competitiveness with weeds, nitrogen (N) has been to explore how breeding and selection under efficiency/N2 fixation, and cross incompatibility to pollen low-mineral input, biodynamic/organic conditions from genetically engineered (GE) maize. Philosophy is that might increase adaptiveness as well as nutritional value, the plant species is a responding partner in the breeding protein quality, and nutrient efficiency. This paper will process. Adaptation and selection emphasizes vigor and outline the philosophy, methods, and results of a maize yield under N limited conditions. The Ga1 and Tcb1 alleles breeding program for biodynamic/organic farmers and were utilized to induce cross incompatibility. The program describe results from a few pertinent experiments relating resulted in inbreds and hybrids with increased N efficiency to adaptation and nitrogen efficiency that have helped to and protein quality coupled with softer grain texture, more guide its efforts. -
(Cyanobacterial Genera) 2014, Using a Polyphasic Approach
Preslia 86: 295–335, 2014 295 Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach Taxonomické hodnocení cyanoprokaryot (cyanobakteriální rody) v roce 2014 podle polyfázického přístupu Jiří K o m á r e k1,2,JanKaštovský2, Jan M a r e š1,2 & Jeffrey R. J o h a n s e n2,3 1Institute of Botany, Academy of Sciences of the Czech Republic, Dukelská 135, CZ-37982 Třeboň, Czech Republic, e-mail: [email protected]; 2Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, CZ-370 05 České Budějovice, Czech Republic; 3Department of Biology, John Carroll University, University Heights, Cleveland, OH 44118, USA Komárek J., Kaštovský J., Mareš J. & Johansen J. R. (2014): Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach. – Preslia 86: 295–335. The whole classification of cyanobacteria (species, genera, families, orders) has undergone exten- sive restructuring and revision in recent years with the advent of phylogenetic analyses based on molecular sequence data. Several recent revisionary and monographic works initiated a revision and it is anticipated there will be further changes in the future. However, with the completion of the monographic series on the Cyanobacteria in Süsswasserflora von Mitteleuropa, and the recent flurry of taxonomic papers describing new genera, it seems expedient that a summary of the modern taxonomic system for cyanobacteria should be published. In this review, we present the status of all currently used families of cyanobacteria, review the results of molecular taxonomic studies, descriptions and characteristics of new orders and new families and the elevation of a few subfamilies to family level. -
NOSTOCALES, CYANOBACTERIA): CONVERGENT EVOLUTION RESULTING in a CRYPTIC GENUS Sergey Shalygin John Carroll University, [email protected]
John Carroll University Carroll Collected Masters Theses Theses, Essays, and Senior Honors Projects Winter 2016 CYANOMARGARITA GEN. NOV. (NOSTOCALES, CYANOBACTERIA): CONVERGENT EVOLUTION RESULTING IN A CRYPTIC GENUS Sergey Shalygin John Carroll University, [email protected] Follow this and additional works at: http://collected.jcu.edu/masterstheses Part of the Biology Commons Recommended Citation Shalygin, Sergey, "CYANOMARGARITA GEN. NOV. (NOSTOCALES, CYANOBACTERIA): CONVERGENT EVOLUTION RESULTING IN A CRYPTIC GENUS" (2016). Masters Theses. 21. http://collected.jcu.edu/masterstheses/21 This Thesis is brought to you for free and open access by the Theses, Essays, and Senior Honors Projects at Carroll Collected. It has been accepted for inclusion in Masters Theses by an authorized administrator of Carroll Collected. For more information, please contact [email protected]. CYANOMARGARITA GEN. NOV. (NOSTOCALES, CYANOBACTERIA): CONVERGENT EVOLUTION RESULTING IN A CRYPTIC GENUS A Thesis Submitted to the Office of Graduate Studies College of Arts & Sciences of John Carroll University In Partial Fulfillment of the Requirements For the Degree of Master of Science By Sergei Shalygin 2016 The thesis of Sergei Shalygin is hereby accepted: ., µ_ fJo., t fvt8fl'_ 7 <>U, Reader - C · opher A. Sheil Date M,UJf� Reader - Michael P. Martin Date I 2 - z ,, Reader - Nicole Pietrasiak Date ---1-1 - z z - <ot<e Date I certify that this is the copy or the original document \I - 22- �{ {) Author - Sergei Shalygin Date ACKNOWLEDGEMENTS I thank John Carroll University for salary support, supplies and use of laboratory facilities, and supportive faculty and staff in the Biology Department. Additionally, I am grateful to all lab mates from the Johansen laboratory for useful discussion of the work. -
Research Report 32 Cylindro- Spermopsis Raciborskii
Regulation of lindrospermopsin Production by the Cyanobacterium Research Report 32 Cylindro- spermopsis raciborskii Research Report 32 Regulation of Cylindrospermopsin Production by the Cyanobacterium Cylindrospermopsis raciborskii Christopher P. Saint Australian Water Quality Centre Research Report No 32 March 2007 CRC for Water Quality and Treatment Research Report 32 © CRC for Water Quality and Treatment 2007 DISCLAIMER • The Cooperative Research Centre for Water Quality and Treatment and individual contributors are not responsible for the outcomes of any actions taken on the basis of information in this research report, nor for any errors and omissions. • The Cooperative Research Centre for Water Quality and Treatment and individual contributors disclaim all and any liability to any person in respect of anything, and the consequences of anything, done or omitted to be done by a person in reliance upon the whole or any part of this research report. • The research report does not purport to be a comprehensive statement and analysis of its subject matter, and if further expert advice is required, the services of a competent professional should be sought. The Cooperative Research Centre for Water Quality and Treatment Private Mail Bag 3 Salisbury South Australia, 5108 AUSTRALIA Telephone: +61 8 8259 0211 Fax: 61 +61 8 8259 0228 Email: crc@sawater. Com .au Web site: www.waterquality.crc.org.au Regulation of Cylindrospermopsin Production Research Report 32 ISBN 1876616571 iii CRC for Water Quality and Treatment Research Report 32 Contents Figures and Tables ii Publications iii Foreword iv Executive Summary v 1 INTRODUCTION 1 1.1 Cyanobacteria (Blue-green Algae) 1 1.2 The Significance of C. -
Colonization of Rice Rooks by Diazotroph Bacteria
Environmental Role of Nitrogen-fixing Blue-green Algae and Asymbiotic Bacteria Ecol. Bull. (Stockholm) 26: 305-311 (1978). COLONIZATION OF RICE ROOTS BY DIAZOTROPH BACTERIA G. Diem, M. Rougier, I. Hamad-Fares, J.P. Balandreau & Y.R. Dommergues I Abstract I Colonization of roots of rice grown in agar, in sand and in soil, by diazotroph bacteria was studied by direct observations (scanning and transmission electron microscopy) and by an indirect method (assessment of loca- tion of diazotrophs along the roots through cultural methods together with Acetylene Reduction Activity - ARA - tests). Since basal rmt segments appeared to show significant ARA and to be inhabited by living diazotrophs, these microorganisms were thought to be protected against deleterious effects from the outside by barriers which are discussed. I Introduction A profuse and durable colonization of roots by diazotroph bacteria is a prerequisite for the establishment of a beneficial association between these bacteria and the host plant. Unfortunately many strains of diazotrophs (e.g. Azotobacter) known as efficient N2- fixing microorganisms are not true rhizosphere bacteria (Brown, 1974). They are unable to thrive in the rhizosphere and their decline in the root zone is probably the major cause of the failure of inoculations with diazotrophs. But recently a tight plant - diazotroph association (Spirillum lipoferum - Digitaria decumbens cv transvala) was described by Döbereiner & Day (1976). In this association S. lipoferum appeared to be localized in the cells of the cortex. The studies presented here are related to the root colonization of rice grown in the field or in gnotobiotic conditions. In this paper diazotroph bacteria which are assumed to be located in the root cortex are designated as endorhizospheric bacteria.