Marine Microorganisms and Global Nutrient Cycles Kevin R
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Host-Secreted Antimicrobial Peptide Enforces Symbiotic Selectivity in Medicago Truncatula
Host-secreted antimicrobial peptide enforces symbiotic selectivity in Medicago truncatula Qi Wanga, Shengming Yanga, Jinge Liua, Kata Terecskeib, Edit Ábrahámb, Anikó Gombárc, Ágota Domonkosc, Attila Szucs} b, Péter Körmöczib, Ting Wangb, Lili Fodorc, Linyong Maod,e, Zhangjun Feid,e, Éva Kondorosib,1, Péter Kalóc, Attila Keresztb, and Hongyan Zhua,1 aDepartment of Plant and Soil Sciences, University of Kentucky, Lexington, KY 40546; bInstitute of Biochemistry, Biological Research Center, Szeged 6726, Hungary; cNational Agricultural Research and Innovation Centre, Agricultural Biotechnology Institute, Gödöllo} 2100, Hungary; dBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853; and eU.S. Department of Agriculture–Agricultural Research Service Robert W. Holley Center for Agriculture and Health, Cornell University, Ithaca, NY 14853 Contributed by Éva Kondorosi, February 14, 2017 (sent for review January 17, 2017; reviewed by Rebecca Dickstein and Julia Frugoli) Legumes engage in root nodule symbioses with nitrogen-fixing effectors or microbe-associated molecular patterns (MAMPs) soil bacteria known as rhizobia. In nodule cells, bacteria are enclosed such as surface polysaccharides to facilitate their invasion of the in membrane-bound vesicles called symbiosomes and differentiate host (7, 8). Therefore, effector- or MAMP-triggered plant im- into bacteroids that are capable of converting atmospheric nitrogen munity mediated by intracellular nucleotide binding/leucine-rich into ammonia. Bacteroid differentiation -
Municipal Wastewater Denitrification Evaluation City of Windom, Minnesota
Municipal Wastewater Denitrification Evaluation City of Windom, Minnesota July 29, 2016 – Revised November 4, 2016 Bolton & Menk, Inc. Project No. T22.109023 Prepared by: Submitted by: Bolton & Menk, Inc. 12224 Nicollet Blvd Burnsvillle, MN 55337 P: 952-890-0509 F: 952-890-8065 wq-wwtp5-91 MUNICIPAL WASTEWATER DENITRIFICATION EVALUATION CITY OF WINDOM, MINNESOTA JULY 2016 BMI Project No. T22.109023 I hereby certify that this plan, specification or report was prepared by me or under my direct supervision, and that I am a duly Licensed Professional Engineer under the laws of the State of Minnesota. Signature: Typed or Printed Name: Lana Tullis, P.E. Date: July 29, 2016 Lic. No. 41450 I hereby certify that this plan, specification or report was prepared by me or under my direct supervision, and that I am a duly Licensed Professional Engineer under the laws of the State of Minnesota. Signature: Typed or Printed Name: Herman Dharmarajah, Ph.D., P.E. Date: July 29, 2016 Lic. No. 18256 I hereby certify that this plan, specification or report was prepared by me or under my direct supervision, and that I am a duly Licensed Professional Engineer under the laws of the State of Minnesota. BOLTON & MENK, INC. CONSULTING ENGINEERS AND LAND SURVEYORS This page intentionally left blank. TABLE OF CONTENTS SECTION 1 INTRODUCTION ............................................................................................... 1-1 A. Project Background ........................................................................................ 1-1 B. Nitrate Standards -
Human Alteration of the Global Nitrogen Cycle
What is Nitrogen? Human Alteration of the Nitrogen is the most abundant element in Global Nitrogen Cycle the Earth’s atmosphere. Nitrogen makes up 78% of the troposphere. Nitrogen cannot be absorbed directly by the plants and animals until it is converted into compounds they can use. This process is called the Nitrogen Cycle. Heather McGraw, Mandy Williams, Suzanne Heinzel, and Cristen Whorl, Give SIUE Permission to Put Our Presentation on E-reserve at Lovejoy Library. The Nitrogen Cycle How does the nitrogen cycle work? Step 1- Nitrogen Fixation- Special bacteria convert the nitrogen gas (N2 ) to ammonia (NH3) which the plants can use. Step 2- Nitrification- Nitrification is the process which converts the ammonia into nitrite ions which the plants can take in as nutrients. Step 3- Ammonification- After all of the living organisms have used the nitrogen, decomposer bacteria convert the nitrogen-rich waste compounds into simpler ones. Step 4- Denitrification- Denitrification is the final step in which other bacteria convert the simple nitrogen compounds back into nitrogen gas (N2 ), which is then released back into the atmosphere to begin the cycle again. How does human intervention affect the nitrogen cycle? Nitric Oxide (NO) is released into the atmosphere when any type of fuel is burned. This includes byproducts of internal combustion engines. Production and Use of Nitrous Oxide (N2O) is released into the atmosphere through Nitrogen Fertilizers bacteria in livestock waste and commercial fertilizers applied to the soil. Removing nitrogen from the Earth’s crust and soil when we mine nitrogen-rich mineral deposits. Discharge of municipal sewage adds nitrogen compounds to aquatic ecosystems which disrupts the ecosystem and kills fish. -
Nitrogen Metabolism in Phytoplankton - Y
MARINE ECOLOGY – Nitrogen Metabolism in Phytoplankton - Y. Collos, J. A. Berges NITROGEN METABOLISM IN PHYTOPLANKTON Y. Collos Laboratoire d'Hydrobiologie CNRS, Université Montpellier II, France J. A. Berges School of Biology and Biochemistry, Queen's University of Belfast, UK Keywords: uptake, reduction, excretion, proteases, chlorophyllases, cell death. Contents 1. Introduction 2. Availability and use of different forms of nitrogen 2.1 Nitrate 2.2. Nitrite 2.3. Ammonium 2.4. Molecular N2 2.5. Dissolved organic N (DON) 2.6. Particulate nitrogen (PN) 3. Assimilation pathways 4. Accumulation and storage 4.1. Inorganic compounds 4.2. Organic compounds 5. Nutrient classification and preferences 6. Plasticity in cell composition 7. Overflow mechanisms: excretion and release processes 8. Recycling of N within the cell 9. Degradation pathways 9.1. Requirements for and roles of degradation 9.2. How is degradation accomplished? 9.3. Variation in degradation 9.4. Pathogenesis and Cell Death 10. From uptake to growth: time-lag phenomena 11. Relationships with carbon metabolism 12. Future directions AcknowledgementsUNESCO – EOLSS Glossary Bibliography SAMPLE CHAPTERS Biographical Sketches Summary Phytoplankton use a large variety of nitrogen compounds and are extremely well adapted to fluctuating environmental conditions by a high capacity to change their chemical composition.Degradation and turnover of nitrogen within phytoplankton is essential for many processes including normal cell maintenance, acclimations to changes in light, salinity, and nutrients, and cell defence against pathogens. The ©Encyclopedia of Life Support Systems (EOLSS) MARINE ECOLOGY – Nitrogen Metabolism in Phytoplankton - Y. Collos, J. A. Berges pathways by which N degradation is accomplished are very poorly understood, but based on work in higher plant species, protein degradation is likely to be of central importance. -
Human Alteration of the Global Nitrogen Cycle: Causes And
Published by the Ecological Society of America Number 1, Spring 1997 Causes andConsequences Human Alterationofthe Issues in EcologyGlobal NitrogenCycle: Photo by Nadine Cavender Issues in Ecology Number 1 Spring 1997 Human Alteration of the Global Nitrogen Cycle: Causes and Consequences SUMMARY Human activities are greatly increasing the amount of nitrogen cycling between the living world and the soil, water, and atmosphere. In fact, humans have already doubled the rate of nitrogen entering the land-based nitrogen cycle, and that rate is continuing to climb. This human-driven global change is having serious impacts on ecosystems around the world because nitrogen is essential to living organisms and its availability plays a crucial role in the organization and functioning of the worlds ecosystems. In many ecosystems on land and sea, the supply of nitrogen is a key factor controlling the nature and diversity of plant life, the population dynamics of both grazing animals and their predators, and vital ecologi- cal processes such as plant productivity and the cycling of carbon and soil minerals. This is true not only in wild or unmanaged systems but in most croplands and forestry plantations as well. Excessive nitrogen additions can pollute ecosystems and alter both their ecological functioning and the living communities they support. Most of the human activities responsible for the increase in global nitrogen are local in scale, from the production and use of nitrogen fertilizers to the burning of fossil fuels in automobiles, power generation plants, and industries. However, human activities have not only increased the supply but enhanced the global movement of various forms of nitrogen through air and water. -
Global Distribution Patterns of Marine Nitrogen-Fixers by Imaging and Molecular Methods Running Title: Diazotrophs in Tara Oceans
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.17.343731; this version posted April 1, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods Running title: Diazotrophs in Tara Oceans Juan José Pierella Karlusich1,2, Eric Pelletier2,3,, Fabien Lombard2,5,8 , Madeline Carsique1, Etienne Dvorak1, Sébastien Colin4,6,10, Marc Picheral2,5, Francisco M. Cornejo-Castillo4, Silvia G. Acinas7, Rainer Pepperkok2,6, Eric Karsenti1,2,6, Colomban de Vargas2,4, Patrick Wincker2,3, Chris Bowler1,2*, Rachel A Foster 9* 1 Institut de Biologie de l'ENS (IBENS), Département de biologie, École normale supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France 2 CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016 Paris, France 3 Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France 4 Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR 7144, ECOMAP, 29680 Roscoff, France 5 Sorbonne Universités, CNRS, Laboratoire d'Océanographie de Villefranche (LOV), 06230 Villefranche-sur-Mer, France 6 European Molecular Biology Laboratory, Heidelberg, Germany 7 Department of Marine Biology and Oceanography, Institut de Ciènces del -
Redalyc.DENITRIFICATION of WASTEWATER TREATMENT PLANT EFFLUENT USING ANAEROBIC BACTERIAL BED REACTOR IMMERSED: OPERATING PERFO
Journal of Urban and Environmental Engineering E-ISSN: 1982-3932 [email protected] Universidade Federal da Paraíba Brasil Sylla, Aboubacar; Fatima Ezzahra, Aboussabiq; Najwa, Hassou; Rihani, Mohamed; Jamal, Amine; Omar, Assobhei; Samira, Etahiri DENITRIFICATION OF WASTEWATER TREATMENT PLANT EFFLUENT USING ANAEROBIC BACTERIAL BED REACTOR IMMERSED: OPERATING PERFORMANCE Journal of Urban and Environmental Engineering, vol. 11, núm. 2, julio-diciembre, 2017, pp. 208-218 Universidade Federal da Paraíba Paraíba, Brasil Available in: http://www.redalyc.org/articulo.oa?id=283255970009 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Journal of Urban and Environmental Journal of Urban and E Engineering, v.11, n.2, p.208-218 Environmental Engineering ISSN 1982-3932 J www.journal-uee.org E doi: 10.4090/juee.2017.v11n2.208218 U DENITRIFICATION OF WASTEWATER TREATMENT PLANT EFFLUENT USING ANAEROBIC BACTERIAL BED REACTOR IMMERSED: OPERATING PERFORMANCE Aboubacar Sylla*, Aboussabiq Fatima Ezzahra, Hassou Najwa, Mohamed Rihani, Amine Jamal, Assobhei Omar and Etahiri Samira BIOMARE Laboratory, Biology Department, Faculty of Science, University Chouaib Doukkali, P.O. Box 20, El Jadida 2400, Morocco. Received 27 August 2016; received in revised form 02 May 2017; accepted 05 July 2017 Abstract: In this study, a heterotrophic denitrification was designed for domestic wastewater treatment with unexpected water flows at different loading rates. Benefited from excellent removal ability COD, shorten operating time and lower maintenance cost. During the time of operation (six months), injection of nitrate was made in the influent RALBI 1 while the RALBI 2 was fed with sewage without addition of nitrate. -
Carbon–Nitrogen Interactions in Idealized Simulations with JSBACH (Version 3.10)
Geosci. Model Dev., 10, 2009–2030, 2017 www.geosci-model-dev.net/10/2009/2017/ doi:10.5194/gmd-10-2009-2017 © Author(s) 2017. CC Attribution 3.0 License. Carbon–nitrogen interactions in idealized simulations with JSBACH (version 3.10) Daniel S. Goll1,a, Alexander J. Winkler2,3, Thomas Raddatz2, Ning Dong3,5, Ian Colin Prentice4,6, Philippe Ciais1, and Victor Brovkin2 1Le Laboratoire des Sciences du Climat et de l’Environnement, IPSL-LSCE CEA/CNRS/UVSQ Saclay, Gif sur Yvette, France 2Max Planck Institute for Meteorology, Hamburg, Germany 3International Max Planck Research School on Earth System Modeling, Hamburg, Germany 4Department of Biological Sciences, Macquarie University, North Ryde, NSW 2109, Australia 5Faculty of Agriculture and Environment, Department of Environmental Sciences, University of Sydney, NSW 2006, Australia 6AXA Chair in Biosphere and Climate Impacts, Department of Life Sciences, Imperial College London, Silwood Park Campus, Buckhurst Road, Ascot SL5 7PY, UK aformerly at: Max Planck Institute for Meteorology, Hamburg, Germany Correspondence to: Daniel S. Goll ([email protected]) Received: 17 December 2016 – Discussion started: 9 January 2017 Revised: 7 April 2017 – Accepted: 14 April 2017 – Published: 22 May 2017 Abstract. Recent advances in the representation of soil car- The strengths of the land carbon feedbacks of the re- −1 bon decomposition and carbon–nitrogen interactions imple- cent version of JSBACH, with βL D 0:61 Pgppm and γL D mented previously into separate versions of the land sur- −27:5 Pg ◦C−1, are 34 and 53 % less than the averages of face scheme JSBACH are here combined in a single version, CMIP5 models, although the CMIP5 version of JSBACH which is set to be used in the upcoming 6th phase of coupled simulated βL and γL, which are 59 and 42 % higher than model intercomparison project (CMIP6). -
Nitrogen Fixation Among Marine Bacterioplankton
Nitrogen Fixation Among Marine Bacterioplankton Kjärstin H. Boström Department of Biology & Environmental Science University of Kalmar Sweden 2006 AKADEMISK AVHANDLING som för avläggande av Filosofie Doktorsexamen vid Naturvetenskapliga Fakulteten vid högskolan i Kalmar kommer att offentligt försvaras fredagen den 20 januari 2006 Doctoral thesis 2006 University of Kalmar Faculty of Natural Sciences Dissertation series No. 26 Kjärstin H. Boström Department of Biology and Environmental Science University of Kalmar, SE 391 82 Kalmar, Sweden Supervisor: Dr. Lasse Riemann, Assistant Professor Department of Biology and Environmental Science University of Kalmar, SE 391 82 Kalmar, Sweden Opponent: Dr. Grieg Steward, Assistant Professor Department of Oceanography University of Hawaii, Honolulu, HI 96822, USA 2006 Kjärstin H. Boström ISBN: 91-89584-52-X, ISSN: 1650-2779, pp. 1-26 Printed by: Högskolans tryckeri, Kalmar 2 To Frida & Emma 3 TABLE OF CONTENTS TABLE OF CONTENTS.............................................................................................................4 ABSTRACT...................................................................................................................................5 SVENSK SAMMANFATTNING...............................................................................................6 LIST OF PUBLICATIONS.........................................................................................................8 INTRODUCTION ........................................................................................................................9 -
Diversity of Free-Living Nitrogen Fixing Bacteria in the Badlands of South Dakota Bibha Dahal South Dakota State University
South Dakota State University Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange Theses and Dissertations 2016 Diversity of Free-living Nitrogen Fixing Bacteria in the Badlands of South Dakota Bibha Dahal South Dakota State University Follow this and additional works at: http://openprairie.sdstate.edu/etd Part of the Bacteriology Commons, and the Environmental Microbiology and Microbial Ecology Commons Recommended Citation Dahal, Bibha, "Diversity of Free-living Nitrogen Fixing Bacteria in the Badlands of South Dakota" (2016). Theses and Dissertations. 688. http://openprairie.sdstate.edu/etd/688 This Thesis - Open Access is brought to you for free and open access by Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. For more information, please contact [email protected]. DIVERSITY OF FREE-LIVING NITROGEN FIXING BACTERIA IN THE BADLANDS OF SOUTH DAKOTA BY BIBHA DAHAL A thesis submitted in partial fulfillment of the requirements for the Master of Science Major in Biological Sciences Specialization in Microbiology South Dakota State University 2016 iii ACKNOWLEDGEMENTS “Always aim for the moon, even if you miss, you’ll land among the stars”.- W. Clement Stone I would like to express my profuse gratitude and heartfelt appreciation to my advisor Dr. Volker Brӧzel for providing me a rewarding place to foster my career as a scientist. I am thankful for his implicit encouragement, guidance, and support throughout my research. This research would not be successful without his guidance and inspiration. -
Nitrogen Transformations in Wetlands: Effects of Water Flow Patterns
S£ 9807//6 Nitrogen transformations in wetlands: Effects of water flow patterns Department of Ecology Limnology Lund University, Sweden Lund 1997 DISCLAIMER Portions of this document may be illegible electronic image products. Images are produced from the best available original document. Organization Document name LUND UNIVERSITY DOCTORAL DISSERTATION Department ofEcology Limnology Date of Issue November 14. 1997 S-223 62 Lund Sweden SE-LUNBDS/NBLL-97/1032-t-l 14pp Authors) Sponsoring organization Torbjorn Davidsson Title and subtitle Nitrogen transformations in wetlands: Effects of water Bow patterns Abstract In this thesis, 1 have studied nitrogen turnover processes in watermcadows. A watcrmcadow is a wetland where water infiltrates through the soil of a grassland field. It is hypothesized that infiltration of water through the soil matrix promotes nutrient transformations compared to surface flow of water, by increasing the contact between water, nutrients, soil organic matter and bacteria. 1 have studied how the balance between nitrogen removal (denitrification, assimilative uptake, adsorption) and release (mineralization, desorption) processes arc affected by water How characteristics. Mass balance studies and direct denitrification measurements at two field sites showed that, although denitrification was high, net nitrogen removal in the watermcadows was poor. This was dueto release of ammonium and dissolved organic nitrogen (DON) from the soils. In laboratory studies, using ,5 N isotope techniques, I have shown that nitrogen turnover is considerably affected by hydrological conditions and by soil type. Infiltration increased virtually all the nitrogen processes, due to deeper penetration of nitrate and oxygen, and extended zones of turnover processes. On the contrary, soils and sediments with surface waterflow, diffusion is the main transfer mechanism. -
Biogeochemistry of Wetlands Nitrogen
Institute of Food and Agricultural Sciences (IFAS) Biogeochemistry of Wetlands SiScience an dAd App litilications NITROGEN Wetland Biogeochemistry Laboratory Soil and Water Science Department University of Florida Instructor : Patrick Inglett [email protected] 6/22/20086/22/2008 P.W.WBL Inglett1 1 Nitrogen Introduction N Forms, Distribution, Importance Basic processes of N Cycles Examples of current research Examples of applications Key points learned 6/22/2008 P.W. Inglett 2 1 Nitrogen Learning Objectives Identify the forms of N in wetlands Understand the importance of N in wetlands/global processes Define the major N processes/transformations Understand the importance of microbial activity in N transformations Understand the potential regulators of N processes See the application of N cycle principles to understanding natural and man-made ecosystems 6/22/2008 P.W. Inglett 3 Nitrogen Cycling Plant biomass N N2 NH3 N2 N2O (g) Litterfall Nitrogen Fixation Volatilization Mineralization. Water - Nitrification + + NO3 NH4 Organic N NH4 Column AEROBIC - Plant Peat NO3 + + [NH4 ]s uptake accretion [NH4 ]s Denitrification ANAEROBIC Microbial + Organic N Biomass N Adsorbed NH4 N2, N2O (g) 6/22/2008 P.W. Inglett 4 2 Forms of Nitrogen Organic Nitrogen Inorganic Nitrogen + • Proteins • Ammonium (NH4 ) - • Amino Sugars • Nitrate N (NO3 ) - • Nucleic Acids • Nitrite N (NO2 ) • Urea • Nitrous ox ide (N2O) • Dinitrogen (N2) 6/22/2008 P.W. Inglett 5 N Transformations Solid Gaseous Phase: Phase: Particulate N N2 + Bound: NH4 N2O - - NO3 NO2 Aqueous Phase: + NH4 DON - DIN NO3 - Particulate N NO2 6/22/2008 P.W. Inglett 6 3 Reservoirs of Nitrogen Lithosphere 163,600 x 1018 g Atmosphere 3,860 x 1018 g Hydrosphere 23 x 1018 g Biosphere 0.28 x 1018 g 6/22/2008 P.W.