Chapter 8 NITROGEN-FIXING TREES with ACTINORHIZA IN
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Host-Secreted Antimicrobial Peptide Enforces Symbiotic Selectivity in Medicago Truncatula
Host-secreted antimicrobial peptide enforces symbiotic selectivity in Medicago truncatula Qi Wanga, Shengming Yanga, Jinge Liua, Kata Terecskeib, Edit Ábrahámb, Anikó Gombárc, Ágota Domonkosc, Attila Szucs} b, Péter Körmöczib, Ting Wangb, Lili Fodorc, Linyong Maod,e, Zhangjun Feid,e, Éva Kondorosib,1, Péter Kalóc, Attila Keresztb, and Hongyan Zhua,1 aDepartment of Plant and Soil Sciences, University of Kentucky, Lexington, KY 40546; bInstitute of Biochemistry, Biological Research Center, Szeged 6726, Hungary; cNational Agricultural Research and Innovation Centre, Agricultural Biotechnology Institute, Gödöllo} 2100, Hungary; dBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853; and eU.S. Department of Agriculture–Agricultural Research Service Robert W. Holley Center for Agriculture and Health, Cornell University, Ithaca, NY 14853 Contributed by Éva Kondorosi, February 14, 2017 (sent for review January 17, 2017; reviewed by Rebecca Dickstein and Julia Frugoli) Legumes engage in root nodule symbioses with nitrogen-fixing effectors or microbe-associated molecular patterns (MAMPs) soil bacteria known as rhizobia. In nodule cells, bacteria are enclosed such as surface polysaccharides to facilitate their invasion of the in membrane-bound vesicles called symbiosomes and differentiate host (7, 8). Therefore, effector- or MAMP-triggered plant im- into bacteroids that are capable of converting atmospheric nitrogen munity mediated by intracellular nucleotide binding/leucine-rich into ammonia. Bacteroid differentiation -
Nodulation and Growth of Shepherdia × Utahensis ‘Torrey’
Utah State University DigitalCommons@USU All Graduate Theses and Dissertations Graduate Studies 12-2020 Nodulation and Growth of Shepherdia × utahensis ‘Torrey’ Ji-Jhong Chen Utah State University Follow this and additional works at: https://digitalcommons.usu.edu/etd Part of the Plant Sciences Commons Recommended Citation Chen, Ji-Jhong, "Nodulation and Growth of Shepherdia × utahensis ‘Torrey’" (2020). All Graduate Theses and Dissertations. 7946. https://digitalcommons.usu.edu/etd/7946 This Thesis is brought to you for free and open access by the Graduate Studies at DigitalCommons@USU. It has been accepted for inclusion in All Graduate Theses and Dissertations by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. NODULATION AND GROWTH OF SHEPHERDIA ×UTAHENSIS ‘TORREY’ By Ji-Jhong Chen A thesis submitted in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE in Plant Science Approved: ______________________ ____________________ Youping Sun, Ph.D. Larry Rupp, Ph.D. Major Professor Committee Member ______________________ ____________________ Jeanette Norton, Ph.D. Heidi Kratsch, Ph.D. Committee Member Committee Member _______________________________________ Richard Cutler, Ph.D. Interim Vice Provost of Graduate Studies UTAH STATE UNIVERSITY Logan, Utah 2020 ii Copyright © Ji-Jhong Chen 2020 All Rights Reserved iii ABSTRACT Nodulation and Growth of Shepherdia × utahensis ‘Torrey’ by Ji-Jhong Chen, Master of Science Utah State University, 2020 Major Professor: Dr. Youping Sun Department: Plants, Soils, and Climate Shepherdia × utahensis ‘Torrey’ (hybrid buffaloberry) (Elaegnaceae) is presumable an actinorhizal plant that can form nodules with actinobacteria, Frankia (a genus of nitrogen-fixing bacteria), to fix atmospheric nitrogen. However, high environmental nitrogen content inhibits nodule development and growth. -
Human Alteration of the Global Nitrogen Cycle
What is Nitrogen? Human Alteration of the Nitrogen is the most abundant element in Global Nitrogen Cycle the Earth’s atmosphere. Nitrogen makes up 78% of the troposphere. Nitrogen cannot be absorbed directly by the plants and animals until it is converted into compounds they can use. This process is called the Nitrogen Cycle. Heather McGraw, Mandy Williams, Suzanne Heinzel, and Cristen Whorl, Give SIUE Permission to Put Our Presentation on E-reserve at Lovejoy Library. The Nitrogen Cycle How does the nitrogen cycle work? Step 1- Nitrogen Fixation- Special bacteria convert the nitrogen gas (N2 ) to ammonia (NH3) which the plants can use. Step 2- Nitrification- Nitrification is the process which converts the ammonia into nitrite ions which the plants can take in as nutrients. Step 3- Ammonification- After all of the living organisms have used the nitrogen, decomposer bacteria convert the nitrogen-rich waste compounds into simpler ones. Step 4- Denitrification- Denitrification is the final step in which other bacteria convert the simple nitrogen compounds back into nitrogen gas (N2 ), which is then released back into the atmosphere to begin the cycle again. How does human intervention affect the nitrogen cycle? Nitric Oxide (NO) is released into the atmosphere when any type of fuel is burned. This includes byproducts of internal combustion engines. Production and Use of Nitrous Oxide (N2O) is released into the atmosphere through Nitrogen Fertilizers bacteria in livestock waste and commercial fertilizers applied to the soil. Removing nitrogen from the Earth’s crust and soil when we mine nitrogen-rich mineral deposits. Discharge of municipal sewage adds nitrogen compounds to aquatic ecosystems which disrupts the ecosystem and kills fish. -
Enhancement of Infection and Nodulation in Actinorhizal Plants by Inoculation with Frank/A-Amended Superabsorbent Polymers 1
ENHANCEMENT OF INFECTION AND NODULATION IN ACTINORHIZAL PLANTS BY INOCULATION WITH FRANK/A-AMENDED SUPERABSORBENT POLYMERS 1 by 2 Steven J. Kohls , Douglas F. Harbrecht', and Douglas A. Kremer' Abstract. Actinorhizal plants (non-leguminous nitrogen fixing tree species) are unique in forming a symbiosis with the actinomycete Frankia. They are economically and ecologically important due to their ability to colonize disturbed and nutrient-impoverished substrates. The degree of infection and nodulation in Alnus glutinosa and Casuarina equisetifolia were evaluated using a root dip consisting of a superabsorbent polymer slurry amended with various concentrations of Frankia. This delivery system markedly improved the degree of nodulation and growth of Alnus and Casuarina in both laboratory and field studies. Significantly greater nodulation and rate of growth were observed in plants treated with Frankia-polymer slurries compared to plants inoculated with the same amount of Frankia by standard techniques. Nodule number and nodule dry weight per plant were also observed to be two to three times greater in the polymer-Frankia treated plants. Unlike the plants treated with Frankia alone, nodules in the polymer-Frankia treated plants were distributed throughout the root system. When amended with polymer, plants inoculated with 5 to JO-fold lower titers of Frankia exhibited nodulation and growth equal to or greater than that of plants inoculated at standard titer by the standard methods. The mechanism of infection and nodulation enhancement appears to be related to the ability of the polymer delivery system to maintain the microorganisms in close contact with the rhizoplane of the developing root system. This is believed to be the first Frankia inoculum delivery system that enhances the nodulation of actinorhizal plants and also enables adequate nodulation with a 5 to JO-fold smaller inoculum. -
Global Distribution Patterns of Marine Nitrogen-Fixers by Imaging and Molecular Methods Running Title: Diazotrophs in Tara Oceans
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.17.343731; this version posted April 1, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods Running title: Diazotrophs in Tara Oceans Juan José Pierella Karlusich1,2, Eric Pelletier2,3,, Fabien Lombard2,5,8 , Madeline Carsique1, Etienne Dvorak1, Sébastien Colin4,6,10, Marc Picheral2,5, Francisco M. Cornejo-Castillo4, Silvia G. Acinas7, Rainer Pepperkok2,6, Eric Karsenti1,2,6, Colomban de Vargas2,4, Patrick Wincker2,3, Chris Bowler1,2*, Rachel A Foster 9* 1 Institut de Biologie de l'ENS (IBENS), Département de biologie, École normale supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France 2 CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016 Paris, France 3 Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France 4 Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR 7144, ECOMAP, 29680 Roscoff, France 5 Sorbonne Universités, CNRS, Laboratoire d'Océanographie de Villefranche (LOV), 06230 Villefranche-sur-Mer, France 6 European Molecular Biology Laboratory, Heidelberg, Germany 7 Department of Marine Biology and Oceanography, Institut de Ciènces del -
Nitrogen Fixation Among Marine Bacterioplankton
Nitrogen Fixation Among Marine Bacterioplankton Kjärstin H. Boström Department of Biology & Environmental Science University of Kalmar Sweden 2006 AKADEMISK AVHANDLING som för avläggande av Filosofie Doktorsexamen vid Naturvetenskapliga Fakulteten vid högskolan i Kalmar kommer att offentligt försvaras fredagen den 20 januari 2006 Doctoral thesis 2006 University of Kalmar Faculty of Natural Sciences Dissertation series No. 26 Kjärstin H. Boström Department of Biology and Environmental Science University of Kalmar, SE 391 82 Kalmar, Sweden Supervisor: Dr. Lasse Riemann, Assistant Professor Department of Biology and Environmental Science University of Kalmar, SE 391 82 Kalmar, Sweden Opponent: Dr. Grieg Steward, Assistant Professor Department of Oceanography University of Hawaii, Honolulu, HI 96822, USA 2006 Kjärstin H. Boström ISBN: 91-89584-52-X, ISSN: 1650-2779, pp. 1-26 Printed by: Högskolans tryckeri, Kalmar 2 To Frida & Emma 3 TABLE OF CONTENTS TABLE OF CONTENTS.............................................................................................................4 ABSTRACT...................................................................................................................................5 SVENSK SAMMANFATTNING...............................................................................................6 LIST OF PUBLICATIONS.........................................................................................................8 INTRODUCTION ........................................................................................................................9 -
Diversity of Free-Living Nitrogen Fixing Bacteria in the Badlands of South Dakota Bibha Dahal South Dakota State University
South Dakota State University Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange Theses and Dissertations 2016 Diversity of Free-living Nitrogen Fixing Bacteria in the Badlands of South Dakota Bibha Dahal South Dakota State University Follow this and additional works at: http://openprairie.sdstate.edu/etd Part of the Bacteriology Commons, and the Environmental Microbiology and Microbial Ecology Commons Recommended Citation Dahal, Bibha, "Diversity of Free-living Nitrogen Fixing Bacteria in the Badlands of South Dakota" (2016). Theses and Dissertations. 688. http://openprairie.sdstate.edu/etd/688 This Thesis - Open Access is brought to you for free and open access by Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of Open PRAIRIE: Open Public Research Access Institutional Repository and Information Exchange. For more information, please contact [email protected]. DIVERSITY OF FREE-LIVING NITROGEN FIXING BACTERIA IN THE BADLANDS OF SOUTH DAKOTA BY BIBHA DAHAL A thesis submitted in partial fulfillment of the requirements for the Master of Science Major in Biological Sciences Specialization in Microbiology South Dakota State University 2016 iii ACKNOWLEDGEMENTS “Always aim for the moon, even if you miss, you’ll land among the stars”.- W. Clement Stone I would like to express my profuse gratitude and heartfelt appreciation to my advisor Dr. Volker Brӧzel for providing me a rewarding place to foster my career as a scientist. I am thankful for his implicit encouragement, guidance, and support throughout my research. This research would not be successful without his guidance and inspiration. -
Glossary and Acronyms Glossary Glossary
Glossary andChapter Acronyms 1 ©Kevin Fleming ©Kevin Horseshoe crab eggs Glossary and Acronyms Glossary Glossary 40% Migratory Bird “If a refuge, or portion thereof, has been designated, acquired, reserved, or set Hunting Rule: apart as an inviolate sanctuary, we may only allow hunting of migratory game birds on no more than 40 percent of that refuge, or portion, at any one time unless we find that taking of any such species in more than 40 percent of such area would be beneficial to the species (16 U.S.C. 668dd(d)(1)(A), National Wildlife Refuge System Administration Act; 16 U.S.C. 703-712, Migratory Bird Treaty Act; and 16 U.S.C. 715a-715r, Migratory Bird Conservation Act). Abiotic: Not biotic; often referring to the nonliving components of the ecosystem such as water, rocks, and mineral soil. Access: Reasonable availability of and opportunity to participate in quality wildlife- dependent recreation. Accessibility: The state or quality of being easily approached or entered, particularly as it relates to complying with the Americans with Disabilities Act. Accessible facilities: Structures accessible for most people with disabilities without assistance; facilities that meet Uniform Federal Accessibility Standards; Americans with Disabilities Act-accessible. [E.g., parking lots, trails, pathways, ramps, picnic and camping areas, restrooms, boating facilities (docks, piers, gangways), fishing facilities, playgrounds, amphitheaters, exhibits, audiovisual programs, and wayside sites.] Acetylcholinesterase: An enzyme that breaks down the neurotransmitter acetycholine to choline and acetate. Acetylcholinesterase is secreted by nerve cells at synapses and by muscle cells at neuromuscular junctions. Organophosphorus insecticides act as anti- acetyl cholinesterases by inhibiting the action of cholinesterase thereby causing neurological damage in organisms. -
Nitrogenase; Nitrogen Fixation Vs Haber-Bosch Process
Nitrogenase; Nitrogen Fixation vs Haber-Bosch Process Anna Balinski, Jacob Watson Texas A&M University, College Station, TX 77843 Abstract Comparison of Processes Haber-Bosch Process Overview:The Nitrogen Cycle is a chemical cycle which recycles nitrogen into usable forms, such as ammonium, nitrates, and nitrites. Nitrogen and nitrogen compounds are important Haber-Bosch Reaction because they make up our atmosphere as well as our earthly environments. Nitrogen can be recycled into ammonium naturally via nitrogen fixing bacteria, or synthetically using the + - Discovered by Fritz Haber, process scaled up by Haber-Bosch process. Nitrogen fixation in bacteria follows the reaction N2 + 8 H + 8 e 2 • Carl Bosch NH3 + H2 and is powered by the hydrolysis of 16 ATP equivalents. The Haber-Bosch process Response to Germany’s need for ammonia for follows the reaction scheme of N2 + 3 H2 2 NH3 and is powered by using high pressures, • temperatures, and catalysts. Using the Haber-Bosch process an optimum yield of 97% explosive during WWI ammonium can be obtained. These reactions both use diatomic nitrogen as well as Nitrogen Fixation Reaction • Prolonged WWI when Germany was able to hydrogen, but differ in their final products as bacterial nitrogen fixation releases hydrogen produce fertilizer and explosives gas as a byproduct. Bacteria in the soil use nitrogen to create energy to grow and reproduce Fritz Haber Carl Bosch as well as to introduce nitrogen for use by other species. The Haber-Bosch process produces ammonium which can be used for a range of activities such as the production of fertilizers, or even explosives. -
Overview and Case Studies on Biological Nitrogen Fixation: Perspectives and Limitations
Case Study B2: Overview and Case studies on Biological Nitrogen Fixation: Perspectives and Limitations Adriana Montañez1 Problem statement: Biological Nitrogen Fixation and Sustainable Agriculture Nitrogen is an essential plant nutrient. It is the nutrient that is most commonly deficient in soils, contributing to reduced agricultural yields throughout the world. Nitrogen can be supplied to crops by biological nitrogen fixation (BNF), a process which is becoming more important for not only reducing energy costs, but also in seeking more sustainable agricultural production. Nitrogen fixing micro-organisms could therefore be an important component of sustainable agricultural systems. There are several significant reasons to seek alternatives to fertilisers that provide chemically fixed nitrogen: Ø Environmental Nitrogen fertilisers affect the balance of the global nitrogen cycle, and may pollute groundwater, increase the risk of chemical spills, and increase atmospheric nitrous oxide (N2O), a potent “greenhouse” gas. Ø Energy The primary energy source for the manufacture of nitrogen fertiliser is natural gas together with petroleum and coal. On the contrary, the energy requirements of BNF are met by renewable sources such as plant-synthesised carbohydrates rather than from non- renewable fossil fuels. Ø Sustainability Long- term sustainability of agricultural systems must rely on the use and effective management of internal resources. The process of BNF offers an economically attractive and ecologically sound means of reducing external nitrogen input and improving the quality and quantity of internal resources. Ø Nutrition It is estimated that about 20% of food protein worldwide is derived from legumes. There are more than 13,000 described species of legumes and for only 3,000 species examined more than 90% were found to form root nodules. -
The Significance of Flavonoids in the Process of Biological Nitrogen
International Journal of Molecular Sciences Review The Significance of Flavonoids in the Process of Biological Nitrogen Fixation Wei Dong and Yuguang Song * School of Life Science, Qufu Normal University, Qufu 273165, China; [email protected] * Correspondence: [email protected] Received: 9 July 2020; Accepted: 14 August 2020; Published: 18 August 2020 Abstract: Nitrogen is essential for the growth of plants. The ability of some plant species to obtain all or part of their requirement for nitrogen by interacting with microbial symbionts has conferred a major competitive advantage over those plants unable to do so. The function of certain flavonoids (a group of secondary metabolites produced by the plant phenylpropanoid pathway) within the process of biological nitrogen fixation carried out by Rhizobium spp. has been thoroughly researched. However, their significance to biological nitrogen fixation carried out during the actinorhizal and arbuscular mycorrhiza–Rhizobium–legume interaction remains unclear. This review catalogs and contextualizes the role of flavonoids in the three major types of root endosymbiosis responsible for biological nitrogen fixation. The importance of gaining an understanding of the molecular basis of endosymbiosis signaling, as well as the potential of and challenges facing modifying flavonoids either quantitatively and/or qualitatively are discussed, along with proposed strategies for both optimizing the process of nodulation and widening the plant species base, which can support nodulation. Keywords: flavonoids; biological nitrogen fixation; endosymbiosis; nodulation; actinorhiza; arbuscular mycorrhiza 1. Introduction The flavonoids form a large group of plant secondary metabolites synthesized by the phenylpropanoid pathway: over 9000 distinct compounds have been characterized to date [1]. The major recognized subgroups are the chalcones, flavones, flavonols, anthocyanins, proanthocyanidins and aurones [2] (Figure1). -
Interactions Among Soil Biology, Nutrition, and Performance of Actinorhizal Plant Species in the H.J
'I 'l I Applied Soil Ecology ELSEVIER Applied Soil Ecology 19 (2002) 13-26 www.elsevier com/Iocate/apsoll Interactions among soil biology, nutrition, and performance of actinorhizal plant species in the H.J. Andrews Experimental Forest of Oregon N.S. Rojas a, D.A. Perry b, C.Y. Li c'*, L.M. Ganio d a 118 Trail East St, Hendersonvtlle, TN37075, USA b Box 8, Papa 'au, HI 96755, USA c USDA Forest Service, PacificNorthwest Research Station, Forestry. Sciences Laboratory, 3200 SW Jefferson Way, Corvallis, 0R97331, USA d Department of Forest Science, Oregon State Umversit3 Corvalhs, OR 97331, USA Received 2 July 2001 ; accepted 7 August 2091 Abstract The study examined the effect ofFrankia, macronutrients, micronutrients, mycorrhizal fungi, and plant-growth-promoting fluorescent Pseudomonas sp. on total biomass, nodule weight, and nitrogen fixation of red aider (Alnus rubra) and snowbrush (Ceanothus velutinus) under greenhouse conditions. The soil samples were collected from a 10-year-old clearcut on the H.J. Andrews Experimental Forest, Oregon. Within the clearcut, four sampling points were selected along a slope gradient. Red alder and snowbrush plants were greenhouse-grown in a mix of sod-vermiculite-perlite (2:1:1) for 6 and 12 months, respectively. Plants were inoculated with Frankia and a fluorescent Pseudomonas sp. Some of the red alder were also inoculated with ectomycorrhlzal Alpova diplophloeus, and some snowbrush with endomycorrhizal Glomus intraradix. There was no interaction between treatment and slope location for either species. There were significant treatment effects for red alder, but not for snowbmsh. Red alder seedlings given Frankia and macronutrients produced more biomass and had greater nitrogen fixation than seedlings grown without addtttons; adding A.