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Introduction to Unix (PDF)
Introduction to… UNIX Bob Booth December 2004 AP-UNIX2 © University of Sheffield Contents 1. INTRODUCTION....................................................................................................................................... 3 1.1 THE SHELL ........................................................................................................................................... 3 1.2 FORMAT OF COMMANDS ...................................................................................................................... 4 1.3 ENTERING COMMANDS ......................................................................................................................... 4 2. ACCESSING UNIX MACHINES ............................................................................................................. 5 2.1 TERMINAL EMULATION SOFTWARE...................................................................................................... 5 2.2 LOGGING IN.......................................................................................................................................... 6 2.3 LOGGING OUT ...................................................................................................................................... 6 2.4 CHANGING YOUR PASSWORD............................................................................................................... 8 3. BASIC UNIX COMMANDS...................................................................................................................... 9 3.1 FILENAMES.......................................................................................................................................... -
UNIX Text Processing Tools—Programs for Sorting, Compar- Ing, and in Various Ways Examining the Contents of Text Files
UNIX® TEXT PROCESSING DALE DOUGHERTY AND TIM O’REILLY and the staffofO’Reilly & Associates, Inc. CONSULTING EDITORS: Stephen G. Kochan and PatrickH.Wood HAYDEN BOOKS ADivision of HowardW.Sams & Company 4300 West 62nd Street Indianapolis, Indiana 46268 USA Copyright © 1987 Dale Dougherty and Tim O’Reilly FIRST EDITION SECOND PRINTING — 1988 INTERNET "UTP Revival" RELEASE — 2004 The UTP RevivalRelease is distributed according to the terms of the Creative Commons Attribution License. A copyofthe license is available at http://creativecommons.org/licenses/by/1.0 International Standard Book Number: 0-672-46291-5 Library of Congress Catalog Card Number: 87-60537 Trademark Acknowledgements All terms mentioned in this book that are known to be trademarks or service marks are listed below. Nei- ther the authors nor the UTP Revivalmembers can attest to the accuracyofthis information. Use of a term in this book should not be regarded as affecting the validity of anytrademark or service mark. Apple is a registered trademark and Apple LaserWriter is a trademark of Apple Computer,Inc. devps is a trademark of Pipeline Associates, Inc. Merge/286 and Merge/386 are trademarks of Locus Computing Corp. DDL is a trademark of Imagen Corp. Helvetica and Times Roman are registered trademarks of Allied Corp. IBM is a registered trademark of International Business Machines Corp. Interpress is a trademark of Xerox Corp. LaserJet is a trademark of Hewlett-Packard Corp. Linotronic is a trademark of Allied Corp. Macintosh is a trademark licensed to Apple Computer,Inc. Microsoft is a registered trademark of Microsoft Corp. MKS Toolkit is a trademark of Mortice Kern Systems, Inc. -
Knowledge Management Enviroments for High Throughput Biology
Knowledge Management Enviroments for High Throughput Biology Abhey Shah A Thesis submitted for the degree of MPhil Biology Department University of York September 2007 Abstract With the growing complexity and scale of data sets in computational biology and chemoin- formatics, there is a need for novel knowledge processing tools and platforms. This thesis describes a newly developed knowledge processing platform that is different in its emphasis on architecture, flexibility, builtin facilities for datamining and easy cross platform usage. There exist thousands of bioinformatics and chemoinformatics databases, that are stored in many different forms with different access methods, this is a reflection of the range of data structures that make up complex biological and chemical data. Starting from a theoretical ba- sis, FCA (Formal Concept Analysis) an applied branch of lattice theory, is used in this thesis to develop a file system that automatically structures itself by it’s contents. The procedure of extracting concepts from data sets is examined. The system also finds appropriate labels for the discovered concepts by extracting data from ontological databases. A novel method for scaling non-binary data for use with the system is developed. Finally the future of integrative systems biology is discussed in the context of efficiently closed causal systems. Contents 1 Motivations and goals of the thesis 11 1.1 Conceptual frameworks . 11 1.2 Biological foundations . 12 1.2.1 Gene expression data . 13 1.2.2 Ontology . 14 1.3 Knowledge based computational environments . 15 1.3.1 Interfaces . 16 1.3.2 Databases and the character of biological data . -
Computerized Patient Record System (CPRS) Setup Guide
Computerized Patient Record System (CPRS) Setup Guide June 2021 Department of Veterans Affairs Health Data Systems Computerized Patient Record System Product Line Revision History Project Technical Date Patch Page Change Manager Writer 6/17/2021 OR*3*0*547 30 Added row to GUI Parameters SHRPE SHRPE Menu Options for OTH: GUI Add/Edit Local Message for OTH Button. Added Subsection for GUI 37-38 Add/Edit Local Message for OTH Button 10/16/2019 OR*3.0*397 All Added Revision dated REDACTED REDACTED 3/25/2019 (see below). Checked for 508 Compliance. Removed extra space between some pages. Removed extra Table of Contents from Pharmacy Packages section (G). 07/31/2019 OR*3.0*510 88 Added two NOTE: REDACTED REDACTED 3/25/2019 OR*3.0*397 21 Added ORSUPPLY Key REDACTED REDACTED 08/20/2018 XU*8.0*679 28 Added note regarding Electronic REDACTED REDACTED Signature Block restrictions. 03/30/2011 OR*3.0*272 5, 77, Changed references from REDACTED REDACTED 79, Duplicate Drug Class to 81, Duplicate Drug Therapy. 82, 93, 01/25/2007 OR*3.0*245 123 – Added information about the REDACTED REDACTED 125 new option, ORCM QUICK ORDERS BY USER 11/27/06 OR*3.0*242 182 Added information about the REDACTED REDACTED new way to edit items for the Nature of Order file. 12/30/04 36 Added new information about REDACTED REDACTED document templates. Computerized Patient Record System (CPRS) ii June 2021 Setup Guide Project Technical Date Patch Page Change Manager Writer 10/14/98 138 Added information about ORMTIME 10/15/98 14 Added explanation of global journaling 10/20/98 -
Acme As an Interactive Translation Environment
Acme as an Interactive Translation Environment Eric Nichols and Yuji Matsumoto {eric-n,matsu} ߞatߞ is.naist.jp Computational Linguistics Laboratory Nara Institute of Science and Technology ABSTRACT Translation is challenging and repetitive work. Computer-aided transla tion environments attempt to ease the monotony by automating many tasks for human translators, however, it is difficult to design user inter faces that are easy to use but that can also be adapted to a dynamic workflow. This is often a result of a lack of connection between the inter face and the tasks that the user wants to carry out. A better correspon dence between task and interface can be achieved by simplifying how software tools are named. One way of accomplishing this to embrace text as the interface. By providing a simple and consistent semantics for interpreting text as commands, the Acme text editor [1] makes it possible to build a system with a text-centered interface. In this paper we explore the implications this has for translation aid software. 1. Motivation Translation is an essential and important part of human communication. However, it is a very challenging task, requiring the translator to have a complete understanding of and a deep familiarity with the source and target languages. This difficulty is not eased by the fact that fundamentally it is an inherently repetitive task, consisting of looking up unfamiliar words and doing large amounts of editing to produce a good translation. Given these demands, computers provide a good way to ease this repetitiveness by automating lookup and editing; by converting resources like dictionaries, other transla tions, and collections of example sentences to a computer-readable format, lookups can be performed much faster. -
Header Manipulation Rules Resource Guide
Oracle® Communications Session Border Controller Header Manipulation Rules Resource Guide Release S-CZ8.0 September 2017 Oracle Communications Session Border Controller Header Manipulation Rules Resource Guide, Release S-CZ8.0 Copyright © 2014, 2017, Oracle and/or its affiliates. All rights reserved. This software and related documentation are provided under a license agreement containing restrictions on use and disclosure and are protected by intellectual property laws. Except as expressly permitted in your license agreement or allowed by law, you may not use, copy, reproduce, translate, broadcast, modify, license, transmit, distribute, exhibit, perform, publish, or display any part, in any form, or by any means. Reverse engineering, disassembly, or decompilation of this software, unless required by law for interoperability, is prohibited. The information contained herein is subject to change without notice and is not warranted to be error-free. If you find any errors, please report them to us in writing. If this is software or related documentation that is delivered to the U.S. Government or anyone licensing it on behalf of the U.S. Government, then the following notice is applicable: U.S. GOVERNMENT END USERS: Oracle programs, including any operating system, integrated software, any programs installed on the hardware, and/or documentation, delivered to U.S. Government end users are "commercial computer software" pursuant to the applicable Federal Acquisition Regulation and agency-specific supplemental regulations. As such, use, duplication, disclosure, modification, and adaptation of the programs, including any operating system, integrated software, any programs installed on the hardware, and/or documentation, shall be subject to license terms and license restrictions applicable to the programs. -
Protected Database Configuration Guide
Zero Data Loss Recovery Appliance Protected Database Configuration Guide Release 12.2 E88069-06 January 2019 Zero Data Loss Recovery Appliance Protected Database Configuration Guide, Release 12.2 E88069-06 Copyright © 2014, 2019, Oracle and/or its affiliates. All rights reserved. Contributing Authors: Glenn Maxey, Terence Buencamino, Padmaja Potineni Contributors: Andrew Babb, Anand Beldalker, Jin-Jwei Chen, Tim Chien, Sean Connelly, Donna Cooksey, Sam Corso, Steve Fogel, Muthu Olagappan, Jony Safi, Daniel Sears, Lawrence To, Steve Wertheimer This software and related documentation are provided under a license agreement containing restrictions on use and disclosure and are protected by intellectual property laws. Except as expressly permitted in your license agreement or allowed by law, you may not use, copy, reproduce, translate, broadcast, modify, license, transmit, distribute, exhibit, perform, publish, or display any part, in any form, or by any means. Reverse engineering, disassembly, or decompilation of this software, unless required by law for interoperability, is prohibited. The information contained herein is subject to change without notice and is not warranted to be error-free. If you find any errors, please report them to us in writing. If this is software or related documentation that is delivered to the U.S. Government or anyone licensing it on behalf of the U.S. Government, then the following notice is applicable: U.S. GOVERNMENT END USERS: Oracle programs, including any operating system, integrated software, any programs installed on the hardware, and/or documentation, delivered to U.S. Government end users are "commercial computer software" pursuant to the applicable Federal Acquisition Regulation and agency- specific supplemental regulations. -
Oracle CSM-SBC with Broadworks.Pdf
Oracle Communications Core Session Manager SCZ 7.1.5m1p1 and Oracle Communications Session Border Controller SCZ 7.2.0 with Broadworks Platform R19SP1 Technical Application Note Disclaimer The following is intended to outline our general product direction. It is intended for information purposes only, and may not be incorporated into any contract. It is not a commitment to deliver any material, code, or functionality, and should not be relied upon in making purchasing decisions. The development, release, and timing of any features or functionality described for Oracle’s products remains at the sole discretion of Oracle. 2 Table of Contents INTENDED AUDIENCE ...................................................................................................................................................... 5 DOCUMENT OVERVIEW .................................................................................................................................................. 5 INTRODUCTION ................................................................................................................................................................. 6 AUDIENCE ............................................................................................................................................................................................. 6 REQUIREMENTS ................................................................................................................................................................................... 6 ARCHITECTURE -
Table of Contents 1
Table Of Contents 1. Zoo Information a. Logging in b. Transferring files 2. Unix Basics 3. Homework Commands G etting onto the Zoo Type “ssh <netid>@node.zoo.cs.yale.edu”, and enter your netID password when prompted. Your password won’t show up and the cursor won’t move, but it knows what you’re typing. G etting Files onto the Zoo Use the “scp” command to transfer files onto the Zoo. Type “scp filename1 filename2 <netid>@node.zoo.cs.yale.edu:~/mydirectory/mysubdirectory” You should be on your local machine in the same directory as the two files. This will copy the two local files, filename1 and filename2 into the directory mysubdirectory (which is located inside mydirectory in your home directory on the Zoo). You will be prompted to enter your netID password, just like when you ssh in. U nix Basics What is a directory? A directory is simply a folder, which can contain any mixture of files and subdirectories. What is different about a file versus a directory? A directory contains other files and directories, but does not contain information itself -- for example, you can’t use emacs to view a directory. However, you can often use a text editor to view the contents of a file. Sometimes directories and files have different colors when you look at what’s in your current directory, depending on your terminal settings, which can help you tell which is which. What about an executable? An executable is a special type of file that can be run by your computer. -
Lifetime Support Policy: Oracle and Sun Systems Software
Oracle and Sun System Software and Operating Systems Oracle Lifetime Support Policy September 21, 2021, 2021 | Version 1.00 Copyright © 2021, Oracle and/or its affiliates TABLE OF CONTENTS This brochure provides lifecycle timeframes for system software that is typically sold Additional Sun software is located in the standalone, but used in conjunction with specific Oracle or Sun products. Product Oracle Fusion Middleware, Oracle areas include server and storage management, Sun third-party, communication and Technology and Oracle Applications collaboration and Sun Ray. Lifetime Support Policy brochures located on www.oracle.com. ORACLE LIFETIME SUPPORT: 2 Please see the Oracle Software Oracle Communications Session Border Controller (Formerly Acme Packet Net-Net) 5 Technical Support Policies document Oracle Communications Tunneled Session Controller (Formerly Acme Packet NetNet) 5 located on www.oracle.com for Oracle Communications Application Session Controller (Formerly Acme Packet Net-Net) 5 additional terms and descriptions. Oracle Communications Unified Session Manager (Formerly Acme Packet Net-Net) 6 Oracle Communications Subscriber Aware Load Balancer (Formerly Acme Packet Net-Net) 6 Oracle Communications Border Gateway (Formerly Acme Packet Net-Net Border Gateway) 6 Oracle Communications Core Session Manager 7 Oracle Communications Session Router (Formerly Acme Packet Net-Net Session Router) 7 Oracle Communications Security Gateway (Formerly Acme Packet Net-Net Security Gateway) 7 Oracle Communications Session Monitor Family of -
Acme: a User Interface for Programmers Rob Pike AT&T Bell Laboratories Murray Hill, New Jersey 07974
Acme: A User Interface for Programmers Rob Pike AT&T Bell Laboratories Murray Hill, New Jersey 07974 ABSTRACT A hybrid of window system, shell, and editor, Acme gives text-oriented applications a clean, expressive, and consistent style of interaction. Traditional window systems support inter- active client programs and offer libraries of pre-defined operations such as pop-up menus and buttons to promote a consistent user interface among the clients. Acme instead provides its clients with a fixed user interface and simple conventions to encourage its uniform use. Clients access the facilities of Acme through a file system interface; Acme is in part a file server that exports device-like files that may be manipulated to access and control the contents of its win- dows. Written in a concurrent programming language, Acme is structured as a set of communi- cating processes that neatly subdivide the various aspects of its tasks: display management, input, file server, and so on. Acme attaches distinct functions to the three mouse buttons: the left selects text; the mid- dle executes textual commands; and the right combines context search and file opening functions to integrate the various applications and files in the system. Acme works well enough to have developed a community that uses it exclusively. Although Acme discourages the traditional style of interaction based on typescript windows— teletypes—its users find Acme’s other services render typescripts obsolete. History and motivation The usual typescript style of interaction with Unix and its relatives is an old one. The typescript—an inter- mingling of textual commands and their output—originates with the scrolls of paper on teletypes. -
Operational Guidance Document.Pdf
Operational Guidance for the Community Multiscale Air Quality (CMAQ) Modeling System Version 4.7.1 (June 2010 Release) Prepared in cooperation with the Community Modeling and Analysis System Institute for the Environment University of North Carolina at Chapel Hill Chapel Hill, NC 27599 CMAQv4.7.1 Operational Guidance Document Operational Guidance for the Community Multiscale Air Quality (CMAQ) Modeling System June 2010 ii http://www.cmaq-model.org CMAQv4.7.1 Operational Guidance Document Disclaimer The information in this document has been funded wholly or in part by the United States Environmental Protection Agency. The draft version of this document has not been subjected to the Agency’s peer and administrative review, nor has it been approved for publication as an EPA document. The draft document has been subjected to review by the Community Modeling and Analysis System Center only; this content has not yet been approved by the EPA. Mention of trade names or commercial products does not constitute endorsement or recommendation for use. June 2010 iii http://www.cmaq-model.org CMAQv4.7.1 Operational Guidance Document Foreword The Community Multiscale Air Quality (CMAQ) modeling system is being developed and maintained under the leadership of the Atmospheric Modeling and Analysis Division of the EPA National Exposure Research Laboratory in Research Triangle Park, NC. CMAQ represents over two decades of research in atmospheric modeling and has been in active development since the early 1990’s. The first release of CMAQ was made available in 1998 without charge for use by air quality scientists, policy makers, and stakeholder groups to address multiscale, multipollutant air quality concerns.