Making a Cladogram Worksheet
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Phylogenetic Trees and Cladograms Are Graphical Representations (Models) of Evolutionary History That Can Be Tested
AP Biology Lab/Cladograms and Phylogenetic Trees Name _______________________________ Relationship to the AP Biology Curriculum Framework Big Idea 1: The process of evolution drives the diversity and unity of life. Essential knowledge 1.B.2: Phylogenetic trees and cladograms are graphical representations (models) of evolutionary history that can be tested. Learning Objectives: LO 1.17 The student is able to pose scientific questions about a group of organisms whose relatedness is described by a phylogenetic tree or cladogram in order to (1) identify shared characteristics, (2) make inferences about the evolutionary history of the group, and (3) identify character data that could extend or improve the phylogenetic tree. LO 1.18 The student is able to evaluate evidence provided by a data set in conjunction with a phylogenetic tree or a simple cladogram to determine evolutionary history and speciation. LO 1.19 The student is able create a phylogenetic tree or simple cladogram that correctly represents evolutionary history and speciation from a provided data set. [Introduction] Cladistics is the study of evolutionary classification. Cladograms show evolutionary relationships among organisms. Comparative morphology investigates characteristics for homology and analogy to determine which organisms share a recent common ancestor. A cladogram will begin by grouping organisms based on a characteristics displayed by ALL the members of the group. Subsequently, the larger group will contain increasingly smaller groups that share the traits of the groups before them. However, they also exhibit distinct changes as the new species evolve. Further, molecular evidence from genes which rarely mutate can provide molecular clocks that tell us how long ago organisms diverged, unlocking the secrets of organisms that may have similar convergent morphology but do not share a recent common ancestor. -
An Introduction to Phylogenetic Analysis
This article reprinted from: Kosinski, R.J. 2006. An introduction to phylogenetic analysis. Pages 57-106, in Tested Studies for Laboratory Teaching, Volume 27 (M.A. O'Donnell, Editor). Proceedings of the 27th Workshop/Conference of the Association for Biology Laboratory Education (ABLE), 383 pages. Compilation copyright © 2006 by the Association for Biology Laboratory Education (ABLE) ISBN 1-890444-09-X All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording, or otherwise, without the prior written permission of the copyright owner. Use solely at one’s own institution with no intent for profit is excluded from the preceding copyright restriction, unless otherwise noted on the copyright notice of the individual chapter in this volume. Proper credit to this publication must be included in your laboratory outline for each use; a sample citation is given above. Upon obtaining permission or with the “sole use at one’s own institution” exclusion, ABLE strongly encourages individuals to use the exercises in this proceedings volume in their teaching program. Although the laboratory exercises in this proceedings volume have been tested and due consideration has been given to safety, individuals performing these exercises must assume all responsibilities for risk. The Association for Biology Laboratory Education (ABLE) disclaims any liability with regards to safety in connection with the use of the exercises in this volume. The focus of ABLE is to improve the undergraduate biology laboratory experience by promoting the development and dissemination of interesting, innovative, and reliable laboratory exercises. -
Interpreting Cladograms Notes
Interpreting Cladograms Notes INTERPRETING CLADOGRAMS BIG IDEA: PHYLOGENIES DEPICT ANCESTOR AND DESCENDENT RELATIONSHIPS AMONG ORGANISMS BASED ON HOMOLOGY THESE EVOLUTIONARY RELATIONSHIPS ARE REPRESENTED BY DIAGRAMS CALLED CLADOGRAMS (BRANCHING DIAGRAMS THAT ORGANIZE RELATIONSHIPS) What is a Cladogram ● A diagram which shows ● Is not an evolutionary ___________ among tree, ___________show organisms. how ancestors are related ● Lines branching off other to descendants or how lines. The lines can be much they have changed traced back to where they branch off. These branching off points represent a hypothetical ancestor. Parts of a Cladogram Reading Cladograms ● Read like a family tree: show ________of shared ancestry between lineages. • When an ancestral lineage______: speciation is indicated due to the “arrival” of some new trait. Each lineage has unique ____to itself alone and traits that are shared with other lineages. each lineage has _______that are unique to that lineage and ancestors that are shared with other lineages — common ancestors. Quick Question #1 ●What is a_________? ● A group that includes a common ancestor and all the descendants (living and extinct) of that ancestor. Reading Cladogram: Identifying Clades ● Using a cladogram, it is easy to tell if a group of lineages forms a clade. ● Imagine clipping a single branch off the phylogeny ● all of the organisms on that pruned branch make up a clade Quick Question #2 ● Looking at the image to the right: ● Is the green box a clade? ● The blue? ● The pink? ● The orange? Reading Cladograms: Clades ● Clades are nested within one another ● they form a nested hierarchy. ● A clade may include many thousands of species or just a few. -
Conceptual Issues in Phylogeny, Taxonomy, and Nomenclature
Contributions to Zoology, 66 (1) 3-41 (1996) SPB Academic Publishing bv, Amsterdam Conceptual issues in phylogeny, taxonomy, and nomenclature Alexandr P. Rasnitsyn Paleontological Institute, Russian Academy ofSciences, Profsoyuznaya Street 123, J17647 Moscow, Russia Keywords: Phylogeny, taxonomy, phenetics, cladistics, phylistics, principles of nomenclature, type concept, paleoentomology, Xyelidae (Vespida) Abstract On compare les trois approches taxonomiques principales développées jusqu’à présent, à savoir la phénétique, la cladis- tique et la phylistique (= systématique évolutionnaire). Ce Phylogenetic hypotheses are designed and tested (usually in dernier terme s’applique à une approche qui essaie de manière implicit form) on the basis ofa set ofpresumptions, that is, of à les traits fondamentaux de la taxonomic statements explicite représenter describing a certain order of things in nature. These traditionnelle en de leur et particulier son usage preuves ayant statements are to be accepted as such, no matter whatever source en même temps dans la similitude et dans les relations de evidence for them exists, but only in the absence ofreasonably parenté des taxons en question. L’approche phylistique pré- sound evidence pleading against them. A set ofthe most current sente certains avantages dans la recherche de réponses aux phylogenetic presumptions is discussed, and a factual example problèmes fondamentaux de la taxonomie. ofa practical realization of the approach is presented. L’auteur considère la nomenclature A is made of the three -
Systematic Morphology of Fishes in the Early 21St Century
Copeia 103, No. 4, 2015, 858–873 When Tradition Meets Technology: Systematic Morphology of Fishes in the Early 21st Century Eric J. Hilton1, Nalani K. Schnell2, and Peter Konstantinidis1 Many of the primary groups of fishes currently recognized have been established through an iterative process of anatomical study and comparison of fishes that has spanned a time period approaching 500 years. In this paper we give a brief history of the systematic morphology of fishes, focusing on some of the individuals and their works from which we derive our own inspiration. We further discuss what is possible at this point in history in the anatomical study of fishes and speculate on the future of morphology used in the systematics of fishes. Beyond the collection of facts about the anatomy of fishes, morphology remains extremely relevant in the age of molecular data for at least three broad reasons: 1) new techniques for the preparation of specimens allow new data sources to be broadly compared; 2) past morphological analyses, as well as new ideas about interrelationships of fishes (based on both morphological and molecular data) provide rich sources of hypotheses to test with new morphological investigations; and 3) the use of morphological data is not limited to understanding phylogeny and evolution of fishes, but rather is of broad utility to understanding the general biology (including phenotypic adaptation, evolution, ecology, and conservation biology) of fishes. Although in some ways morphology struggles to compete with the lure of molecular data for systematic research, we see the anatomical study of fishes entering into a new and exciting phase of its history because of recent technological and methodological innovations. -
Comparative Anatomy and Functional Morphology University of California at Berkeley Department of Integrative Biology (5 Units)
Comparative Anatomy and Functional Morphology University of California at Berkeley Department of Integrative Biology (5 Units) Course Description: This course is an in-depth look at the biology of form and function. We will examine vertebrate anatomy to understand how structures develop, how they have evolved, and how they interact with one another to allow animals to live in a variety of environments. We will study the integration of the skeletal, muscular, nervous, vascular, respiratory, digestive, endocrine, and urogenital systems to explore the historical and present diversity of vertebrate animals. Format: This course will include lecture, discussion, and laboratory sessions. Lectures will focus primarily on broad concepts and ideas. Discussion sections will emphasize how to both read and analyze primary scientific literature. Laboratory sessions will allow students to physically explore the morphologies of a diversity of taxa and will include museum specimens as well as dissections of whole animals. Lecture: Monday, Tuesday, Wednesday, and Thursday, 9:30-11:00a.m. Discussion: Monday and Thursday, 11:00a.m. or 12:00p.m. Laboratory: Monday, Tuesday, Wednesday, and Thursday, 2:00-5:00p.m. All students must take lectures, discussion sections, and laboratory sections concurrently. Attendance of all sections is required. Goals: 1. A comparative approach will allow students to gain experience in identifying similarities and differences among taxa and further their understanding of how both evolutionary and environmental contexts influence the morphology and function. 2. Students will improve their ability to ask questions and answer them using scientific methodology. 3. Students will gain factual knowledge of terms and concepts regarding vertebrate anatomy and functional morphology. -
Comparative Anatomy: for Educators and Caregivers
ABOUT THIS PACKET COMPARATIVE ANATOMY: FOR EDUCATORS AND CAREGIVERS INTRODUCTION This Burke Box packet uses the basic principles of comparative anatomy to lead students through a critical thinking investigation. Learners and educators can explore digital specimen cards, view a PowerPoint lesson, and conduct independent research through recommended resources before filling in a final comparative Venn diagram. By the end of the packet, students will use a comparative anatomy lens to independently answer the question: are bats considered birds or mammals? BACKGROUND The study of comparative anatomy can be traced back to investigations made by philosophers in ancient Greece. Using firsthand observations and accounts by hunters, farmers, and doctors, Aristotle and other Greek philosophers made detailed anatomical comparisons between species. The field of comparative anatomy has contributed to a better understanding of the evolution of species. Once thought to be a linear pattern, studies utilizing the principles of comparative anatomy identified shared ancestors among many species, indicating evolution occurs in a branching manner. Comparative anatomy has been used to prove relationships between species previously thought unrelated, or disprove relationships between species that share similar features but are not biologically related. Comparative anatomy can study internal organs and soft tissues, skeletal structures, embryonic phases and DNA. Researchers look for homologous structures, or structures within species that are the same internally. These structures indicate shared ancestry and an evolutionary relationships between species. Researchers also look for analogous structures, which may look similar at a glance but have different internal structures. Analogous structures indicate the species have divergent ancestry. Vestigial structures are also important in comparative anatomy. -
Evolution of the Muscular System in Tetrapod Limbs Tatsuya Hirasawa1* and Shigeru Kuratani1,2
Hirasawa and Kuratani Zoological Letters (2018) 4:27 https://doi.org/10.1186/s40851-018-0110-2 REVIEW Open Access Evolution of the muscular system in tetrapod limbs Tatsuya Hirasawa1* and Shigeru Kuratani1,2 Abstract While skeletal evolution has been extensively studied, the evolution of limb muscles and brachial plexus has received less attention. In this review, we focus on the tempo and mode of evolution of forelimb muscles in the vertebrate history, and on the developmental mechanisms that have affected the evolution of their morphology. Tetrapod limb muscles develop from diffuse migrating cells derived from dermomyotomes, and the limb-innervating nerves lose their segmental patterns to form the brachial plexus distally. Despite such seemingly disorganized developmental processes, limb muscle homology has been highly conserved in tetrapod evolution, with the apparent exception of the mammalian diaphragm. The limb mesenchyme of lateral plate mesoderm likely plays a pivotal role in the subdivision of the myogenic cell population into individual muscles through the formation of interstitial muscle connective tissues. Interactions with tendons and motoneuron axons are involved in the early and late phases of limb muscle morphogenesis, respectively. The mechanism underlying the recurrent generation of limb muscle homology likely resides in these developmental processes, which should be studied from an evolutionary perspective in the future. Keywords: Development, Evolution, Homology, Fossils, Regeneration, Tetrapods Background other morphological characters that may change during The fossil record reveals that the evolutionary rate of growth. Skeletal muscles thus exhibit clear advantages vertebrate morphology has been variable, and morpho- for the integration of paleontology and evolutionary logical deviations and alterations have taken place unevenly developmental biology. -
How to Build a Cladogram
Name: _____________________________________ TOC#____ How to Build a Cladogram. Background: Cladograms are diagrams that we use to show phylogenies. A phylogeny is a hypothesized evolutionary history between species that takes into account things such as physical traits, biochemical traits, and fossil records. To build a cladogram one must take into account all of these traits and compare them among organisms. Building a cladogram can seem challenging at first, but following a few simple steps can be very beneficial. Watch the following, short video, read the directions, and then practice building some cladograms. Video: http://ccl.northwestern.edu/simevolution/obonu/cladograms/Open-This-File.swf Instructions: There are two steps that will help you build a cladogram. Step One “The Chart”: 1. First, you need to make a “characteristics chart” the helps you analyze which characteristics each specieshas. Fill in a “x” for yes it has the trait and “o” for “no” for each of the organisms below. 2. Then you count how many times you wrote yes for each characteristic. Those characteristics with a large number of “yeses” are more ancestral characteristics because they are shared by many. Those traits with fewer yeses, are shared derived characters, or derived characters and have evolved later. Chart Example: Backbone Legs Hair Earthworm O O O Fish X O O Lizard X X O Human X X X “yes count” 3 2 1 Step Two “The Venn Diagram”: This step will help you to learn to build Cladograms, but once you figure it out, you may not always need to do this step. -
Phylogenetic Systematics As the Basis of Comparative Biology
SMITHSONIAN CONTRIBUTIONS TO BOTANY NUMBER 73 Phylogenetic Systematics as the Basis of Comparative Biology KA. Funk and Daniel R. Brooks SMITHSONIAN INSTITUTION PRESS Washington, D.C. 1990 ABSTRACT Funk, V.A. and Daniel R. Brooks. Phylogenetic Systematics as the Basis of Comparative Biology. Smithsonian Contributions to Botany, number 73, 45 pages, 102 figures, 12 tables, 199O.-Evolution is the unifying concept of biology. The study of evolution can be approached from a within-lineage (microevolution) or among-lineage (macroevolution) perspective. Phylogenetic systematics (cladistics) is the appropriate basis for all among-liieage studies in comparative biology. Phylogenetic systematics enhances studies in comparative biology in many ways. In the study of developmental constraints, the use of such phylogenies allows for the investigation of the possibility that ontogenetic changes (heterochrony) alone may be sufficient to explain the perceived magnitude of phenotypic change. Speciation via hybridization can be suggested, based on the character patterns of phylogenies. Phylogenetic systematics allows one to examine the potential of historical explanations for biogeographic patterns as well as modes of speciation. The historical components of coevolution, along with ecological and behavioral diversification, can be compared to the explanations of adaptation and natural selection. Because of the explanatory capabilities of phylogenetic systematics, studies in comparative biology that are not based on such phylogenies fail to reach their potential. OFFICIAL PUBLICATION DATE is handstamped in a limited number of initial copies and is recorded in the Institution's annual report, Srnithonhn Year. SERIES COVER DESIGN: Leaf clearing from the katsura tree Cercidiphyllumjaponicum Siebold and Zuccarini. Library of Cmgrcss Cataloging-in-PublicationDiaa Funk, V.A (Vicki A.), 1947- PhylogmttiC ryrtcmaticsas tk basis of canpamtive biology / V.A. -
Comparative Anatomy of the Caudal Skeleton of Lantern Fishes of The
Revista de Biología Marina y Oceanografía Vol. 51, Nº3: 713-718, diciembre 2016 DOI 10.4067/S0718-19572016000300025 RESEARCH NOTE Comparative anatomy of the caudal skeleton of lantern fishes of the genus Triphoturus Fraser-Brunner, 1949 (Teleostei: Myctophidae) Anatomía comparada del complejo caudal de los peces linterna del género Triphoturus Fraser-Brunner, 1949 (Teleostei: Myctophidae) Uriel Rubio-Rodríguez1, Adrián F. González-Acosta1 and Héctor Villalobos1 1Instituto Politécnico Nacional, Departamento de Pesquerías y Biología Marina, CICIMAR-IPN, Av. Instituto Politécnico Nacional s/n, Col. Playa Palo de Santa Rita, La Paz, BCS, 23096, México. [email protected] Abstract.- The caudal skeleton provides important information for the study of the systematics and ecomorphology of teleostean fish. However, studies based on the analysis of osteological traits are scarce for fishes in the order Myctophiformes. This paper describes the anatomy of the caudal bones of 3 Triphoturus species: T. mexicanus (Gilbert, 1890), T. nigrescens (Brauer, 1904) and T. oculeum (Garman, 1899). A comparative analysis was performed on cleared and stained specimens to identify the differences and similarities of bony elements and the organization of the caudal skeleton among the selected species. Triphoturus mexicanus differs from T. oculeum in the presence of medial neural plates and a foramen in the parhypural, while T. nigrescens differs from their congeners in a higher number of hypurals (2 + 4 = 6) and the separation and number of cartilaginous elements. This osteological description of the caudal region allowed updates to the nomenclature of bony and cartilaginous elements in myctophids. Further, this study allows for the recognition of structural differences between T. -
Phylogenetic Systematics Using POY Final Final.Book
Dynamic Homology and Phylogenetic Systematics: A Unified Approach Using POY Ward Wheeler Lone Aagesen Division of Invertebrate Zoology Division of Invertebrate Zoology American Museum of Natural History American Museum of Natural History Claudia P. Arango Julián Faivovich Division of Invertebrate Zoology Division of Vertebrate Zoology American Museum of Natural History American Museum of Natural History Taran Grant Cyrille D’Haese Division of Vertebrate Zoology Département Systématique et Evolution American Museum of Natural History Museum National d'Histoire Naturelle Daniel Janies William Leo Smith Department of Biomedical Informatics Division of Vertebrate Zoology The Ohio State University American Museum of Natural History Andrés Varón Gonzalo Giribet Department of Computer Science Museum of Comparative Zoology City University of New York Department of Organismic & Evolutionary Biology Harvard University Published in cooperation with NASA Fundamental Space Biology, the U.S. Army Research Laboratory, and the U.S. Army Research Office Copyright 2006 by the American Museum of Natural History All rights reserved Printed in the United States of America Library of Congress Cataloging-in-Publication Data Dynamic homology and phylogenetic systematics : a unified approach using POY / Ward Wheeler ... [et al.]. p. cm. "Published in cooperation with NASA Fundamental Space Biology." Includes bibliographical references. ISBN 0-913424-58-7 (alk. paper) 1. Homology (Biology) 2. Animals--Classification. 3. Phylogeny. 4. POY. I. Wheeler, Ward. QH367.5.D96