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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
Morphology and Histology of the Testicles
MORPHOLOGY AND HISTOLOGY OF THE TESTICLES OF QUEEN ANGELFISH Holacanthus ciliaris Arquivos de Ciências do Mar (LINNAEUS, 1758) (TELEOSTEI: PERCIFORMES: POMACANTHIDAE) Morfologia e histologia dos testículos do peixe-anjo Holacanthus ciliaris (Linnaeus, 1758) (Teleostei: Perciformes: Pomacanthidae) Mara C. Nottingham1 , José Roberto Feitosa Silva2 , Maria Elisabeth de Araújo1, 3 ABSTRACT Aspects of the morphology and histology of the testicles of Holacanthus ciliaris were studied in this research. Monthly collections of living fish, totaling 39 males, were carried out between December, 2000 and November, 2001 on the coast of Ceará State, Brazil. The total length of the fish varied between 63.4 mm and 334 mm, the standard length between 50.9 mm and 270 mm, and the total weight between 6,70 g and 590 g. The testicles were bilobed and ribbon-like in shape, with firm texture and coloration varying between transparent and amber. In the histological study, male gametes were found in all espermatogenesis stages along the months of the year. Key words: Holacanthus ciliaris, Pomacanthidae, reef fish, reproduction. RESUMO Aspectos da morfologia e histologia de testículos de Holacanthus ciliaris foram estudados nesta pesquisa. Coletas mensais de peixes vivos, totalizando 39 machos, foram realizadas entre os meses de dezembro de 2000 e novembro de 2001 na costa do Estado do Ceará. O comprimento total dos peixes variou entre 63,4 e 334mm, o comprimento padrão entre 50,9 e 270mm e o peso total entre 6,70 e 590g. Os testículos apresentavam-se bilobulados, em forma de fita, com textura firme e coloração variando entre transparente e âmbar. No estudo histológico foram encontrados gametas masculinos em todos os estágios da espermatogênese durante os meses do ano. -
Dedication Donald Perrin De Sylva
Dedication The Proceedings of the First International Symposium on Mangroves as Fish Habitat are dedicated to the memory of University of Miami Professors Samuel C. Snedaker and Donald Perrin de Sylva. Samuel C. Snedaker Donald Perrin de Sylva (1938–2005) (1929–2004) Professor Samuel Curry Snedaker Our longtime collaborator and dear passed away on March 21, 2005 in friend, University of Miami Professor Yakima, Washington, after an eminent Donald P. de Sylva, passed away in career on the faculty of the University Brooksville, Florida on January 28, of Florida and the University of Miami. 2004. Over the course of his diverse A world authority on mangrove eco- and productive career, he worked systems, he authored numerous books closely with mangrove expert and and publications on topics as diverse colleague Professor Samuel Snedaker as tropical ecology, global climate on relationships between mangrove change, and wetlands and fish communities. Don pollutants made major scientific contributions in marine to this area of research close to home organisms in south and sedi- Florida ments. One and as far of his most afield as enduring Southeast contributions Asia. He to marine sci- was the ences was the world’s publication leading authority on one of the most in 1974 of ecologically important inhabitants of “The ecology coastal mangrove habitats—the great of mangroves” (coauthored with Ariel barracuda. His 1963 book Systematics Lugo), a paper that set the high stan- and Life History of the Great Barracuda dard by which contemporary mangrove continues to be an essential reference ecology continues to be measured. for those interested in the taxonomy, Sam’s studies laid the scientific bases biology, and ecology of this species. -
Belonidae Bonaparte 1832 Needlefishes
ISSN 1545-150X California Academy of Sciences A N N O T A T E D C H E C K L I S T S O F F I S H E S Number 16 September 2003 Family Belonidae Bonaparte 1832 needlefishes By Bruce B. Collette National Marine Fisheries Service Systematics Laboratory National Museum of Natural History, Washington, DC 20560–0153, U.S.A. email: [email protected] Needlefishes are a relatively small family of beloniform fishes (Rosen and Parenti 1981 [ref. 5538], Collette et al. 1984 [ref. 11422]) that differ from other members of the order in having both the upper and the lower jaws extended into long beaks filled with sharp teeth (except in the neotenic Belonion), the third pair of upper pharyngeal bones separate, scales on the body relatively small, and no finlets following the dorsal and anal fins. The nostrils lie in a pit anterior to the eyes. There are no spines in the fins. The dorsal fin, with 11–43 rays, and anal fin, with 12–39 rays, are posterior in position; the pelvic fins, with 6 soft rays, are located in an abdominal position; and the pectoral fins are short, with 5–15 rays. The lateral line runs down from the pectoral fin origin and then along the ventral margin of the body. The scales are small, cycloid, and easily detached. Precaudal vertebrae number 33–65, caudal vertebrae 19–41, and total verte- brae 52–97. Some freshwater needlefishes reach only 6 or 7 cm (2.5 or 2.75 in) in total length while some marine species may attain 2 m (6.5 ft). -
Redalyc.Isopods (Isopoda: Aegidae, Cymothoidae, Gnathiidae)
Revista de Biología Tropical ISSN: 0034-7744 [email protected] Universidad de Costa Rica Costa Rica Bunkley-Williams, Lucy; Williams, Jr., Ernest H.; Bashirullah, Abul K.M. Isopods (Isopoda: Aegidae, Cymothoidae, Gnathiidae) associated with Venezuelan marine fishes (Elasmobranchii, Actinopterygii) Revista de Biología Tropical, vol. 54, núm. 3, diciembre, 2006, pp. 175-188 Universidad de Costa Rica San Pedro de Montes de Oca, Costa Rica Available in: http://www.redalyc.org/articulo.oa?id=44920193024 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Isopods (Isopoda: Aegidae, Cymothoidae, Gnathiidae) associated with Venezuelan marine fishes (Elasmobranchii, Actinopterygii) Lucy Bunkley-Williams,1 Ernest H. Williams, Jr.2 & Abul K.M. Bashirullah3 1 Caribbean Aquatic Animal Health Project, Department of Biology, University of Puerto Rico, P.O. Box 9012, Mayagüez, PR 00861, USA; [email protected] 2 Department of Marine Sciences, University of Puerto Rico, P.O. Box 908, Lajas, Puerto Rico 00667, USA; ewil- [email protected] 3 Instituto Oceanografico de Venezuela, Universidad de Oriente, Cumaná, Venezuela. Author for Correspondence: LBW, address as above. Telephone: 1 (787) 832-4040 x 3900 or 265-3837 (Administrative Office), x 3936, 3937 (Research Labs), x 3929 (Office); Fax: 1-787-834-3673; [email protected] Received 01-VI-2006. Corrected 02-X-2006. Accepted 13-X-2006. Abstract: The parasitic isopod fauna of fishes in the southern Caribbean is poorly known. In examinations of 12 639 specimens of 187 species of Venezuelan fishes, the authors found 10 species in three families of isopods (Gnathiids, Gnathia spp. -
Diversidade Funcional Da Ictiofauna Da Zona De Arrebentação De Jaguaribe (...)
FAVERO, FLT. Diversidade funcional da ictiofauna da zona de arrebentação de Jaguaribe (...) UNIVERSIDADE FEDERAL RURAL DE PERNAMBUCO PRÓ-REITORIA DE PESQUISA E PÓS-GRADUAÇÃO PROGRAMA DE PÓS-GRADUAÇÃO EM RECURSOS PESQUEIROS E AQUICULTURA DIVERSIDADE FUNCIONAL DA ICTIOFAUNA DA ZONA DE ARREBENTAÇÃO DE JAGUARIBE, ITAMARACÁ, LITORAL NORTE DE PERNAMBUCO Fernanda de Lima Toledo Favero Dissertação apresentada ao Programa de Pós-Graduação em Recursos Pesqueiros e Aquicultura da Universidade Federal Rural de Pernambuco, como exigência para obtenção do título de Mestre. Prof. Dr. WILLIAM SEVERI Orientador Recife, Agosto/ 2019 FAVERO, FLT. Diversidade funcional da ictiofauna da zona de arrebentação de Jaguaribe (...) 2 Dados Internacionais de Catalogação na Publicação (CIP) Sistema Integrado de Bibliotecas da UFRPE Biblioteca Central, Recife-PE, Brasil F273d Favero, Fernanda de Lima Toledo. Diversidade funcional da ictiofauna da zona de arrebentação de Jaguaribe, Itamaracá, litoral norte de Pernambuco / Fernanda de Lima Toledo Favero. – Recife, 2019. 66 f.: il. Orientador(a): William Severi. Dissertação (Mestrado) – Universidade Federal Rural de Pernambuco, Programa de Pós-Graduação em Recursos Pesqueiros e Aquicultura, Recife, BR-PE, 2019. Inclui referências. 1. Guildas funcionais 2. Ecomorfologia 3. Índices de diversidade funcional I. Severi, William, orient. II. Título. CDD 639.3 FAVERO, FLT. Diversidade funcional da ictiofauna da zona de arrebentação de Jaguaribe (...) 3 UNIVERSIDADE FEDERAL RURAL DE PERNAMBUCO PRÓ-REITORIA DE PESQUISA E PÓS-GRADUAÇÃO PROGRAMA DE PÓS-GRADUAÇÃO EM RECURSOS PESQUEIROS E AQÜICULTURA DIVERSIDADE FUNCIONAL DA ICTIOFAUNA DA ZONA DE ARREBENTAÇÃO DE JAGUARIBE, ITAMARACÁ, LITORAL NORTE DE PERNAMBUCO Fernanda de Lima Toledo Favero Dissertação julgada adequada para obtenção do título de mestre em Recursos Pesqueiros e Aquicultura. -
Fishes from Complex a Offerings of Templo Mayor of Tenochtitlan (Mexico City, Mexico)
Archaeofauna 27 (2018): 21-36 Fishes from Complex A offerings of Templo Mayor of Tenochtitlan (Mexico City, Mexico) ANA FABIOLA GUZMÁN Subdirección de laboratorios y Apoyo Académico, Instituto Nacional de Antropología e Historia, Moneda 16, Col. Centro, Ciudad de México, CP 06060, México, e-mail: [email protected], and Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prolongación de Carpio y Plan de Ayala, Ciudad de México, CP 11340, México. (Received 1 September 2016; Revised 25 January 2017; Accepted 10 February 2017) RESUMEN: El presente trabajo aborda los restos de peces encontrados en las once ofrendas que integran el Complejo A, depositadas alrededor del Templo Mayor de Tenochtitlán, el cual fuera el principal edificio ceremonial de la cultura mexica. El estudio de más de 35,000 restos muestra que se usaron 391 individuos de 63 especies y 35 familias. Siete especies fueron particularmen- te importantes por la cantidad de individuos y su frecuencia de uso, aunque el único atributo en común a las 11 ofrendas, es el pez sierra (Pristis). Sólo fueron ofrendados peces marinos, predominando las formas del Atlántico. La mayoría de los peces fueron depositados con una preparación taxidérmica para eliminar la columna vertebral. Las ofrendas colocadas en el relleno constructivo fueron marcadamente menos diversas respecto de las otras ofrendas colocadas en cistas. Aunque se pudieron relacionar algunas especies mencionadas por Sahagún con las ofren- dadas, las fuentes etnohistóricas proporcionan poca información de los peces y su uso, de ahí la importancia de un apropiado rescate y estudio de los restos de peces como fuente primaria y casi exclusiva de las relaciones entre el hombre mesoamericano y este recurso. -
Centropyge, Pomacanthidae
Galaxea, Journal of Coral Reef Studies 22: 31-36(2020) Note Filling an empty role: first report of cleaning by pygmy angelfishes (Centropyge, Pomacanthidae) Pauline NARVAEZ*1, 2, 3 and Renato A. MORAIS1, 3 1 ARC Centre of Excellence for Coral Reef Studies, 1 James Cook Drive, Townsville, Queensland 4810, Australia 2 Centre for Sustainable Tropical Fisheries and Aquaculture, James Cook University, 1 James Cook Drive, Townsville, Queensland 4810, Australia 3 College of Science and Engineering, James Cook University, 1 James Cook Drive, Townsville, Queensland 4810, Aus tralia * Corresponding author: Pauline Narvaez Email: [email protected] Communicated by Frederic Sinniger (Associate EditorinChief) Abstract Cleaner fishes remove ectoparasites, mucus and search of ectoparasites, mucus, and dead or diseased dead tissues from other ‘client’ organisms. These mutu tissue (Côté 2000; Côté and Soares 2011). Cleaners have alistic interactions provide benefits for the ‘clients’ and, been classified as either dedicated or facultative, depend on a larger scale, maintain healthy reef ecosystems. Here, ing on their degree of reliance on cleaning interactions for we report two species of angelfishes, Centropyge bicolor accessing food (Vaughan et al. 2017). While dedicated and C. tibicen, acting as cleaners of the blue tang cleaners rely almost exclusively on cleaning, facultative Paracanthurus hepatus in an aquarium. This observation ones also exploit other food sources. In total, 208 fish and is the first time that pygmy angelfishes are recorded 51 shrimp species have been reported as either dedicated cleaning in any en vironment. This novel cleaning ob or facultative cleaners (Vaughan et al. 2017). -
Sharkcam Fishes
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Info Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2020. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition. Los Angeles: Explore.org Ocean Frontiers. 201 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 5.0. 24 February 2020. 2 Table of Contents Identification Images Species Profiles Additional Info Index TABLE OF CONTENTS SILVERY FISHES (23) ........................... 47 African Pompano ......................................... 48 FOREWORD AND INTRODUCTION .............. 6 Crevalle Jack ................................................. 49 IDENTIFICATION IMAGES ...................... 10 Permit .......................................................... 50 Sharks and Rays ........................................ 10 Almaco Jack ................................................. 51 Illustrations of SharkCam -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Sparisoma Rubripinne (Yellowtail Or Redfin Parrotfish)
UWI The Online Guide to the Animals of Trinidad and Tobago Ecology Sparisoma rubripinne (Yellowtail or Redfin Parrotfish) Family: Scaridae (Parrotfish) Order: Perciformes (Perch and Allied Fish) Class: Actinopterygii (Ray-finned Fish) Fig. 1. Yellowtail parrotfish, Sparisoma rubripinne. [http://www.tusentakk2.com/images/Other%20Photos/Underwater/Pec-Swimmers/YellowtailParrot.jpg, downloaded 11 April 2016] TRAITS. Parrotfish can be recognised by their beak-like fused teeth which are a tightly packed mosaic. The yellowtail or redfin parrotfish occurs in two colour phases. The terminal phase (Fig. 1) is the mature male with blue to green colour, a black spot at the base of the pectoral fin, and the tail fin with a yellow centre and translucent margin. The drab or initial phase includes either mature females or immature males, and has a light grey-brown colour with a white ventral region, alternate dark and pale bars along the chin, a yellow caudal peduncle (fin base) and tail fin, and red anal and pelvic fins (Fig. 2). The juvenile has a mottled pattern (Fig. 3). Fins include ten dorsal soft rays, nine dorsal spines, three anal spines and three anal soft rays. The length of the fish is 48cm in adult males (Randall, 1996). DISTRIBUTION. The species is found mostly in the western Atlantic and the Caribbean (Fig. 4). The fish is native to Trinidad and Tobago (Rocha et al., 2012). HABITAT AND ACTIVITY. Found in marine systems. The habitat ranges from reefs to sea grass beds of depth 1-15m. They inhabit shallow as well as rocky coral reefs, generally in the high energy areas of the reef.