Lignin-Degrading Peroxidases in Polyporales: an Evolutionary Survey Based on 10 Sequenced Genomes
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The Good, the Bad and the Tasty: the Many Roles of Mushrooms
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 85: 125–157. The good, the bad and the tasty: The many roles of mushrooms K.M.J. de Mattos-Shipley1,2, K.L. Ford1, F. Alberti1,3, A.M. Banks1,4, A.M. Bailey1, and G.D. Foster1* 1School of Biological Sciences, Life Sciences Building, University of Bristol, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK; 2School of Chemistry, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK; 3School of Life Sciences and Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK; 4School of Biology, Devonshire Building, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK *Correspondence: G.D. Foster, [email protected] Abstract: Fungi are often inconspicuous in nature and this means it is all too easy to overlook their importance. Often referred to as the “Forgotten Kingdom”, fungi are key components of life on this planet. The phylum Basidiomycota, considered to contain the most complex and evolutionarily advanced members of this Kingdom, includes some of the most iconic fungal species such as the gilled mushrooms, puffballs and bracket fungi. Basidiomycetes inhabit a wide range of ecological niches, carrying out vital ecosystem roles, particularly in carbon cycling and as symbiotic partners with a range of other organisms. Specifically in the context of human use, the basidiomycetes are a highly valuable food source and are increasingly medicinally important. In this review, seven main categories, or ‘roles’, for basidiomycetes have been suggested by the authors: as model species, edible species, toxic species, medicinal basidiomycetes, symbionts, decomposers and pathogens, and two species have been chosen as representatives of each category. -
AR TICLE Calocybella, a New Genus For
IMA FUNGUS · 6(1): 1–11 (2015) doi:10.5598/imafungus.2015.06.01.01 Calocybella, a new genus for Rugosomyces pudicus (Agaricales, ARTICLE Lyophyllaceae) and emendation of the genus Gerhardtia Alfredo Vizzini1, Giovanni Consiglio2, Ledo Setti3, and Enrico Ercole1 1Department of Life Sciences and Systems Biology, University of Torino, Viale P.A. Mattioli 25, I-10125 Torino, Italy; corresponding author e-mail: [email protected] 2Via Ronzani 61, I-40033 Casalecchio di Reno (Bologna), Italy 3Via C. Pavese 1, I-46029 Suzzara (Mantova), Italy Abstract: Calocybella is a new genus established to accommodate Rugosomyces pudicus. Phylogenetic Key words: analyses based on a LSU-ITS sequence dataset place Calocybella sister to Gerhardtia from which it differs Agaricomycetes morphologically in the presence of clamp-connections and reddening context. The genus Gerhardtia is Calocybe emended to also include taxa with smooth spores. According to our morphological analysis of voucher Lyophyllaceae material, Calocybe juncicola s. auct. is shown to be Calocybella pudica. Lyophyllum FORTHCOMING MEETINGS FORTHCOMING tricholomatoid clade LSU and ITS sequences taxonomy Article info: Submitted: 12 January 2015; Accepted: 10 March 2015; Published: 23 March 2015. INTRODUCTION cutting or bruising, and red-violaceous after applying a drop of NH3 or KOH, and verruculose spores. Since these features The generic name Rugosomyces, typified by Agaricus appeared aberrant within Rugosomyces, they established the onychinus, was established by Raithelhuber (1979) for the new subsect. Rubescentes of sect. Rugosomyces for it. As lyophylloid species (taxa with siderophilous basidia) previously this puzzling taxon combines features of several genera within placed in Calocybe with a collybioid habit, bright colourations Lyophyllaceae, the taxonomic position of this species has been (vacuolar pigment) and a pileipellis consisting of inflated, greatly debated and was far from clear. -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
AR TICLE Calocybella, a New Genus for Rugosomyces
IMA FUNGUS · 6(1): 1–11 (2015) [!644"E\ 56!46F6!6! Calocybella, a new genus for Rugosomyces pudicusAgaricales, ARTICLE Lyophyllaceae and emendation of the genus Gerhardtia / X OO !] % G 5*@ 3 S S ! !< * @ @ + Z % V X ;/U 54N.!6!54V N K . [ % OO ^ 5X O F!N.766__G + N 3X G; %!N.7F65"@OO U % N Abstract: Calocybella Rugosomyces pudicus; Key words: *@Z.NV@? Calocybella Gerhardtia Agaricomycetes . $ VGerhardtia is Calocybe $ / % Lyophyllaceae Calocybe juncicola Calocybella pudica Lyophyllum *@Z NV@? $ Article info:@ [!5` 56!4K/ [!6U 56!4K; [5_U 56!4 INTRODUCTION .% >93 2Q9 % @ The generic name Rugosomyces [ Agaricus Rugosomyces onychinus !"#" . Rubescentes Rugosomyces / $ % OO $ % Calocybe Lyophyllaceae $ % \ G IQ 566! * % @SU % +!""! Rhodocybe. % % $ Rubescentes V O Rugosomyces [ $ Gerhardtia % % . Carneoviolacei $ G IG 5667 Rugosomyces pudicus Calocybe Lyophyllum . Calocybe / 566F / Rugosomyces 9 et al5665 U %et al5665 +!""" 2 O Rugosomyces as !""4566756!5 9 5664; Calocybe R. pudicus Lyophyllaceae 9 et al 5665 56!7 Calocybe <>/? ; I G 566" R. pudicus * @ @ !"EF+!"""G IG 56652 / 566F -
Pioneering a Fungal Inventory at Cusuco National Park, Honduras
Journal of Mesoamerican Biology Special Issue: Biodiversity of the Cordillera del Merendón Volume 1 (1), June, 2021 Pioneering a fungal inventory at Cusuco National Park, Honduras DANNY HAELEWATERS1,2,3,*, NATHAN SCHOUttETEN3, PAMELA MEDINA-VAN BERKUM1,4, THOMAS E. MARTIN1, ANNEMIEKE VERBEKEN3 AND M. CATHERINE AIME2 1 Operation Wallacea Ltd, Wallace House, Old Boling- broke, Lincolnshire, PE23 4EX, UK. Abstract 2 Department of Botany and Plant Pathology, Purdue University, 915 W. State Street, West Lafayette, Indi- Neotropical cloud forests are biologically and eco- ana 47907, USA. logically unique and represent a largely untapped 3 Research Group Mycology, Department of Biolo- reservoir of species new to science, particularly for gy, Ghent University, 35 K.L. Ledeganckstraat, 9000 understudied groups like those within the King- Ghent, Belgium. dom Fungi. We conducted a three-week fungal 4 Max Planck Institute for Chemical Ecology, Hans- survey within Cusuco National Park, Honduras Knöll-Straße 8, 07745 Jena, Germany. and made 116 collections of fungi in forest habi- tats at 1287–2050 m a.s.l. Undescribed species are *Corresponding author. Email: likely to be present in those collections, includ- [email protected] ing members of the genera Calostoma (Boletales), Chlorociboria, Chlorosplenium, Ionomidotis (Hel- otiales), Amparoina, Cyathus, Gymnopus, Pterula (Agaricales), Lactifluus (Russulales), Mycocitrus (Hypocreales), Trechispora (Trechisporales), and Article info Xylaria (Xylariales). In this paper, we discuss the contributions and impacts of mycological surveys Keywords: in the Neotropics and propose the establishment of Central America, Cloud Forest, Fungal Diversity, a long-term mycological inventory at Cusuco Na- Honduras, Tropical Fungi tional Park—the first of its kind in northern Central America. -
Arthromyces and Blastosporella, Two New Genera of Conidia-Producing Lyophylloid Agarics (Agaricales, Basidiomycota) from the Neotropics
mycological research 111 (2007) 572–580 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres Arthromyces and Blastosporella, two new genera of conidia-producing lyophylloid agarics (Agaricales, Basidiomycota) from the neotropics Timothy J. BARONIa,*, Ana Esperanza FRANCO-MOLANOb, D. Jean LODGEc, Daniel L. LINDNERd, Egon HORAKe, Valerie HOFSTETTERf aDepartment of Biological Sciences, PO Box 2000, State University of New York, College at Cortland, Cortland, New York 13045, USA bLaboratorio de Taxonomı´a de Hongos, Instituto de Biologı´a, Universidad de Antioquia A.A.1226, Medellı´n, Colombia cCenter for Forest Mycology, USDA, Forest-Service, PO Box 1377, Luquillo 00773-1377, Puerto Rico dUSDA-FS Forest Products Laboratory, Center for Forest Mycology Research, One Gifford Pinchot Dr., Madison, WI 53726-2398, USA ec/o Herbarium, Geobotany, ETHZ, Universitaetsstrasse 16, CH-8092 Zurich, Switzerland fBotany Department, Duke University, Durham, NC 27708-0338, USA article info abstract Article history: Two new genera encompassing three new species of lyophylloid agarics that produce con- Received 28 July 2006 idia on the basidiomata are described. Arthromyces is a genus comprised of two very differ- Received in revised form ent arthrospore-producing mushroom species found in the Greater Antilles and Central 9 January 2007 America. Blastosporella is a monotypic genus with spherical balls of blastospores covering Accepted 6 March 2007 the pileus surface with age and is known from Hispaniola and Colombia. A key to the spe- Published online 15 March 2007 cies of Arthromyces is included. Corresponding Editor: Michael Weiß ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. -
The Many Roles of Mushrooms
de Mattos-Shipley, K. M. J., Ford, K. L., Alberti, F., Banks, A., Bailey, A. M., & Foster, G. (2016). The good, the bad and the tasty: The many roles of mushrooms. Studies in Mycology, 85, 125-157. https://doi.org/10.1016/j.simyco.2016.11.002 Publisher's PDF, also known as Version of record License (if available): CC BY-NC-ND Link to published version (if available): 10.1016/j.simyco.2016.11.002 Link to publication record in Explore Bristol Research PDF-document University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 85: 125–157. The good, the bad and the tasty: The many roles of mushrooms K.M.J. de Mattos-Shipley1,2, K.L. Ford1, F. Alberti1,3, A.M. Banks1,4, A.M. Bailey1, and G.D. Foster1* 1School of Biological Sciences, Life Sciences Building, University of Bristol, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK; 2School of Chemistry, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK; 3School of Life Sciences and Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK; 4School of Biology, Devonshire Building, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK *Correspondence: G.D. Foster, [email protected] Abstract: Fungi are often inconspicuous in nature and this means it is all too easy to overlook their importance. -
Taxonomic Revision and Examination of Ecological Transitions of the Lyophyllaceae (Basidiomycota, Agaricales) Based on a Multigene Phylogeny
Cryptogamie, Mycologie, 2014, 35 (4): 399-425 © 2014 Adac. Tous droits réservés Taxonomic revision and examination of ecological transitions of the Lyophyllaceae (Basidiomycota, Agaricales) based on a multigene phylogeny Valérie HOFSTETTERa*, Scott Alan REDHEADb#, Frank KAUFFc#, Jean-Marc MONCALVOd, Patrick Brandon MATHENYe & Rytas VILGALYSf aAgroscope Changins-Wädenswil, Institut des sciences en production végétale IPV, CP1012, 1260 Nyon1, Switzerland e-mail: [email protected] bNational Mycological Herbarium, Eastern Cereal and Oilseed Research Centre, Science and Technology Branch, Agriculture and Agri-Food Canada, Ottawa, Ontario, Canada K1A 0C6 cFachbereich Biologie, Abt. Molekulare Phylogenetik, Technische Universität Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany dDepartment of Natural History, Royal Ontario Museum, and Department of Ecology & Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada M5S 2C6 fDepartment of Ecology and Evolutionary Biology, University of Tennessee, Knoxville TN 37996-1610, USA gDepartment of Biology, Duke University, Durham, NC 27708, USA Abstract – We explored evolutionary relationships within the Lyophyllaceae by combining sequence data from six loci. The most likely phylogram led us to reconsider the Lyophyllaceae classification with the recognition of two new genera (Myochromella and Sagaranella) based on ecological and/or morphological distinctiveness. Lyophyllaceae are ecologically highly diversified and our phylogeny suggests that four to five ecological transitions from free-living to parasitic or mutualistic lifestyles have occurred within the family. Due to moderate phylogenetic support recovered for several relationships within that clade and due to the uncertainty about the ecological strategy adopted by five of the sampled species, three out of these transitions could be unequivocally reconstructed suggesting that saprotrophy is plesiomorphic for Lyophyllaceae. -
In Cusuco National Park, Honduras
Journal of Mesoamerican Biology Special Issue: Biodiversity of the Cordillera del Merendón Volume 1 (1), June, 2021 Consejo Editorial JOSIAH TOWNSEND Editor invitado Indiana University of Pennsylvania CLAUDIA LARDIZABAL Director de Revista Departamento de Biología UNAH-VS WILFREDO MATAMOROS Universidad de Ciencias y Artes de Chiapas IVÓN RAMIREZ Centro de Investigación Científica de Yucatán FRANCISCO GARCIA DE LEÓN Centro de Investigaciones Biológicas del Noroeste de México ANA CHAVEZ Departamento de Biología UNAH-VS Editorial UNAH ADALID AGUILAR - Corrección ARNOLD MEJIA - Diagramación DANIELA LOZANO - Diseño de portada Index 05 06 Editorial A review of the ecological value of Cusuco National Park: an urgent call for conservation action in a highly threatened 51 Mesoamerican cloud forest Bat assemblages and their Thomas E. MARTIN & OTROS ectoparasites in a Honduran cloud forest: Effects of disturbance and altitude Pamela MEDINA-VAN BERKUM & OTROS 70 Ecnomiohyla salvaje Hylidae (Wilson, McCranie & Williams 1985) in Cusuco 89 National Park, Honduras: Applying Species Distribution morphological descriptions Models to identify areas of of adults and metamorphs high conservation value for with notes on ecology, terrestrial mammals: A case natural history, and the study in Cusuco National conservation implications Park, Honduras of amphibian chytrid HANNAH M.J. HOSKINS & OTROS fungus (Bd) Cameron THORP & OTROS 111 Pioneering a fungal inventory at Cusuco National Park, Honduras DANNY HAELEWATERS & otros Editor It is my privilege to present the inaugural issue of the action in a highly threatened Mesoamerican cloud Journal of Mesoamerican Biology, a new and inde- forest,” which sets the stage for the rest of the is- pendent journal published by the Instituto de Inves- sue and indeed for future research and conservation tigación en Ciencias Biologicas y Ambientales del initiatives in the Merendón. -
Competing Sexual-Asexual Generic Names in Agaricomycotina (Basidiomycota) with Recommendations for Use Joost A
Stalpers et al. IMA Fungus (2021) 12:22 https://doi.org/10.1186/s43008-021-00061-3 IMA Fungus NOMENCLATURE Open Access Competing sexual-asexual generic names in Agaricomycotina (Basidiomycota) with recommendations for use Joost A. Stalpers1, Scott A. Redhead2, Tom W. May3, Amy Y. Rossman4* , Jo Anne Crouch5, Marc A. Cubeta6, Yu-Cheng Dai7, Roland Kirschner8, Gitta Jutta Langer9, Karl-Henrik Larsson10, Jonathan Mack2, Lorelei L. Norvell11, Franz Oberwinkler12ˆ, Viktor Papp13, Peter Roberts14, Mario Rajchenberg15,16, Keith A. Seifert17 and R. Greg Thorn18 Abstract With the change to one scientific name for fungal taxa, generic names typified by species with sexual or asexual morph types are being evaluated to determine which names represent the same genus and thus compete for use. In this paper generic names of the Agaricomycotina (Basidiomycota) were evaluated to determine synonymy based on their type. Forty-seven sets of sexually and asexually typified names were determined to be congeneric and recommendations are made for which generic name to use. In most cases the principle of priority is followed. However, 16 generic names are recommended for use that do not have priority and thus need to be protected: Aleurocystis over Matula; Armillaria over Acurtis and Rhizomorpha; Asterophora over Ugola; Botryobasidium over Acladium, Allescheriella, Alysidium, Haplotrichum, Physospora, and Sporocephalium; Coprinellus over Ozonium; Coprinopsis over Rhacophyllus; Dendrocollybia over Sclerostilbum and Tilachlidiopsis; Diacanthodes over Bornetina; Echinoporia over Echinodia; Neolentinus over Digitellus; Postia over Ptychogaster; Riopa over Sporotrichum; Scytinostroma over Artocreas, Michenera, and Stereofomes; Tulasnella over Hormomyces; Typhula over Sclerotium; and Wolfiporia over Gemmularia and Pachyma. Nine species names are proposed for protection: Botryobasidium aureum, B. -
Basidiomycota, Agaricales) Based on a Multigene Phylogeny
Cryptogamie, Mycologie, 2014, 35 (4): 399-425 © 2014 Adac. Tous droits réservés Taxonomic revision and examination of ecological transitions of the Lyophyllaceae (Basidiomycota, Agaricales) based on a multigene phylogeny Valérie HOFSTETTERa*, Scott Alan REDHEADb#, Frank KAUFFc#, Jean-Marc MONCALVOd, Patrick Brandon MATHENYe & Rytas VILGALYSf aAgroscope Changins-Wädenswil, Institut des sciences en production végétale IPV, CP1012, 1260 Nyon1, Switzerland e-mail: [email protected] bNational Mycological Herbarium, Eastern Cereal and Oilseed Research Centre, Science and Technology Branch, Agriculture and Agri-Food Canada, Ottawa, Ontario, Canada K1A 0C6 cFachbereich Biologie, Abt. Molekulare Phylogenetik, Technische Universität Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany dDepartment of Natural History, Royal Ontario Museum, and Department of Ecology & Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada M5S 2C6 fDepartment of Ecology and Evolutionary Biology, University of Tennessee, Knoxville TN 37996-1610, USA gDepartment of Biology, Duke University, Durham, NC 27708, USA Abstract – We explored evolutionary relationships within the Lyophyllaceae by combining sequence data from six loci. The most likely phylogram led us to reconsider the Lyophyllaceae classification with the recognition of two new genera (Myochromella and Sagaranella) based on ecological and/or morphological distinctiveness. Lyophyllaceae are ecologically highly diversified and our phylogeny suggests that four to five ecological transitions from free-living to parasitic or mutualistic lifestyles have occurred within the family. Due to moderate phylogenetic support recovered for several relationships within that clade and due to the uncertainty about the ecological strategy adopted by five of the sampled species, three out of these transitions could be unequivocally reconstructed suggesting that saprotrophy is plesiomorphic for Lyophyllaceae. -
Arthromyces and Blastosporella, Two New Genera of Conidia-Producing Lyophylloid Argarics (Agaricales, Basidiomycota) from the Ne
mycological research 111 (2007) 572–580 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres Arthromyces and Blastosporella, two new genera of conidia-producing lyophylloid agarics (Agaricales, Basidiomycota) from the neotropics Timothy J. BARONIa,*, Ana Esperanza FRANCO-MOLANOb, D. Jean LODGEc, Daniel L. LINDNERd, Egon HORAKe, Valerie HOFSTETTERf aDepartment of Biological Sciences, PO Box 2000, State University of New York, College at Cortland, Cortland, New York 13045, USA bLaboratorio de Taxonomı´a de Hongos, Instituto de Biologı´a, Universidad de Antioquia A.A.1226, Medellı´n, Colombia cCenter for Forest Mycology, USDA, Forest-Service, PO Box 1377, Luquillo 00773-1377, Puerto Rico dUSDA-FS Forest Products Laboratory, Center for Forest Mycology Research, One Gifford Pinchot Dr., Madison, WI 53726-2398, USA ec/o Herbarium, Geobotany, ETHZ, Universitaetsstrasse 16, CH-8092 Zurich, Switzerland fBotany Department, Duke University, Durham, NC 27708-0338, USA article info abstract Article history: Two new genera encompassing three new species of lyophylloid agarics that produce con Received 28 July 2006 idia on the basidiomata are described. Arthromyces is a genus comprised of two very differ Received in revised form ent arthrospore-producing mushroom species found in the Greater Antilles and Central 9 January 2007 America. Blastosporella is a monotypic genus with spherical balls of blastospores covering Accepted 6 March 2007 the pileus surface with age and is known from Hispaniola and Colombia. A key to the spe Published online 15 March 2007 cies of Arthromyces is included. Corresponding Editor: Michael Weiß ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.