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GENETIC ANALYSIS OF L - DOPA TRAIT IN MUCUNA PRURIENS (L.) DC. Submitted To Sikkim University In Partial Fulfilment of the Requirements for the Degree of Doctor of Philosophy By PANKAJ KUMAR TRIPATHI Department of Botany School of Life Sciences August 2018 Gangtok – 737102, Sikkim, India CERTIFICATE This is to certify that the Ph.D thesis entitled “GENETIC ANALYSIS OF L-DOPA TRAIT IN MUCUNA PRURIENS (L.) DC.” submitted to Sikkim University in partial fulfilment for the requirements of the degree of DOCTOR OF PHILOSOPHY in Botany embodies the research work carried out by Mr. PANKAJ KUMAR TRIPATHI at the Department of Botany, School of Life Sciences, Sikkim University. It is a record of bona fide investigation carried out and completed by him under my supervision. He has followed the rules and regulations prescribed by the University. The results are original and have not been submitted anywhere else for any other degree or diploma. It is recommended that this Ph.D thesis be placed before the examiners for the evaluation. PROF. N. SATHYANARAYANA Ph.D Supervisor Department of Botany School of Life Sciences Sikkim University, Gangtok Place: Gangtok Date: 27/08/2018 i CERTIFICATE This is to certify that the Ph.D thesis entitled “GENETIC ANALYSIS OF L-DOPA TRAIT IN MUCUNA PRURIENS (L.) DC.” submitted to Sikkim University in partial fulfilment for the requirements of the degree of DOCTOR OF PHILOSOPHY in Botany embodies the research work carried out by Mr. PANKAJ KUMAR TRIPATHI at the Department of Botany, School of Life Sciences, Sikkim University under the supervision of Prof. N. Sathyanarayana. The results are original and have not been submitted anywhere else for any other degree or diploma. It is recommended that this Ph.D thesis be placed before the examiners for the evaluation. DR. DHANI RAJ CHHETRI Head, Dept. of Botany School of Life Sciences Sikkim University, Gangtok Place: Gangtok Date: 27/08/2018 ii DECLARATION I declare that the present Ph.D thesis entitled “GENETIC ANALYSIS OF L-DOPA TRAIT IN MUCUNA PRURIENS (L.) DC.” submitted by me for the award of the degree of DOCTOR OF PHILOSOPHY (BOTANY) is a bona fide research work carried out be me at the Department of Botany, Sikkim University under the supervision of Prof. N. Sathyanarayana. The thesis contains no material which has been accepted for a degree or diploma of any other University or Institution, except by way of background information and duly acknowledged in the thesis, and to the best of my knowledge and belief no material previously published or written by another person except where due acknowledgement is made in the text of the thesis, nor does the thesis contain any material that infringes copyright. PANKAJ KUMAR TRIPATHI Registration No.: 13SU12337 Ph.D Scholar Department of Botany School of Life Sciences Sikkim University, Gangtok Place: Gangtok Date: 27/08/2018 iii Date: 27/08/2018 PLAGIARISM CHECK CERTIFICATE This is to certify that the plagiarism check has been carried out for the following Ph.D thesis with help of URKUND SOFTWARE. “GENETIC ANALYSIS OF L - DOPA TRAIT IN MUCUNA PRURIENS (L.) DC.” The result is within the permissible limit decided by the Sikkim University. PANKAJ KUMAR TRIPATHI Ph.D student PROF. N. SATHYANARAYANA Research Supervisor iv ACKNOWLEDGEMENTS First and foremost, I owe my whole-hearted thanks to Lord Almighty who has provided so many helping hands to complete this piece of work successfully. I would like to convey my deep sense of gratitude and sincere thanks to my guide Prof N. Sathyanarayana, Department of Botany, Sikkim University for his expert guidance, sustained thought, encouragement, timely suggestion and invaluable help during the course of this study and in the preparation of the thesis. In spite of his many other commitments, he used to review my thesis progress, gave his valuable suggestions and made corrections. I wish to express my sincere thanks to Dr. Dhani Raj Chhetri, Head, Department of Botany, Sikkim University for support and facilities provided in completing the present investigation. I also thank all the faculty members of the Department of Botany for their timely help during the course of my research work. My sincere thanks to Hon. Vice-Chancellor, Sikkim University for providing lab facilities and botanical garden for my research work. I extend my profound gratitude to the authorities of Sikkim University for the award of UGC Non-NET Fellowship. I express my sincere thanks to Science and Engineering Research Board (SERB), Govt. of India, New Delhi for providing financial support in the form of Senior Research Fellowship under the Project “DNA fingerprinting of important germplasm, assessment of genetic diversity and identification of elite parental lines for trait specific breeding in velvet bean (M. pruriens)” undertaken by Prof. N. Sathyanarayana. I express my whole hearted thanks and gratefulness to Prof. T. S. Rana, Senior Principal Scientist, CSIR-National Botanical Research Institute (NBRI), Lucknow for his invaluable help in AFLP analysis. I sincerely thank Dr. S. N. Jena, Senior Scientist and Mr. Ravi Prakash Shukla, Ph. D Scholar, CSIR-NBRI, Lucknow for their help in AFLP analysis. v I also thank Dr. Biswajeet Gopal Roy, Assistant Professor, Department of Chemistry, Sikkim University for his help in L-Dopa analysis. I express my cheerful thanks to Mr. Deepak Chettri and Mr. Roshan Rai, Dept. of Botany, Sikkim University for their help all throughout my study. Mr. Pittala Ranjith Kumar who was my colleague, friend and roommate shared precious time with me and helped greatly in experiment designing, field work and survey. I sincerely thank him for his support both in professional and personal matters. I also thank Mr. Sai Sundeep Y who helped me in survey and collection. I consider it as a pleasure to express my deep sense of gratitude to my friends - Dawa Lhendup Lepcha, Nima Tshering Lepcha, Patrush Lepcha, Aditya Pradhan, Shubhakar Gurung, Ashish Rai, Hemant Sharma, Aita Rani Subba, Alice Rachel Subba, Raksha Mukhia, Puja Shashankar and Abhijeet Chhetri. My sincere thanks are also due to my friends Mr. Bhusan Gurung, Mr. Lalit Chaurasia and Mr. Ishfaq Nabi for their helping hand. I thank Hostel warden, Sikkim University who made my stay in the hostel most comfortable. I also extend my thanks to the authors of the research articles referred during this research work. I thank all my teachers and friends who have come across in this journey of my research career directly or indirectly. I find no words to express my sincere thanks to Ms. Poonam Mishra for her moral support and encouragement throughout the course of my research work. Last but not the least, my beloved parents and sisters; honestly I am lucky to have you in all my odds as well as happy experiences throughout my life. Your moral support, love and care turned out to be my blessings and I owe a great deal of gratitude in this journey to all of you. Once again I whole heartedly thank one and all who are responsible for completion of my Ph. D work directly or indirectly. (PANKAJ KUMAR TRIPATHI) vi CONTENTS Page No. Certificate from the Supervisor i Certificate from Head of the Department ii Declaration iii Plagiarism check certificate iv Acknowledgements v-vi Contents vii-viii List of Tables ix-xi List of Figures xii-xiii Abbreviations xiv-xvi Symbols xvii Chapters 1. General Introduction 1 1.1 Medicinal plants in healthcare 1-3 1.2 Genetic improvement of medicinal plants 3-6 1.3 Medicinal legumes 6-7 1.4 An overview of Mucuna pruriens (L.) DC 8-11 1.5 L-Dopa - The key secondary metabolite 12-16 1.6 Genetic studies 16 1.7 Micropropagation of elite genotypes 16-17 1.8 Amplified Fragment Length Polymorphism (AFLP) markers 17 2. Review of Literature 18 2.1 Medicinal legume Mucuna pruriens (L.) DC. 18-25 2.2 L-Dopa: Distribution and variability 26-28 2.3 Genetic diversity estimation 29-32 2.4 Genetic studies on L-Dopa and other traits 32-33 2.5 Micropropagation 34-36 3. Objectives 37 vii 4. Materials and Methods 38 4.1 Germplasm collection and characterization 38-44 4.2 Assessment of L-Dopa variability 44-46 4.3 Genetic diversity analysis 47-53 4.4 Genetic analysis of L-Dopa trait 54-58 4.5 Micropropagation of elite genotypes 58-60 5. Results 61 5.1 Germplasm collection and characterization 61-87 5.2 L-Dopa variability and correlation with seed traits 88-91 5.3 Genetic diversity analysis 91-98 5.4 Genetic analysis of L-Dopa trait 98-111 5.5 Micropropagation of elite genotypes 112-115 6. Discussions 116 6.1 Germplasm collection and characterization 116-121 6.2 L-Dopa variability and correlation with seed traits 121-122 6.3 Genetic diversity analysis 122-128 6.4 Genetic analysis of L-Dopa trait 128-131 6.5 Micropropagation of elite genotypes 131-134 7. Summary and Conclusions 135-138 8. Future Prospects 139 9. Bibliography 140-192 10. Publications viii List of Tables Page No. Table- 1 High value drugs derived from medicinal plants 2 Table- 2 Botanical classification of M. pruriens (L.) DC. 8 Table- 3 General characters of M. pruriens 9 Table- 4 Constituents of M. pruriens supporting 11 anti-parkinsonian activity Table- 5 Source of L-Dopa in plants 13 Table- 6 Distribution of L-Dopa in Mucuna species 27 Table- 7 List of descriptors used for M. pruriens characterization 41-42 Table- 8 List of M. pruriens accessions collected 48-49 from northeastern region of India Table- 9a Details of pre-selective primer used 53 for AFLP analysis Table- 9b Details of selective primers used 53 for AFLP analysis Table- 10 L-Dopa content among different parental 54 combinations used for crossing Table- 11 Variability for different qualitative characters 64 Table- 12 Pearson’s correlation analysis for 10 66 qualitative characters Table- 13 Euclidean distance between different AHC classes 68 Table- 14 Affiliation of accessions among different 68-69 AHC classes Table- 15a Descriptive statistics of six yield based traits in 73 50 M.