Genetic Diversity and Phenotypic Variation of an Alexandrium
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The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
The Windblown: Possible Explanations for Dinophyte DNA
bioRxiv preprint doi: https://doi.org/10.1101/2020.08.07.242388; this version posted August 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. The windblown: possible explanations for dinophyte DNA in forest soils Marc Gottschlinga, Lucas Czechb,c, Frédéric Mahéd,e, Sina Adlf, Micah Dunthorng,h,* a Department Biologie, Systematische Botanik und Mykologie, GeoBio-Center, Ludwig- Maximilians-Universität München, D-80638 Munich, Germany b Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, D- 69118 Heidelberg, Germany c Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA d CIRAD, UMR BGPI, F-34398, Montpellier, France e BGPI, Université de Montpellier, CIRAD, IRD, Montpellier SupAgro, Montpellier, France f Department of Soil Sciences, College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, S7N 5A8, SK, Canada g Eukaryotic Microbiology, Faculty of Biology, Universität Duisburg-Essen, D-45141 Essen, Germany h Centre for Water and Environmental Research (ZWU), Universität Duisburg-Essen, D- 45141 Essen, Germany Running title: Dinophytes in soils Correspondence M. Dunthorn, Eukaryotic Microbiology, Faculty of Biology, Universität Duisburg-Essen, Universitätsstrasse 5, D-45141 Essen, Germany Telephone number: +49-(0)-201-183-2453; email: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2020.08.07.242388; this version posted August 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Morphological, Molecular, and Toxin Analysis of Field Populations of Alexandrium Genus from the Argentine Sea1
J. Phycol. 53, 1206–1222 (2017) © 2017 Phycological Society of America DOI: 10.1111/jpy.12574 MORPHOLOGICAL, MOLECULAR, AND TOXIN ANALYSIS OF FIELD POPULATIONS OF ALEXANDRIUM GENUS FROM THE ARGENTINE SEA1 Elena Fabro,2 Gaston O. Almandoz, Martha Ferrario Division Ficologıa, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, Paseo del Bosque s/n (B1900FWA), La Plata, Argentina Consejo Nacional de Investigaciones Cientıficas y Tecnicas (CONICET), Buenos Aires, Argentina Uwe John, Urban Tillmann , Kerstin Toebe, Bernd Krock and Allan Cembella Alfred Wegener Institut-Helmholtz Zentrum fur€ Polar- und Meeresforschung, Am Handelshafen 12, 27570 Bremerhaven, Germany In the Argentine Sea, blooms of toxigenic Abbreviations: APC, apical pore complex; GTX, dinoflagellates of the Alexandrium tamarense species gonyautoxin(s); LC-FD, liquid chromatography with complex have led to fish and bird mortalities and fluorescence detection; LC-MS/MS, liquid chro- human deaths as a consequence of paralytic shellfish matography coupled to tandem mass spectrometry; poisoning (PSP). Yet little is known about the NeoSTX, neosaxitoxin; Po, apical pore plate; PSP, occurrence of other toxigenic species of the genus paralytic shellfish poisoning; PST, paralytic shellfish Alexandrium, or of their toxin composition beyond toxin(s); Sa, anterior sulcal plate; Sp, posterior coastal waters. The distribution of Alexandrium sulcal plate; SPX, spirolide(s); STX, saxitoxin; vp, species and related toxins in the Argentine Sea was ventral pore determined by sampling surface waters on an oceanographic expedition during austral spring from ~39°Sto48°S. Light microscope and SEM analysis for species identification and enumeration Among toxic marine dinoflagellates, the genus was supplemented by confirmatory PCR analysis Alexandrium is one of the best studied because of its from field samples. -
Morphological Observation of Alexandrium Tamarense (Lebour) Balech, A
Algae Volume 17(1): 11-19, 2002 Morphological Observation of Alexandrium tamarense (Lebour) Balech, A. catenella (Whedon et Kofoid) Balech and One Related Morphotype (Dinophyceae) in Korea Keun-Yong Kim*, Matoko Yoshida1, Yasuwo Fukuyo2 and Chang-Hoon Kim Department of Aquaculture, Pukyong National University, Busan 608-737, Korea 1Laboratory of Coastal Environmental Sciences, Faculty of Fisheries, Nagasaki University, Nagasaki 852-8521 and 2Asian National Environmental Science Center, The University of Tokyo, Tokyo 113-8657, Japan Twenty-nine culture strains belonging to the genus Alexandrium Halim (Dinophyceae) were established from water column or sediments in Korea. Seventeen isolates were identified as A. tamarense (Lebour) Balech, eight iso- lates as A. sp. cf. catenella and one as A. catenella (Whedon et Kofoid) Balech according to the presence or absence of a ventral pore, the shape of the posterior sulcal plate and the sulcal width. Three isolates were unable to be identi- fied due to considerable distortion of thecal plates and lack of enough materials, but typical of A. tamarense and/or A. catenella. The overall cell shape of A. tamarense was usually longer than wide. The posterior sulcal plate was defi- nitely longer than wide dorsoventrally, and sulcus extended posteriorly without apparent widening. They were dis- tributed in three major coasts of Korea. In contrast, the cell shape of A. sp. cf. catenella was generally anterior-posteri- orly flattened. The transversal axis of the posterior sulcal plate was always longer than the longitudinal, or both axes were nearly equal in length. Its sulcus was broader than that of A. tamarense and widened in the direction of antapex about 1.5 times. -
The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
The ISME Journal (2020) 14:544–559 https://doi.org/10.1038/s41396-019-0542-5 ARTICLE The planktonic protist interactome: where do we stand after a century of research? 1 1 1 1 Marit F. Markussen Bjorbækmo ● Andreas Evenstad ● Line Lieblein Røsæg ● Anders K. Krabberød ● Ramiro Logares 1,2 Received: 14 May 2019 / Revised: 17 September 2019 / Accepted: 24 September 2019 / Published online: 4 November 2019 © The Author(s) 2019. This article is published with open access Abstract Microbial interactions are crucial for Earth ecosystem function, but our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2500 ecological interactions from ~500 publications, spanning the last 150 years. All major protistan lineages were involved in interactions as hosts, symbionts (mutualists and commensalists), parasites, predators, and/or prey. Predation was the most common interaction (39% of all records), followed by symbiosis (29%), parasitism (18%), and ‘unresolved interactions’ fi 1234567890();,: 1234567890();,: (14%, where it is uncertain whether the interaction is bene cial or antagonistic). Using bipartite networks, we found that protist predators seem to be ‘multivorous’ while parasite–host and symbiont–host interactions appear to have moderate degrees of specialization. The SAR supergroup (i.e., Stramenopiles, Alveolata, and Rhizaria) heavily dominated PIDA, and comparisons against a global-ocean molecular survey (TARA Oceans) indicated that several SAR lineages, which are abundant and diverse in the marine realm, were underrepresented among the recorded interactions. -
Molecular Identification and Toxin Analysis of Alexandrium Spp
toxins Article Molecular Identification and Toxin Analysis of Alexandrium spp. in the Beibu Gulf: First Report of Toxic A. tamiyavanichii in Chinese Coastal Waters Yixiao Xu 1,2,* , Xilin He 1, Huiling Li 1, Teng Zhang 1, Fu Lei 3, Haifeng Gu 4 and Donald M. Anderson 5 1 Key Laboratory of Environment Change and Resources Use in Beibu Gulf, Ministry of Education, Nanning Normal University, Nanning 530001, China; [email protected] (X.H.); [email protected] (H.L.); [email protected] (T.Z.) 2 Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Guangxi University, Nanning 530004, China 3 Guangxi Key Laboratory of Marine Environmental Science, Beibu Gulf Marine Research Center, Guangxi Academy of Sciences, Nanning 530007, China; [email protected] 4 Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China; [email protected] 5 Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA; [email protected] * Correspondence: [email protected] Abstract: The frequency of harmful algal blooms (HABs) has increased in China in recent years. Information about harmful dinoflagellates and paralytic shellfish toxins (PSTs) is still limited in China, especially in the Beibu Gulf, where PSTs in shellfish have exceeded food safety guidelines on multiple occasions. To explore the nature of the threat from PSTs in the region, eight Alexandrium strains were isolated from waters of the Beibu Gulf and examined using phylogenetic analyses of large subunit (LSU) rDNA, small subunit (SSU) rDNA, and internal transcribed spacer (ITS) sequences. Their toxin composition profiles were also determined using liquid chromatography-tandem mass spectrometry Citation: Xu, Y.; He, X.; Li, H.; (LC-MS/MS). -
Biodiversity
BIODIVERSITY Edited by Adriano Sofo Biodiversity Edited by Adriano Sofo Published by InTech Janeza Trdine 9, 51000 Rijeka, Croatia Copyright © 2011 InTech All chapters are Open Access articles distributed under the Creative Commons Non Commercial Share Alike Attribution 3.0 license, which permits to copy, distribute, transmit, and adapt the work in any medium, so long as the original work is properly cited. After this work has been published by InTech, authors have the right to republish it, in whole or part, in any publication of which they are the author, and to make other personal use of the work. Any republication, referencing or personal use of the work must explicitly identify the original source. Statements and opinions expressed in the chapters are these of the individual contributors and not necessarily those of the editors or publisher. No responsibility is accepted for the accuracy of information contained in the published articles. The publisher assumes no responsibility for any damage or injury to persons or property arising out of the use of any materials, instructions, methods or ideas contained in the book. Publishing Process Manager Dragana Manestar Technical Editor Teodora Smiljanic Cover Designer Jan Hyrat Image Copyright Peter Leahy, 2010. Used under license from Shutterstock.com First published September, 2011 Printed in Croatia A free online edition of this book is available at www.intechopen.com Additional hard copies can be obtained from [email protected] Biodiversity, Edited by Adriano Sofo p. cm. ISBN 978-953-307-715-4 free online editions of InTech Books and Journals can be found at www.intechopen.com Contents Preface VII Part 1 Ecosystem-Level Biodiversity 1 Chapter 1 Integrating Spatial Behavioral Ecology in Agent-Based Models for Species Conservation 3 Christina A.D. -
De Novo Transcriptome of the Non-Saxitoxin Producing Alexandrium Tamutum Reveals New Insights on Harmful Dinoflagellates
marine drugs Article De novo Transcriptome of the Non-saxitoxin Producing Alexandrium tamutum Reveals New Insights on Harmful Dinoflagellates Giorgio Maria Vingiani 1 ,Darta¯ Štalberga¯ 2 , Pasquale De Luca 3 , Adrianna Ianora 1, Daniele De Luca 4 and Chiara Lauritano 1,* 1 Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, CAP80121 Napoli, Italy; [email protected] (G.M.V.); [email protected] (A.I.) 2 Faculty of Medicine and Health Sciences, Linköping University, 58183 Linköping, Sweden; [email protected] 3 Research Infrastructure for Marine Biological Resources Department, Stazione Zoologica Anton Dohrn, Villa Comunale, CAP80121 Napoli, Italy; [email protected] 4 Department of Humanities, Università degli Studi Suor Orsola Benincasa, CAP80135 Naples, Italy; [email protected] * Correspondence: [email protected]; Tel.: +081-583-3221 Received: 26 May 2020; Accepted: 20 July 2020; Published: 24 July 2020 Abstract: Many dinoflagellates species, especially of the Alexandrium genus, produce a series of toxins with tremendous impacts on human and environmental health, and tourism economies. Alexandrium tamutum was discovered for the first time in the Gulf of Naples, and it is not known to produce saxitoxins. However, a clone of A. tamutum from the same Gulf showed copepod reproduction impairment and antiproliferative activity. In this study, the full transcriptome of the dinoflagellate A. tamutum is presented in both control and phosphate starvation conditions. RNA-seq approach was used for in silico identification of transcripts that can be involved in the synthesis of toxic compounds. Phosphate starvation was selected because it is known to induce toxin production for other Alexandrium spp. -
Morphological and Phylogenetic Data Do Not Support the Split of Alexandrium T Into Four Genera ⁎ Kenneth Neil Mertensa, , Masao Adachib, Donald M
Harmful Algae 98 (2020) 101902 Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Morphological and phylogenetic data do not support the split of Alexandrium T into four genera ⁎ Kenneth Neil Mertensa, , Masao Adachib, Donald M. Andersonc, Christine J. Band-Schmidtd, Isabel Bravoe, Michael L. Brosnahanc, Christopher J.S. Bolchf, António J. Caladog, M. Consuelo Carbonell-Mooreh, Nicolas Chomérata, Malte Elbrächteri, Rosa Isabel Figueroae, Santiago Fragaj, Ismael Gárate-Lizárragak, Esther Garcésl, Haifeng Gum, Gustaaf Hallegraeffn, Philipp Hesso, Mona Hoppenrathp, Takeo Horiguchiq, Mitsunori Iwatakir, Uwe Johns, Anke Krempt, Jacob Larsenu, Chui Pin Leawv, Zhun Liw, Po Teen Limv, Wayne Litakerx, Lincoln MacKenziey, Estelle Masseretz, Kazumi Matsuokaaa, Øjvind Moestrupu, Marina Montresorab, Satoshi Nagaiac, Elisabeth Nézana,ad, Tomohiro Nishimuray, Yuri B. Okolodkovae, Tatiana Yu. Orlovaaf, Albert Reñél, Nagore Sampedrol, Cecilia Teodora Sattaag, Hyeon Ho Shinah, Raffaele Sianoai, Kirsty F. Smithy, Karen Steidingeraj, Yoshihito Takanoak, Urban Tillmanns, Jennifer Wolnyal, Aika Yamaguchiq, Shauna Murrayam a Ifremer, LER BO, Station de Biologie Marine, Place de la Croix, BP40537, F-29185 Concarneau Cedex, France b Laboratory of Aquatic Environmental Science (LAQUES), Faculty of Agriculture and Marine Science, Kochi University, 200 Otsu, Monobe, Nankoku, Kochi 783-8502, Japan c Woods Hole Oceanographic Institution. Woods Hole, MA 02543, USA d Departamento de Plancton y Ecología Marina, Instituto -
Gene Duplication, Loss and Selection in the Evolution of Saxitoxin Biosynthesis in Alveolates Q ⇑ Shauna A
Molecular Phylogenetics and Evolution 92 (2015) 165–180 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Gene duplication, loss and selection in the evolution of saxitoxin biosynthesis in alveolates q ⇑ Shauna A. Murray a,b, , Rutuja Diwan a,b, Russell J.S. Orr c, Gurjeet S. Kohli a, Uwe John d a Plant Functional Biology and Climate Change Cluster, University of Technology Sydney, NSW 2007, Australia b Sydney Institute of Marine Science, Chowder Bay Rd, Mosman, NSW, Australia c Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, Norway d Section Ecological Chemistry, Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung, Bremerhaven, Germany article info abstract Article history: A group of marine dinoflagellates (Alveolata, Eukaryota), consisting of 10 species of the genus Received 9 March 2015 Alexandrium, Gymnodinium catenatum and Pyrodinium bahamense, produce the toxin saxitoxin and its Revised 1 June 2015 analogues (STX), which can accumulate in shellfish, leading to ecosystem and human health impacts. Accepted 25 June 2015 The genes, sxt, putatively involved in STX biosynthesis, have recently been identified, however, the evo- Available online 30 June 2015 lution of these genes within dinoflagellates is not clear. There are two reasons for this: uncertainty over the phylogeny of dinoflagellates; and that the sxt genes of many species of Alexandrium and other Keywords: dinoflagellate genera are not known. Here, we determined the phylogeny of STX-producing and other Alexandrium dinoflagellates based on a concatenated eight-gene alignment. We determined the presence, diversity Saxitoxin sxtA and phylogeny of sxtA, domains A1 and A4 and sxtG in 52 strains of Alexandrium, and a further 43 species sxtG of dinoflagellates and thirteen other alveolates. -
Alexandrium Tamarense
Characterization of grazer‐induced responses in the marine dinoflagellate Alexandrium tamarense Sylke Wohlrab Dissertation zur Erlangung des Akademischen Grades eines Doktors der Naturwissenschaften ‐ Dr. rer. Nat.‐ im Fachbereich 2 (Biologie & Chemie) der Universität Bremen vorgelegt von Sylke Wohlrab 2013 1. Gutachter: Prof. Dr. Allan Cembella Alfred-Wegener-Institut für Polar- und Meeresforschung Bremerhaven Universität Bremen 2. Gutachter: Prof. Dr. Ralph Tollrian Lehrstuhl für Evolutionsökologie und Biodiversität der Tiere Ruhr-Universität Bochum CONTENTS Table of Contents Erklärung gemäß § 6 (5) .............................................................................................................I Danksagung ................................................................................................................................ II Summary .................................................................................................................................... III Zusammenfassung ................................................................................................................... VI Abbreviations ............................................................................................................................ IX 1. Introduction ........................................................................................................................ 1 1.1 Species Interactions ................................................................................................... 1 1.2 Top-down -
Association of the Gonyaulacoid Dinoflagellate Alexandrium
NRC Publications Archive Archives des publications du CNRC Association of the gonyaulacoid dinoflagellate Alexandrium ostenfeldii with spirolide toxins in size-fractionated plankton Cembella, Allan D.; Bauder, Andrew G.; Lewis, Nancy I.; Quilliam, Michael A. This publication could be one of several versions: author’s original, accepted manuscript or the publisher’s version. / La version de cette publication peut être l’une des suivantes : la version prépublication de l’auteur, la version acceptée du manuscrit ou la version de l’éditeur. For the publisher’s version, please access the DOI link below./ Pour consulter la version de l’éditeur, utilisez le lien DOI ci-dessous. Publisher’s version / Version de l'éditeur: https://doi.org/10.1093/plankt/23.12.1413 Journal of Plankton Research, 23, 12, pp. 1413-1419, 2001 NRC Publications Record / Notice d'Archives des publications de CNRC: https://nrc-publications.canada.ca/eng/view/object/?id=57cc4bfc-4a07-478f-a1ea-bc82b4ccda58 https://publications-cnrc.canada.ca/fra/voir/objet/?id=57cc4bfc-4a07-478f-a1ea-bc82b4ccda58 Access and use of this website and the material on it are subject to the Terms and Conditions set forth at https://nrc-publications.canada.ca/eng/copyright READ THESE TERMS AND CONDITIONS CAREFULLY BEFORE USING THIS WEBSITE. L’accès à ce site Web et l’utilisation de son contenu sont assujettis aux conditions présentées dans le site https://publications-cnrc.canada.ca/fra/droits LISEZ CES CONDITIONS ATTENTIVEMENT AVANT D’UTILISER CE SITE WEB. Questions? Contact the NRC Publications Archive team at [email protected]. If you wish to email the authors directly, please see the first page of the publication for their contact information.