Cell: the Unit of Life 8.1 What Is a Cell?
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Chloroplast Transit Peptides: Structure, Function and Evolution
reviews Chloroplast transit Although the first demonstration of precursor trans- port into chloroplasts was shown over two decades peptides: structure, ago3,4, only now is this area of cell biology becom- ing well understood. Many excellent reviews have been published recently on the evolution of plas- function and tids5, the evolution of organelle genomes6, the mechanism of gene transfer from organelles to the nucleus7 and the mechanism of protein import into evolution chloroplasts8,9. Proteins destined to plastids and other organ- elles share in common the requirement for ‘new’ Barry D. Bruce sequence information to facilitate their correct trafficking within the cell. Although in most cases this information resides in a cleavable, N-terminal sequence often collectively referred to as signal It is thought that two to three thousand different proteins are sequence, the different organelle-targeting se- targeted to the chloroplast, and the ‘transit peptides’ that act as quences have distinct properties and names: ‘signal peptides’ for the endoplasmic reticulum, chloroplast targeting sequences are probably the largest class of ‘presequences’ for the mitochondria and ‘transit peptides’ for chloroplasts and other plastids. This targeting sequences in plants. At a primary structural level, transit review focuses on recent progress in dissecting peptide sequences are highly divergent in length, composition and the role of the stromal-targeting domain of chloro- plast transit peptides. I will consider briefly the organization. An emerging concept suggests that transit peptides multitude of distinct functions that transit peptides contain multiple domains that provide either distinct or overlapping perform, provide an update on the limited struc- tural information of a number of transit peptides functions. -
Centrosome-Nuclear Envelope Tethering and Microtubule Motor
bioRxiv preprint doi: https://doi.org/10.1101/442368; this version posted October 12, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Centrosome-nuclear envelope tethering and microtubule motor-based pulling forces collaborate in centrosome positioning during mitotic entry Vincent Boudreau1, Richard Chen1, Alan Edwards1, Muhammad Sulaimain1, Paul S. Maddox1* 1 Department of Biology, University of North Carolina at Chapel Hill * Direct all correspondence to this author at [email protected]. Centrosome positioning relative to the nucleus and cell nuclear envelope and at the cortex to ensure proper centrosome shape is highly regulated across cell types, during cell migration positioning (De Simone et al., 2016). Dynein regulators including and during spindle formation in cell division. Across most sexual- LIS-1 are also required for centrosome separation in the embryo ly reproducing animals, centrosomes are provided to the oocyte (Cockell et al., 2004), although their spatio-temporal contributions through fertilization and must be positioned properly to establish remain elusive. Despite our understanding of microtubule cyto- the zygotic mitotic spindle. How centrosomes are positioned in skeleton-based pulling forces, the contribution of key mitotic kinas- space and time through the concerted action of key mitotic en- es and phosphatases to centrosome positioning remains unclear. try biochemical regulators including Protein Phosphatase 2A The net effect of molecular regulators is a biophysical (PP2A-B55/SUR-6), biophysical regulators including Dynein mechanism required for positioning centrosomes during mitotic and the nuclear lamina is unclear. -
Physical and Chemical Basis of Cytoplasmic Streaming
Annual Reviews www.annualreviews.org/aronline .4n~t Rev. Plant Physiol 1981. 32:205-36 Copyright© 1981by AnnualReviews In~ All rights reserved PHYSICAL AND CHEMICAL BASIS OF CYTOPLASMIC ~7710 STREAMING Nobur6 Kamiya Department of Cell Biology, National Institute for Basic Biology, Okazaki, 444 Japan CONTENTS INTRODUCTION........................................................................................................ 206 SHUTI’LE STREAMINGIN THE MYXOMYCETEPLASMODIUM ................ 207 General...................................................................................................................... 207 ContractileProperties of the PlasmodialStrand ...................................................... 208 Activationcaused by stretching .................................................................................. 208 Activationcaused by loading .................................................................................... 209 Synchronizationof local ,hythms .............................................................................. 209 ContractileProteins .................................................................................................. 210 Plasmodiumactomyosin .......................................................................................... 210 Plusmodiummyosin ................................................................................................ 210 Plusmodiumactin.................................................................................................... 211 -
Overview of the Cytoskeleton from an Evolutionary Perspective
Downloaded from http://cshperspectives.cshlp.org/ on October 1, 2021 - Published by Cold Spring Harbor Laboratory Press Overview of the Cytoskeleton from an Evolutionary Perspective Thomas D. Pollard1 and Robert D. Goldman2 1Departments of Molecular Cellular and Developmental Biology, Molecular Biophysics and Biochemistry, and Cell Biology ,Yale University, New Haven, Connecticut 06520-8103 2Department of Cell and Molecular Biology, Northwestern University Feinberg School of Medicine, Chicago, Illinois 60611 Correspondence: [email protected] SUMMARY Organisms in the three domains of life depend on protein polymers to form a cytoskeleton that helps to establish their shapes, maintain their mechanical integrity, divide, and, in many cases, move. Eukaryotes have the most complex cytoskeletons, comprising three cytoskeletal poly- mers—actin filaments, intermediate filaments, and microtubules—acted on by three families of motor proteins (myosin, kinesin, and dynein). Prokaryotes have polymers of proteins ho- mologous to actin and tubulin but no motors, and a few bacteria have a protein related to intermediate filament proteins. Outline 1 Introduction—Overview of cellular 4 Overview of the evolution of the cytoskeleton functions 5 Conclusion 2 Structures of the cytoskeletal polymers References 3 Assembly of cytoskeletal polymers Editors: Thomas D. Pollard and Robert D. Goldman Additional Perspectives on The Cytoskeleton available at www.cshperspectives.org Copyright # 2018 Cold Spring Harbor Laboratory Press; all rights reserved; doi: 10.1101/cshperspect.a030288 Cite this article as Cold Spring Harb Perspect Biol 2018;10:a030288 1 Downloaded from http://cshperspectives.cshlp.org/ on October 1, 2021 - Published by Cold Spring Harbor Laboratory Press T.D. Pollard and R.D. Goldman 1 INTRODUCTION—OVERVIEW OF CELLULAR contrast, intermediate filaments do not serve as tracks for FUNCTIONS molecular motors (reviewed by Herrmann and Aebi 2016) but, rather, are transported by these motors. -
Introduction to the Cell Cell History Cell Structures and Functions
Introduction to the cell cell history cell structures and functions CK-12 Foundation December 16, 2009 CK-12 Foundation is a non-profit organization with a mission to reduce the cost of textbook materials for the K-12 market both in the U.S. and worldwide. Using an open-content, web-based collaborative model termed the “FlexBook,” CK-12 intends to pioneer the generation and distribution of high quality educational content that will serve both as core text as well as provide an adaptive environment for learning. Copyright ©2009 CK-12 Foundation This work is licensed under the Creative Commons Attribution-Share Alike 3.0 United States License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/us/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA. Contents 1 Cell structure and function dec 16 5 1.1 Lesson 3.1: Introduction to Cells .................................. 5 3 www.ck12.org www.ck12.org 4 Chapter 1 Cell structure and function dec 16 1.1 Lesson 3.1: Introduction to Cells Lesson Objectives • Identify the scientists that first observed cells. • Outline the importance of microscopes in the discovery of cells. • Summarize what the cell theory proposes. • Identify the limitations on cell size. • Identify the four parts common to all cells. • Compare prokaryotic and eukaryotic cells. Introduction Knowing the make up of cells and how cells work is necessary to all of the biological sciences. Learning about the similarities and differences between cell types is particularly important to the fields of cell biology and molecular biology. -
Principles of Human Anatomy
Principles of Cells Human Anatomy Cells are the basic living structural, Eleventh Edition functional unit of the body Gerard J. Tortora Cytology is the branch of science that & studies cells Mark T. Nielsen The human body has 100 trillion cells 200 CHAPTER 2 different cell types with a variety of Cells shapes, sizes and functions. Copyright © 2007 by John Wiley & Sons, Inc. Cell Diversity Generalized Cell Sizes (diameter) Ovum – 140 µm RBC – 8 µm Major parts of a cell µm = 1/10,000 of a cm Shapes Plasma membrane Flat Cytoplasm Oval Cubed Organelles Star shaped Elongated Inclusions Concave Structures Flagella Cilia Microvilli Fluid mosaic model of the plasma membrane Membrane Lipids Phospholipids – 75% Lipid bilayer Glycolipids – 5% Self recognition Cholesterol – 20% Maintains integrity Maintains fluidity Membrane Proteins Functions of the Cell Membrane Integral proteins Extend across the Communication phospholipid bilayer Shape & protection Channels Pores Maintains the electrochemical gradient Receptors Electrical separation of charge Transporters Enzymes Chemical (concentration gradient) Peripheral proteins Selective permeability Loosely attached to inner or outer surface Some substances easily travel across the Enzymes membrane and others do not Cytoskeletal anchors Membrane Transport Membrane Transport Active transport (uses ATP) Passive transport (kinetic energy not ATP) Primary active transport Net diffusion Molecule mover hydrolyzes ATP Movement of molecules from [high] to [low] -
Some Considerations of Protoplasm
THE OHIO JOURNAL OF SCIENCE VOL. XXV MAY, 1925 No. 3 SOME CONSIDERATIONS OF PROTOPLASM. BRUCE FINK, Department of Botany, Miami University. One of the most fundamental problems in biological science is that which concerns protoplasm. Yet there is great diver- sity of opinion among biologists regarding what constitutes protoplasm and some doubt whether the term protoplasm is really worth retaining. In the present state of knowledge, protoplasm can not be defined in any terms of physical structure which will be accepted, without qualification, by a majority of botanists, and can only be defined somewhat more satis- factorily in terms of colloidal chemistry. Again, though chemi- cal definition is somewhat more certain than physical, this alone is far from satisfactory to those who think of cell con- tents in terms of microscopic structure. It is sometimes stated by certain biologists that proto- plasm is essentially alike in all organism. This may be true in the rough if we define in purely chemical terms; or if we content ourselves with the statement that protoplasm is the living substance of the cell, knowing not how much of the cell is alive, and, therefore, protoplasm. Turning to those very lowly organized plants, the bacteria, most of us will agree that the whole cell content, inclusive or exclusive of the vacuoles, composes the protoplasm. For higher fungi and for animals the situation is about the same, except that definite nuclei here replace the nuclear granules commonly supposed to exist in bacteria. Turning attention to higher green plants, we find that the cells are much more complex with respect to visible contents. -
The Cell-Theory: a Restatement, History, and Critique Part III
*57 The Cell-theory: A Restatement, History, and Critique Part III. The Cell as a Morphological Unit By JOHN R. BAKER (From the Department of Zoology and Comparative Anatomy, Oxford) SUMMARY A long time elapsed after the discovery of cells before they came to be generally regarded as morphological units. As a first step it was necessary to show that the cell-walls of plants were double and that cells could therefore be separated. The earliest advances in this direction were made by Treviranus (1805) and Link (1807). The idea of a cell was very imperfect, however, so long as attention was con- centrated on its wall. The first person who stated clearly that the cell-wall is not a necessary constituent was Leydig (1857). Subsequently the cell came to be regarded as a naked mass of protoplasm with a nucleus, and to this unit the name of protoplast was given. The true nature of the limiting membrane of the protoplast was discovered by Overton (1895). The plasmodesmata or connective strands that sometimes connect cells were prob- ably first seen by Hartig, in sieve-plates (1837). They are best regarded from the point of view of their functions in particular cases. They do not provide evidence for the view that the whole of a multicellular organism is basically a protoplasmic unit. Two or more nuclei in a continuous mass of protoplasm appear to have been seen for the first time in 1802, by Bauer. That an organism may consist wholly of a syn- cytium was discovered in i860, in the Mycetozoa. -
Intelligent Behaviors of Amoeboid Movement Based on Complex Dynamics of Soft Matter
REVIEW www.rsc.org/softmatter | Soft Matter Intelligent behaviors of amoeboid movement based on complex dynamics of soft matter Toshiyuki Nakagakiab and Robert D. Guyc Received 25th April 2007, Accepted 26th September 2007 First published as an Advance Article on the web 2nd November 2007 DOI: 10.1039/b706317m We review how soft matter is self-organized to perform information processing at the cell level by examining the model organism Physarum plasmodium. The amoeboid organism, Physarum polycephalum, in the class of true slime molds, exhibits the intelligent behavior of foraging in complex situations. When placed in a maze with food sources at two exits, the organism develops tubular structures with its body which connect the food sources along the shortest path so that the rates of nutrient absorption and intracellular communication are maximized. This intelligent behavior results from the organism’s control of a dynamic network through which mechanical and chemical information is transmitted. We review experimental studies that explore the development and adaptation of structures that make up the network. Recently a model of the dynamic network has been developed, and we review the formulation of this model and present some key results. The model captures the dynamics of existing networks, but it does not answer the question of how such networks form initially. To address the development of cell shape, we review existing mechanochemical models of the protoplasm of Physarum, present more general models of motile cells, and discuss how to adapt existing models to explore the development of intelligent networks in Physarum. 1. Introduction: intelligence at the cell level From a material science point of view, the cell is an exotic system in which nonliving materials act together to The cell is the elementary unit of all organisms. -
The Mechanics of Motility in Dissociated Cytoplasm
THE MECHANICS OF MOTILITY IN DISSOCIATED CYTOPLASM MICAH DEMBO Theoretical Biophysics, Theoretical Division, Los Alamos National Laboratory, Group T-10, Mail Stop K710, Los Alamos, New Mexico 87545 ABSTRACT We stimulate the dynamical behavior of dissociated cytoplasm using the Reactive Flow Model (Dembo, M., and F. Harlow, 1986, Biophys. J., 50:109-121). We find that for the most part the predicted dynamical behavior of the cytoplasm is governed by three nondimensional numbers. Several other nondimensional parameters, the initial conditions, and boundary conditions are found to have lesser effects. Of the three major nondimensional parameters, one (D#) controls the percentage of ectoplasm, the second (CO) controls the sharpness of the endoplasm-ectoplasm boundary, and the third (R#) controls the topological complexity of the endoplasm-ectoplasm distribution. If R# is very small, then the cytoplasm contracts into a single uniform mass, and there is no bulk streaming. If R# is very large, then the cytoplasmic mass breaks up into a number of clumps scattered throughout the available volume. Between these clumps the solution undergoes turbulent or chaotic patterns of streaming. Intermediate values of R# can be found such that the mass of cytoplasm remains connected and yet undergoes coherent modes of motility similar to flares (Taylor, D.L., J.S. Condeelis, P.L. Moore, and R.D. Allen, 1973, J. Cell Biol., 59:378-394) and rosettes (Kuroda, K., 1979, Cell Motility: Molecules and Organization, 347-362). INTRODUCTION (Dembo et al., 1986). Here we will consider two experi- in which chemical reaction is an essential The reactive flow model is a putative description of motile mental systems fluid part of the dynamics. -
Centrosome Positioning in Vertebrate Development
Commentary 4951 Centrosome positioning in vertebrate development Nan Tang1,2,*,` and Wallace F. Marshall2,` 1Department of Anatomy, Cardiovascular Research Institute, The University of California, San Francisco, USA 2Department Biochemistry and Biophysics, The University of California, San Francisco, USA *Present address: National Institute of Biological Science, Beijing, China `Authors for correspondence ([email protected]; [email protected]) Journal of Cell Science 125, 4951–4961 ß 2012. Published by The Company of Biologists Ltd doi: 10.1242/jcs.038083 Summary The centrosome, a major organizer of microtubules, has important functions in regulating cell shape, polarity, cilia formation and intracellular transport as well as the position of cellular structures, including the mitotic spindle. By means of these activities, centrosomes have important roles during animal development by regulating polarized cell behaviors, such as cell migration or neurite outgrowth, as well as mitotic spindle orientation. In recent years, the pace of discovery regarding the structure and composition of centrosomes has continuously accelerated. At the same time, functional studies have revealed the importance of centrosomes in controlling both morphogenesis and cell fate decision during tissue and organ development. Here, we review examples of centrosome and centriole positioning with a particular emphasis on vertebrate developmental systems, and discuss the roles of centrosome positioning, the cues that determine positioning and the mechanisms by which centrosomes respond to these cues. The studies reviewed here suggest that centrosome functions extend to the development of tissues and organs in vertebrates. Key words: Centrosome, Development, Mitotic spindle orientation Introduction radiating out to the cell cortex (Fig. 2A). In some cases, the The centrosome of animal cells (Fig. -
Bathybius Haeckelii and the Psychology of Scientific Discovery
NICOLAAS A. RUPKE BATHYBIUS HAECKELII AND THE PSYCHOLOGY OF SCIENTIFIC DISCOVERY THEORY INSTEAD OF OBSERVED DATA CONTROLLED THE LATE 19th CENTURY ‘DISCOVERY’ OF A PRIMITIVE FORM OF LIFE THE TRADITIONAL image of the scientist as an objective fact finder has become seriously tarnished by recent work in the history and philosophy of science. ’ It is argued that the growth of science is not always brought about by a reasoned debate based on objective evidence. Instead, scientific discovery seems to be controlled quite as much by certain psychological factors such as respect for a theoretical superstructure. The debate around T. S. Kuhn’s The Structure of Scientific Revolutions has brought similar iconoclastic aspects of scientific conduct to the attention of a cross section of the scholarly community.’ Without wanting to enter into the controversy generated by Kuhn’s book,3 this paper records one of the better examples from the annals of science to show how respect for a theoretical superstructure brought about a fictitious discovery. Specifically, it records how confidence in the heuristic value of evolutionary theory in the second half of the 19th century produced the discovery of a fictitious primitive form of life, called Bathybius, its sub-division into two genera, its reported occur- rence over vast regions of the ocean floor, its identification in the geologic record, and its wide acceptance in the life and earth sciences for the period of almost a decade. Background to the ‘Discovery’ Shortly after the publication of Darwin’s The Ongin of Species (1859), 1 See review paper by S. G.