Protein Kinase C Pharmacology: Refining the Toolbox
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Hidden Targets in RAF Signalling Pathways to Block Oncogenic RAS Signalling
G C A T T A C G G C A T genes Review Hidden Targets in RAF Signalling Pathways to Block Oncogenic RAS Signalling Aoife A. Nolan 1, Nourhan K. Aboud 1, Walter Kolch 1,2,* and David Matallanas 1,* 1 Systems Biology Ireland, School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland; [email protected] (A.A.N.); [email protected] (N.K.A.) 2 Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland * Correspondence: [email protected] (W.K.); [email protected] (D.M.) Abstract: Oncogenic RAS (Rat sarcoma) mutations drive more than half of human cancers, and RAS inhibition is the holy grail of oncology. Thirty years of relentless efforts and harsh disappointments have taught us about the intricacies of oncogenic RAS signalling that allow us to now get a pharma- cological grip on this elusive protein. The inhibition of effector pathways, such as the RAF-MEK-ERK pathway, has largely proven disappointing. Thus far, most of these efforts were aimed at blocking the activation of ERK. Here, we discuss RAF-dependent pathways that are regulated through RAF functions independent of catalytic activity and their potential role as targets to block oncogenic RAS signalling. We focus on the now well documented roles of RAF kinase-independent functions in apoptosis, cell cycle progression and cell migration. Keywords: RAF kinase-independent; RAS; MST2; ASK; PLK; RHO-α; apoptosis; cell cycle; cancer therapy Citation: Nolan, A.A.; Aboud, N.K.; Kolch, W.; Matallanas, D. Hidden Targets in RAF Signalling Pathways to Block Oncogenic RAS Signalling. -
Table 2. Functional Classification of Genes Differentially Regulated After HOXB4 Inactivation in HSC/Hpcs
Table 2. Functional classification of genes differentially regulated after HOXB4 inactivation in HSC/HPCs Symbol Gene description Fold-change (mean ± SD) Signal transduction Adam8 A disintegrin and metalloprotease domain 8 1.91 ± 0.51 Arl4 ADP-ribosylation factor-like 4 - 1.80 ± 0.40 Dusp6 Dual specificity phosphatase 6 (Mkp3) - 2.30 ± 0.46 Ksr1 Kinase suppressor of ras 1 1.92 ± 0.42 Lyst Lysosomal trafficking regulator 1.89 ± 0.34 Mapk1ip1 Mitogen activated protein kinase 1 interacting protein 1 1.84 ± 0.22 Narf* Nuclear prelamin A recognition factor 2.12 ± 0.04 Plekha2 Pleckstrin homology domain-containing. family A. (phosphoinosite 2.15 ± 0.22 binding specific) member 2 Ptp4a2 Protein tyrosine phosphatase 4a2 - 2.04 ± 0.94 Rasa2* RAS p21 activator protein 2 - 2.80 ± 0.13 Rassf4 RAS association (RalGDS/AF-6) domain family 4 3.44 ± 2.56 Rgs18 Regulator of G-protein signaling - 1.93 ± 0.57 Rrad Ras-related associated with diabetes 1.81 ± 0.73 Sh3kbp1 SH3 domain kinase bindings protein 1 - 2.19 ± 0.53 Senp2 SUMO/sentrin specific protease 2 - 1.97 ± 0.49 Socs2 Suppressor of cytokine signaling 2 - 2.82 ± 0.85 Socs5 Suppressor of cytokine signaling 5 2.13 ± 0.08 Socs6 Suppressor of cytokine signaling 6 - 2.18 ± 0.38 Spry1 Sprouty 1 - 2.69 ± 0.19 Sos1 Son of sevenless homolog 1 (Drosophila) 2.16 ± 0.71 Ywhag 3-monooxygenase/tryptophan 5- monooxygenase activation protein. - 2.37 ± 1.42 gamma polypeptide Zfyve21 Zinc finger. FYVE domain containing 21 1.93 ± 0.57 Ligands and receptors Bambi BMP and activin membrane-bound inhibitor - 2.94 ± 0.62 -
Allosteric Activation of Functionally Asymmetric RAF Kinase Dimers
Allosteric Activation of Functionally Asymmetric RAF Kinase Dimers Jiancheng Hu,1,2 Edward C. Stites,1 Haiyang Yu,1 Elizabeth A. Germino,1 Hiruy S. Meharena,3,4 Philip J.S. Stork,6 Alexandr P. Kornev,3,4,5 Susan S. Taylor,3,4,5,* and Andrey S. Shaw1,2,* 1Department of Pathology and Immunology 2Howard Hughes Medical Institute Washington University School of Medicine, 660 South Euclid, Box 8118, St. Louis, MO 63110, USA 3Department of Chemistry/Biochemistry 4Department of Pharmacology 5Howard Hughes Medical Institute University of California San Diego, 9500 Gilman Drive, Mail code 0654, La Jolla, CA 92093, USA 6Vollum Institute, Oregon Health & Science University, 3181 SW Sam Jackson Park Road, Portland, OR 97239, USA *Correspondence: [email protected] (S.S.T.), [email protected] (A.S.S.) http://dx.doi.org/10.1016/j.cell.2013.07.046 SUMMARY There are three isoforms of RAF: A-RAF, B-RAF, and C-RAF. Each appears to have a distinct mechanism of activation (Baljuls Although RAF kinases are critical for controlling et al., 2007; Galabova-Kovacs et al., 2006; Wimmer and Baccar- cell growth, their mechanism of activation is incom- ini, 2010). BRAF is considered to be more active and have a pletely understood. Recently, dimerization was simpler mechanism of activation in comparison to CRAF and shown to be important for activation. Here we show ARAF (Chong et al., 2001; Rebocho and Marais, 2013; Zhang that the dimer is functionally asymmetric with one and Guan, 2000). This difference can potentially explain why kinase functioning as an activator to stimulate activ- BRAF mutations are so common in cancer, in contrast to CRAF and ARAF, where mutations are rarely found (Davies ity of the partner, receiver kinase. -
CDK4/6 Inhibitors in Melanoma: a Comprehensive Review
cells Review CDK4/6 Inhibitors in Melanoma: A Comprehensive Review Mattia Garutti 1,*, Giada Targato 2 , Silvia Buriolla 2 , Lorenza Palmero 1,2 , Alessandro Marco Minisini 2 and Fabio Puglisi 1,2 1 CRO Aviano National Cancer Institute IRCCS, 33081 Aviano, Italy; [email protected] (L.P.); [email protected] (F.P.) 2 Department of Medicine (DAME), University of Udine, 33100 Udine, Italy; [email protected] (G.T.); [email protected] (S.B.); [email protected] (A.M.M.) * Correspondence: [email protected] Abstract: Historically, metastatic melanoma was considered a highly lethal disease. However, recent advances in drug development have allowed a significative improvement in prognosis. In particular, BRAF/MEK inhibitors and anti-PD1 antibodies have completely revolutionized the management of this disease. Nonetheless, not all patients derive a benefit or a durable benefit from these therapies. To overtake this challenges, new clinically active compounds are being tested in the context of clinical trials. CDK4/6 inhibitors are drugs already available in clinical practice and preliminary evidence showed a promising activity also in melanoma. Herein we review the available literature to depict a comprehensive landscape about CDK4/6 inhibitors in melanoma. We present the molecular and genetic background that might justify the usage of these drugs, the preclinical evidence, the clinical available data, and the most promising ongoing clinical trials. Keywords: CDK4/6; CDK4; CDK6; melanoma; Palbociclib; Ribociclib; Abemaciclib Citation: Garutti, M.; Targato, G.; Buriolla, S.; Palmero, L.; Minisini, A.M.; Puglisi, F. CDK4/6 Inhibitors in Melanoma: A Comprehensive 1. Introduction Review. Cells 2021, 10, 1334. -
Draft Assessment Report on Chelidonium Majus L., Herba
25 November 2010 EMA/HMPC/369801/2009 Committee on Herbal Medicinal Products (HMPC) Assessment report on Chelidonium majus L., herba Based on Article 10a of Directive 2001/83/EC as amended (well-established use) Based on Article 16d(1), Article 16f and Article 16h of Directive 2001/83/EC as amended (traditional use) Draft Herbal substance(s) (binomial scientific name of Chelidonium majus L. the plant, including plant part) Dried whole or cut aerial parts of the plant Herbal preparation(s) Internal Use a) Chelidonii herba: comminuted b) Chelidonii tincture: 1:10 ethanol 45% (V/V) c) Chelidonii extractum fluidum: 1:1 ethanol 25% (V/V) d) Chelidonii extractum siccum (concentration not specified) e) Chelidonium majus mother tincture (M.T. (ø)) External Use a) Eye-drops: (preparation not specified) b) Ointment: (concentration not specified) Pharmaceutical forms Herbal preparation in solid or liquid dosage form or as a herbal tea for oral use. Herbal preparation in solid or liquid dosage form for external use. Rapporteur Assessor(s) 7 Westferry Circus ● Canary Wharf ● London E14 4HB ● United Kingdom Telephone +44 (0)20 7418 8400 Facsimile +44 (0)20 7523 7051 E-mail [email protected] Website www.ema.europa.eu An agency of the European Union © European Medicines Agency, 2011. Reproduction is authorised provided the source is acknowledged. Note: This Assessment Report is published to support the release for public consultation of the draft Community herbal monograph on Chelidonium majus L. It should be noted that this document is a working document, not yet fully edited, and which shall be further developed after the release for consultation of the monograph. -
KSR1- and ERK-Dependent Translational Regulation of 2 the Epithelial-To-Mesenchymal Transition
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.18.427224; this version posted January 21, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 KSR1- and ERK-dependent Translational Regulation of 2 the Epithelial-to-Mesenchymal Transition 3 Chaitra Rao1, Danielle E. Frodyma1, Siddesh Southekal2, Robert A. Svoboda3, Adrian R. Black1, 4 Chittibabu Guda2, Tomohiro Mizutani5, Hans Clevers5, Keith R. Johnson1,4, Kurt W. Fisher3, and 5 Robert E. Lewis1* 6 1 Eppley Institute, Fred & Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, NE 68198, USA. 7 2 Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE, University of 8 Nebraska Medical Center, Omaha, NE 68198, USA. 9 3 Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE 68198, USA. 10 4 Department of Oral Biology, University of Nebraska Medical Center, Omaha, NE 68198, USA 11 5 Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and UMC Utrecht, 3584CT Utrecht, The 12 Netherlands 13 *Correspondence: [email protected] 14 Abstract: 15 The epithelial-to-mesenchymal transition (EMT) is considered a transcriptional process 16 that induces a switch in cells from a polarized state to a migratory phenotype. Here we show that 17 KSR1 and ERK promote EMT through the preferential translation of Epithelial-Stromal 18 Interaction 1 (EPSTI1), which is required to induce the switch from E- to N-cadherin and 19 coordinate migratory and invasive behavior. -
Effects of Berberine, Chelerythrine, and Sanguinarine on Proliferation in Four Human Immortalized Cell Lines
Journal of the Iowa Academy of Science: JIAS Volume 119 Number 1-4 Article 6 2012 Effects of Berberine, Chelerythrine, and Sanguinarine on Proliferation in Four Human Immortalized Cell Lines David S. Senchina Drake University Nisarg B. Shah Drake University Marc G. Busch Drake University Let us know how access to this document benefits ouy Copyright © Copyright 2014 by the Iowa Academy of Science, Inc. Follow this and additional works at: https://scholarworks.uni.edu/jias Part of the Anthropology Commons, Life Sciences Commons, Physical Sciences and Mathematics Commons, and the Science and Mathematics Education Commons Recommended Citation Senchina, David S.; Shah, Nisarg B.; and Busch, Marc G. (2012) "Effects of Berberine, Chelerythrine, and Sanguinarine on Proliferation in Four Human Immortalized Cell Lines," Journal of the Iowa Academy of Science: JIAS, 119(1-4), 22-27. Available at: https://scholarworks.uni.edu/jias/vol119/iss1/6 This Research is brought to you for free and open access by the Iowa Academy of Science at UNI ScholarWorks. It has been accepted for inclusion in Journal of the Iowa Academy of Science: JIAS by an authorized editor of UNI ScholarWorks. For more information, please contact [email protected]. Jour. Iowa Acad. Sci. 119(1--4):22-27, 2012 Effects of Berberine, Chelerythrine, and Sanguinarine on Proliferation in Four Human Immortalized Cell Lines DAVIDS. SENCHINA1·*, NISARG B. SHAH2 and MARC G. BUSCH 1 1Deparcmenc of Biology, Drake University, Des Moines, IA 2Pharmacy Program, Drake University, Des Moines, IA Bloodroot (Sanguinaria canadensis L., Papaveraceae) is a plane rich in benzophenanchridine (isoquinoline) alkaloids ~uch_ as sanguinarine and chelerychrine. -
Kinetworks™ Applications Examples
EXAMPLES OF APPLICATIONS 1 This presentation demonstrated the power of the Kinetworks™ approach to uncover significant research results in a cost effective and efficient manner. 1 Drug Target Discovery A major bottleneck in drug discovery is the identification and validation of drug targets Human genome project has identified over 5,000 cell signalling proteins as potential drug targets Less than 500 proteins have been investigated as drug targets by pharmaceutical industry in its entire history $5 billion spent annually screening non-ideal targets Kinexus is dedicated to identifying and validating drug targets and leads for our clients through offer of our unique Kinetworks™ proteomics services 2 Drug discovery is a very risky and expensive proposition. Only one in a hundred thousand compounds may become a successful drug, after the investment of over US $600 million on average and frequently more than 10 years in development. To discover a drug, the right target must be identified first. This target can be used as the bait to fish for small molecule compounds that are typically inhibitors of the chosen target by high throughput screening. Lead compounds are put sequentially through cell-based, then animal- based and finally human trials. Each subsequent step of the drug discovery and validation process is associated with dramatic increases in cost. Only about 1 in 10 lead compounds that look promising at the end of the animal trials make it successfully through Phase III human trials and receive FDA approval. It is this high rate of failure at the late stages of clinical trials that has made drug discovery so expensive. -
Supplementary Information Method CLEAR-CLIP. Mouse Keratinocytes
Supplementary Information Method CLEAR-CLIP. Mouse keratinocytes of the designated genotype were maintained in E-low calcium medium. Inducible cells were treated with 3 ug/ml final concentration doxycycline for 24 hours before performing CLEAR-CLIP. One 15cm dish of confluent cells was used per sample. Cells were washed once with cold PBS. 10mls of cold PBS was then added and cells were irradiated with 300mJ/cm2 UVC (254nM wavelength). Cells were then scraped from the plates in cold PBS and pelleted by centrifugation at 1,000g for 2 minutes. Pellets were frozen at -80oC until needed. Cells were then lysed on ice with occasional vortexing in 1ml of lysis buffer (50mM Tris-HCl pH 7.4, 100mM NaCl, 1mM MgCl2, 0.1 mM CaCl2, 1% NP-40, 0.5% Sodium Deoxycholate, 0.1% SDS) containing 1X protease inhibitors (Roche #88665) and RNaseOUT (Invitrogen #10777019) at 4ul/ml final concentration. Next, TurboDNase (Invitrogen #AM2238, 10U), RNase A (0.13ug) and RNase T1 (0.13U) were added and samples were incubated at 37oC for 5 minutes with occasional mixing. Samples were immediately placed on ice and then centrifuged at 16,160g at 4oC for 20 minutes to clear lysate. 25ul of Protein-G Dynabeads (Invitrogen #10004D) were used per IP. Dynabeads were pre-washed with lysis buffer and pre- incubated with 3ul of Wako Anti-Mouse-Ago2 (2D4) antibody. The dynabead/antibody mixture was added to the lysate and rocked for 2 hours at 4oC. All steps after the IP were done on bead until samples were loaded into the polyacrylamide gel. -
The PRKCI and SOX2 Oncogenes Are Coamplified and Cooperate to Activate Hedgehog Signaling in Lung Squamous Cell Carcinoma
Cancer Cell Article The PRKCI and SOX2 Oncogenes Are Coamplified and Cooperate to Activate Hedgehog Signaling in Lung Squamous Cell Carcinoma Verline Justilien,1 Michael P. Walsh,1 Syed A. Ali,1 E. Aubrey Thompson,1 Nicole R. Murray,1 and Alan P. Fields1,* 1Department of Cancer Biology, Mayo Clinic Cancer Center, Jacksonville, FL 32224, USA *Correspondence: fi[email protected] http://dx.doi.org/10.1016/j.ccr.2014.01.008 SUMMARY We report that two oncogenes coamplified on chromosome 3q26, PRKCI and SOX2, cooperate to drive a stem-like phenotype in lung squamous cell carcinoma (LSCC). Protein kinase Ci (PKCi) phosphorylates SOX2, a master transcriptional regulator of stemness, and recruits it to the promoter of Hedgehog (Hh) acyltransferase (HHAT) that catalyzes the rate-limiting step in Hh ligand production. PKCi-mediated SOX2 phosphorylation is required for HHAT promoter occupancy, HHAT expression, and maintenance of a stem-like phenotype. Primary LSCC tumors coordinately overexpress PKCi, SOX2, and HHAT and require PKCi-SOX2-HHAT signaling to maintain a stem-like phenotype. Thus, PKCi and SOX2 are genetically, biochemically, and functionally linked in LSCC, and together they drive tumorigenesis by establishing a cell-autonomous Hh signaling axis. INTRODUCTION Similar cell populations exist in several cancer types (Chen et al., 2012; Driessens et al., 2012; Schepers et al., 2012). Line- Lung cancer is the major cause of cancer death, with a 5-year- age tracing reveals these cells clonally expand to give rise to survival rate of 16% (Siegel et al., 2012). Non-small cell lung malignant and nonmalignant, differentiated cell types. -
CDK4/6 Inhibition Reprograms Mitochondrial Metabolism in BRAFV600 Melanoma Via a P53 Dependent Pathway
cancers Article CDK4/6 Inhibition Reprograms Mitochondrial Metabolism in BRAFV600 Melanoma via a p53 Dependent Pathway Nancy T. Santiappillai 1,2, Shatha Abuhammad 1 , Alison Slater 1, Laura Kirby 1, Grant A. McArthur 1,3,†, Karen E. Sheppard 1,2,3,*,† and Lorey K. Smith 1,3,*,† 1 Cancer Research Division, Peter MacCallum Cancer Centre, Melbourne 3052, Australia; [email protected] (N.T.S.); [email protected] (S.A.); [email protected] (A.S.); [email protected] (L.K.); [email protected] (G.A.M.) 2 Department of Biochemistry and Molecular Biology, University of Melbourne, Melbourne 3052, Australia 3 Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne 3052, Australia * Correspondence: [email protected] (K.E.S.); [email protected] (L.K.S.) † These authors contributed equally to the work. Simple Summary: Cyclin-dependent kinases 4 and 6 (CDK4/6) are key enzymes controlling the cell cycle. CDK4/6 inhibitors are being tested in multiple clinical trials for a range of cancers including melanoma, and a deeper understanding of how they interact with other therapies is vital for their clinical development. Beyond the cell cycle, CDK4/6 regulates cell metabolism, which is a critical factor determining response to standard-of-care mitogen-activated protein kinase (MAPK) pathway therapies in melanoma. Here, we show that CDK4/6 inhibitors increase glutamine and fatty acid-oxidation-dependent mitochondrial metabolism in melanoma cells, but they do not alter the metabolic response to MAPK inhibitors. These observations shed light on how CDK4/6 inhibitors Citation: Santiappillai, N.T.; impinge on the regulation of metabolism and how they interact with other therapies in the setting of Abuhammad, S.; Slater, A.; Kirby, L.; melanoma. -
Consecutive Pharmacological Activation of PKA and PKC Mimics the Potent Cardioprotection of Temperature Preconditioning
Cardiovascular Research (2010) 88, 324–333 doi:10.1093/cvr/cvq190 Consecutive pharmacological activation of PKA and PKC mimics the potent cardioprotection of temperature preconditioning Igor Khaliulin*, Joanna E. Parker, and Andrew P. Halestrap Department of Biochemistry and the Bristol Heart Institute, University of Bristol, University Walk, Bristol BS8 1TD, UK Received 18 February 2010; revised 14 May 2010; accepted 8 June 2010; online publish-ahead-of-print 16 June 2010 Time for primary review: 25 days Aims Temperature preconditioning (TP) provides very powerful protection against ischaemia/reperfusion. Understanding the signalling pathways involved may enable the development of effective pharmacological cardioprotection. We investigated the interrelationship between activation of protein kinase A (PKA) and protein kinase C (PKC) in the signalling mechanisms of TP and developed a potent pharmacological intervention based on this mechanism. ..................................................................................................................................................................................... Methods Isolated rat hearts were subjected to TP, 30 min global ischaemia, and 60 min reperfusion. Other control and TP and results hearts were perfused with either sotalol (b-adrenergic blocker) or H-89 (PKA inhibitor). Some hearts were pre- treated with either isoproterenol (b-adrenergic agonist) or adenosine (PKC activator) that were given alone, simul- taneously, or sequentially. Pre-treatment with isoproterenol,