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Phylogenetic Relationships of Freshwater Fishes of the Genus Capoeta (Actinopterygii, Cyprinidae) in Iran
Received: 3 May 2016 | Revised: 8 August 2016 | Accepted: 9 August 2016 DOI: 10.1002/ece3.2411 ORIGINAL RESEARCH Phylogenetic relationships of freshwater fishes of the genus Capoeta (Actinopterygii, Cyprinidae) in Iran Hamid Reza Ghanavi | Elena G. Gonzalez | Ignacio Doadrio Museo Nacional de Ciencias Naturales, Biodiversity and Evolutionary Abstract Biology Department, CSIC, Madrid, Spain The Middle East contains a great diversity of Capoeta species, but their taxonomy re- Correspondence mains poorly described. We used mitochondrial history to examine diversity of the Hamid Reza Ghanavi, Department of algae- scraping cyprinid Capoeta in Iran, applying the species- delimiting approaches Biology, Lund University, Lund, Sweden. Email: [email protected] General Mixed Yule- Coalescent (GMYC) and Poisson Tree Process (PTP) as well as haplotype network analyses. Using the BEAST program, we also examined temporal divergence patterns of Capoeta. The monophyly of the genus and the existence of three previously described main clades (Mesopotamian, Anatolian- Iranian, and Aralo- Caspian) were confirmed. However, the phylogeny proposed novel taxonomic findings within Capoeta. Results of GMYC, bPTP, and phylogenetic analyses were similar and suggested that species diversity in Iran is currently underestimated. At least four can- didate species, Capoeta sp4, Capoeta sp5, Capoeta sp6, and Capoeta sp7, are awaiting description. Capoeta capoeta comprises a species complex with distinct genetic line- ages. The divergence times of the three main Capoeta clades are estimated to have occurred around 15.6–12.4 Mya, consistent with a Mio- Pleistocene origin of the di- versity of Capoeta in Iran. The changes in Caspian Sea levels associated with climate fluctuations and geomorphological events such as the uplift of the Zagros and Alborz Mountains may account for the complex speciation patterns in Capoeta in Iran. -
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Prevalence, Intensity and Pathological Lesions Associated with Helminth
PREVALENCE, INTENSITY AND PATHOLOGICAL LESIONS ASSOCIATED WITH HELMINTH INFECTIONS IN FARMED / / AND WILD FISH IN UPPER TANA RIVER BASIN, KENYA CHARLES GICHOHlt MATHENGE (BVM, UON) A THESIS SUBMITTED TO THE UNIVERSITY OF NAIROBI IN PARTIAL FULFILLMENT FOR THE DEGREE OF MASTER OF SCIENCE IN FISH SCIENCE University of NAIROBI Library 0416939 7 DEPARTMENT OF VETERINARY PATHOLOGY, MICROBIOLOGY AND PARASITOLOGY FACULTY OF VETERINARY MEDICINE UNIVERSITY OF NAIROBI 2010 11 DECLARATION This thesis is my original work and has not been presented for a degree in any other University. Signed ............ date: \ Charles Gichohi Mathenge This thesis has been submitted for examination with our approval as University Supervisors: Signed:........................................................ date: A P i 0 Dr. Mbuthia, P. G. (BVM, MSc, Dip. Path., PhD) date:...... Dr. Waruiru, R. M. (BVM, MSc, PhD) Signed: ...'. 7 ......... date:. /. 9 .... Prof. Ngatia, T. A. (BVM, MSc, Dip. PVM, PhD) Ill DEDICATION This work is dedicated to my mother Rachael Waruguru and my late father, Moses Wanjuki Mathenge. IV ACKNOWLEDGEMENTS I would like to express my sincere and deep gratitude to my supervisors Dr. Mbuthia P.G., Dr. Waruiru R.M. and Professor Ngatia T.A., for their invaluable advice, suggestions, guidance, moral support and encouragement throughout the study period. I am highly indebted to the Director, Department of Veterinary Services, Ministry of Livestock and Fisheries Development, for allowing me to go on study leave and the award of a scholarship to undertake this MSc programme. I also wish to acknowledge the Chairman, Department of Veterinary Pathology, Microbiology and Parasitology, Prof. Maingi E. N. for invaluable advice and facilitating the preliminary market study. -
Taxonomic Status of the Genus Cobitis Linnaeus, 1758 (Teleostei: Cobitidae) in the Southern Caspian Sea Basin, Iran with Description of a New Species
FishTaxa (2017) 2(1): 48-61 E-ISSN: 2458-942X Journal homepage: www.fishtaxa.com © 2016 FISHTAXA. All rights reserved Taxonomic status of the genus Cobitis Linnaeus, 1758 (Teleostei: Cobitidae) in the southern Caspian Sea basin, Iran with description of a new species Soheil EAGDERI1*, Arash JOULADEH-ROUDBAR1, Pariya JALILI1, Golnaz SAYYADZADEH2, Hamid Reza ESMAEILI2 1Department of Fisheries, Faculty of Natural Resources, University of Tehran, Karaj, Iran. 2Ichthyology and Molecular Systematics Research Laboratory, Department of Biology, College of Sciences, Shiraz University, Shiraz, Iran. Corresponding author: *E-mail: [email protected] Abstract Members of the genus Cobitis in the southern Caspian Sea basin of Iran are found from the Atrak to Aras Rivers. Two species, namely C. keyvani and C. faridpaki had been already described from this distribution range. However, previous study revealed that C. keyvani is a junior synonym of C. faridpaki, therefore populations of the eastern part of the Sefid River are C. faridpaki and those of the western part of this basin represent an undescribed species misidentified as C. keyvani in previous studies. Here we describe and compare it with other species of this genus from Iran based on morphological and molecular (COI barcode region) characters. Keywords: Freshwater fish, Morphology, COI, Spined loach, Sefid River. Zoobank: urn:lsid:zoobank.org:pub:8E2059BD-3345-4FB1-A7D1-12FD62CE01AD urn:lsid:zoobank.org:act:B5BA46A4-6ABE-4392-A558-DA54A08D270A Introduction Members of the genus Cobitis represent one of the most widely distributed Palearctic primary freshwater fishes (Sawada 1982; Coad 2017). They are found in Eurasia and Morocco (North Africa) and Southern Asia (Eschmeyer and Fong 2011). -
Capoeta Damascina (Valenciennes, 1842), a New Host of Contracaecum Sp
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Asian Pac J Trop Biomed 2014; 4(Suppl 1): S139-S142 S139 Asian Pacific Journal of Tropical Biomedicine journal homepage: www.apjtb.com Document heading doi:10.12980/APJTB.4.2014C1223 2014 by the Asian Pacific Journal of Tropical Biomedicine. All rights reserved. 襃 Capoeta damascina (Valenciennes, 1842), a new host of Contracaecum sp. and Capillaria sp. (Nematoda) from the Kor River Basin, southwestern Iran 1 2 3 4 3 Zeinab Gholami , Mohammad Taghi Rahimi , Eshrat Beigom Kia , Hamid Reza Esmaeili , Iraj Mobedi * 1Department of Earth and Environmental Sciences, Palaeontology & Geobiology & GeoBio-Center LMU, Ludwig-Maximilians-University, Richard- Wagner-Strasse10, Munich, Germany 2Department of Parasitology and Mycology, School of Medicine, Mazandaran University of Medical Science, Sari, Iran 3Department of Medical Parasitology and Mycology, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran 4Department of Biology, College of Science, Shiraz University, Shiraz, Iran PEER REVIEW ABSTRACT Peer reviewer Objective: Capoeta damascina To investigate the parasitic infection status of cyprinid fish, in Mahdi Darvishi, Department of GMethods:omban spring-stream, Kor River Basin, Fars Province, southwestern Iran. pathology, veterinary faculty, Semnan, A total of 12 cyprinid fish (7 females and 5 males) were collected from Gomban spring- Iran. stream, Kor River Basin, Fars Province, southwestern Iran. The collected fish were dissected Tel: +9809192761319 carefully and their internal organs such as liver, gonad, muscle, abdominal lobes, whole viscera Fax: +982732571 andResults: digestive tract were surveyed parasitologically. 12 E-mail: [email protected] One female cyprinid fish Contracaecumout of fish was infected with three nematodes. -
An Evaluation of Morphometric and Genetic Differentiation
Fourteen years after the Shahid-Rajaei dam construction: an evaluation of morphometric and genetic differentiation between isolated up- and downstream populations of Capoeta capoeta gracilis (Pisces: Cyprinidae) in the Tajan River of Iran Hossein AnvariFar1, H. Farahmand2, D.M. Silva3, R.P. Bastos3, A. Khyabani1 and Hassan AnvariFar4 1Department of Fisheries, University of Applied Science and Technology, Golestan, Iran 2Department of Fisheries, Faculty of Natural Resources, University of Tehran, Karaj, Iran 3Instituto de Ciências Biológicas, Universidade Federal de Goiás, Goiânia, GO, Brasil 4Department of Veterinary Science, Faculty of Veterinary Medicine, Islamic Azad University of Babol, Mazandaran, Iran Corresponding author: D.M. Silva E-mail: [email protected] Genet. Mol. Res. 12 (3): 3465-3478 (2013) Received January 15, 2013 Accepted May 28, 2013 Published September 10, 2013 DOI http://dx.doi.org/10.4238/2013.September.10.3 ABSTRACT. We evaluated the effects of the Shahid-Rajaei dam, 14 years after its construction, on morphometric and genetic divergence between up- and downstream populations of the Iranian fish Siah- Mahi (Capoeta capoeta gracilis). Sixty-six specimens were analyzed. There were significant differences between the 2 groups in the means Genetics and Molecular Research 12 (3): 3465-3478 (2013) ©FUNPEC-RP www.funpecrp.com.br H. AnvariFar et al. 3466 of 16 morphometric characters (univariate analysis). In discriminant function analysis, the proportion of individuals classified into their original groups was 97 and 100% for up- and downstream populations, respectively. Principal component analysis of morphometric data demonstrated that the up- and downstream samples of Siah-Mahi are clearly distinct. In the genetic analysis, 6 informative primers produced 89 polymorphic bands with 95% polymorphism. -
1-Research Article Geometric Morphometric Comparison of Trout
Iran. J. Ichthyol. (September 2017), 4(3): 220-230 Received: May 03, 2017 © 2017 Iranian Society of Ichthyology Accepted: June 27, 2017 P-ISSN: 2383-1561; E-ISSN: 2383-0964 doi: 10.7508/iji.2017 http://www.ijichthyol.org 1-Research Article Geometric morphometric comparison of trout barb, Capoeta trutta (Teleostei: Cyprinidae) in the Tigris River basin Yazdan KEIVANY* & Mohsen ARAB Department of Natural Resource (Fisheries Division), Isfahan University of Technology, Isfahan 84156-83111, Iran *Email: [email protected] Abstract: A total of 136 specimens of trout barb, Capoeta trutta (Heckel, 1843) from eight rivers of the Tigris Basin were caught by seine net to compare their shape using geometric morphometrics. After anesthesia, using 1% clove oil solution, the specimens were fixed in 10% buffered formalin and transferred to the Ichthyology Museum of Isfahan University of Technology for further studies. The left sides of the specimens were photographed using a copy-stand equipped with a digital camera. To extract body shape data, 13 homologous landmark-points were digitized using tpsDig2 software. After GPA superimposing, the landmark data, were analyzed using Principal Components Analysis (PCA), Canonical Variate Analysis (CVA) and Cluster Analysis (CA) to explore the patterns of variation in their body shape. All multivariate analyses were computed using PAST software. The consensus configuration of populations was visualized using the wireframe graphs in MorphoJ to compare their shape difference. The PCA, CVA and CA showed differences among the populations, especially, between Konjancham and other populations. This result showed that geometric morphometric methods could separate trout barb populations of the Tigris River Basin from each other to a great extent. -
Guide to Monogenoidea of Freshwater Fish of Palaeartic and Amur Regions
GUIDE TO MONOGENOIDEA OF FRESHWATER FISH OF PALAEARTIC AND AMUR REGIONS O.N. PUGACHEV, P.I. GERASEV, A.V. GUSSEV, R. ERGENS, I. KHOTENOWSKY Scientific Editors P. GALLI O.N. PUGACHEV D. C. KRITSKY LEDIZIONI-LEDIPUBLISHING © Copyright 2009 Edizioni Ledizioni LediPublishing Via Alamanni 11 Milano http://www.ledipublishing.com e-mail: [email protected] First printed: January 2010 Cover by Ledizioni-Ledipublishing ISBN 978-88-95994-06-2 All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, transmitted or utilized in any form or by any means, electonical, mechanical, photocopying or oth- erwise, without permission in writing from the publisher. Front cover: /Dactylogyrus extensus,/ three dimensional image by G. Strona and P. Galli. 3 Introduction; 6 Class Monogenoidea A.V. Gussev; 8 Subclass Polyonchoinea; 15 Order Dactylogyridea A.V. Gussev, P.I. Gerasev, O.N. Pugachev; 15 Suborder Dactylogyrinea: 13 Family Dactylogyridae; 17 Subfamily Dactylogyrinae; 13 Genus Dactylogyrus; 20 Genus Pellucidhaptor; 265 Genus Dogielius; 269 Genus Bivaginogyrus; 274 Genus Markewitschiana; 275 Genus Acolpenteron; 277 Genus Pseudacolpenteron; 280 Family Ancyrocephalidae; 280 Subfamily Ancyrocephalinae; 282 Genus Ancyrocephalus; 282 Subfamily Ancylodiscoidinae; 306 Genus Ancylodiscoides; 307 Genus Thaparocleidus; 308 Genus Pseudancylodiscoides; 331 Genus Bychowskyella; 332 Order Capsalidea A.V. Gussev; 338 Family Capsalidae; 338 Genus Nitzschia; 338 Order Tetraonchidea O.N. Pugachev; 340 Family Tetraonchidae; 341 Genus Tetraonchus; 341 Genus Salmonchus; 345 Family Bothitrematidae; 359 Genus Bothitrema; 359 Order Gyrodactylidea R. Ergens, O.N. Pugachev, P.I. Gerasev; 359 Family Gyrodactylidae; 361 Subfamily Gyrodactylinae; 361 Genus Gyrodactylus; 362 Genus Paragyrodactylus; 456 Genus Gyrodactyloides; 456 Genus Laminiscus; 457 Subclass Oligonchoinea A.V. -
Yaġayan Capoeta Banarescui'nun
T.C. ORDU ÜNĠVERSĠTESĠ FEN BĠLĠMLERĠ ENSTĠTÜSÜ AġAĞI MELET IRMAĞI’NDA (ORDU) YAġAYAN Capoeta banarescui’NUN YAġ, BÜYÜME VE OTOLĠT ÖZELLĠKLERĠ GÜLġAH KESKĠN Bu tez, Biyoloji Anabilim Dalında Yüksek Lisans derecesi için hazırlanmıĢtır. ORDU 2013 TEZ BĠLDĠRĠMĠ Tez yazım kurallarına uygun olarak hazırlanan bu tezin yazılmasında bilimsel ahlak kurallarına uyulduğunu, başkalarının eserlerinden yararlanılması durumunda bilimsel normlara uygun olarak atıfta bulunulduğunu, tezin içerdiği yenilik ve sonuçların başka bir yerden alınmadığını, kullanılan verilerde herhangi bir tahrifat yapılmadığını, tezin herhangi bir kısmının bu üniversite veya başka bir üniversitedeki başka bir tez çalışması olarak sunulmadığını beyan ederim. Gülşah KESKİN Not: Bu tezde kullanılan özgün ve başka kaynaktan yapılan bildirişlerin, çizelge, şekil ve fotoğrafların kaynak gösterilmeden kullanımı, 5846 sayılı Fikir ve Sanat Eserleri Kanunundaki hükümlere tabidir. I ÖZET AġAĞI MELET IRMAĞI’NDA (ORDU) YAġAYAN Capoeta banarescui’NUN YAġ, BÜYÜME VE OTOLĠT ÖZELLĠKLERĠ GülĢah KESKĠN Ordu Üniversitesi Fen Bilimleri Enstitüsü Biyoloji Anabilim Dalı, 2013 Yüksek Lisans Tezi, 131s. Danışman: Doç. Dr. Derya BOSTANCI Bu araştırmada, Melet Irmağı‟ndan Temmuz 2010 – Ekim 2012 tarihleri arasında yakalanan 247 adet Capoeta banarescui Turan, Kottelat, Ekmekçi & Imamoglu, 2006 bireyinin yaş ve eşey kompozisyonu, boy ve ağırlık dağılımları, yaş-boy, yaş- ağırlık, boy-ağırlık ilişkileri, kondisyon faktörü ve otolit biyometrisi incelenmiştir. Örneklerin % 67.6‟sı dişi, % 26.7‟si erkek, % 5.7‟sinin ise cinsiyeti belirlenememiş bireylerden oluşmaktadır. Dişi: erkek oranı 2.5:1 olarak saptanmıştır. Tüm bireylerin total boy ve ağırlıkları sırasıyla 8.1-21 cm ve 5.07-108.93 g arasında dağılım göstermektedir. Yaş tayininde kullanılabilecek en güvenilir kemiksi yapının belirlenmesi amacıyla pul, omur, asteriskus ve lapillus otolitleri alınmıştır. -
Original Article the Impact of Manjil and Tarik Dams (Sefidroud River
Int. J. Aquat. Biol. (2013) 1(4): 195-201 E-ISSN: 2322-5270; P-ISSN: 2383-0956 Journal homepage: www.ij-aquaticbiology.com © 2013 Iranian Society of Ichthyology Original Article The impact of Manjil and Tarik dams (Sefidroud River, southern Caspian Sea basin) on morphological traits of Siah Mahi Capoeta gracilis (Pisces: Cyprinidae) Adeleh Heidari1, Hamed Mousavi-Sabet*1, Majidreza Khoshkholgh1, Hamid Reza Esmaeili2, Soheil Eagderi3 1Department of Fisheries, Faculty of Natural Resources, University of Guilan, Sowmeh Sara, P.O. Box: 1144, Guilan, Iran. 2Department of Biology, College of Sciences, Shiraz University, Iran. 3Department of Fisheries, Faculty of Natural Resources, University of Tehran, Karaj, Iran. Article history: Abstract: It has been postulated that the building of the Manjil and Tarik dams on Sefidroud River has Received 2 June 2013 led to the body shape variation of Capoeta gracilis in up- and downstream populations due to the Accepted 4 August 2013 isolation. In this study, Geometric morphometric approach was used to explore body shape variations Available online 21 August 2013 of Capoeta gracilis populations in up- and downstream Manjil and Tarik dams in Sefidroud River from south of the Caspian Sea basin. The shape of 90 individuals from three sampling sites were extracted Keywords: Capoeta gracilis by recording the 2-D coordinates of 13 landmark points. PCA, CVA, DFA and CA analysis were used Dam to examine shape differences among the populations. The significant differences were found among Geometric morphometrics the shape of the populations and these differences were observed in the snout, the caudal peduncle and Shape variation the head. -
The Freshwater Fishes of Iran Redacted for Privacy Hs Tract Approved: Dr
AN ABSTRPCT OF THE THESIS OF Neil Brant Anuantzout for the degree of Dcctor of Philosophy in Fisheries presented on 2 Title: The Freshwater Fishes of Iran Redacted for Privacy hs tract approved: Dr. Carl E. Bond The freshwater fish fauna of Iran is representedby 3 classes, 1 orders, 31 familIes, 90 genera, 269species and 58 subspecIes. This includes 8 orders, 10 families, 14 generaand 33 species with marine representatives that live at least partof the tixne in freshwater. Also included are one family, 7 genera,9 species and 4 subspecies introduced into Iran. Overhalf the species and nearly half the genera are in the family Cypririidae; over75% of the genera and species are in the orderCypriniformes. The fish fauna may be separated into threemajor groups. The largest and nst diverse is the Sannatian Fauna,which includes the Caspian Sea, Azerbaijan, Lake Bezaiyeh, Rhorasan,Isfahan, Dashte-Kavir, and the four subbasins of the Namak LakeBasins. Of the fish found in Iran, 14 of 31 earnilies, 48 of 90 genera,127 of 269 species and 46 of 58 subspecies are found in theSarmatian Fauna. Endemisa is low, and nstly expressed at the subspecific level.The fauna contains marine relicts from the Sannatian Sea and recentinmigrants with strong relationships to the fishes of Europe, the Black Seaand northern Asia. The marine relicts are absent outside the Caspian Sea Basin, where the fauna is best described as a depauperate extensionof the Caspian and Aral Sea faunas. The second major fauna is the Nesopotamian Fauna,and includes the Tigris and Euphrates river Basins, the Karun1iver Basin, and the Kol, nd, Maliarlu, Neyriz and Lar Basins. -
T. C. Uludağ Üniversitesi Fen Bilimleri Enstitüsü Türkiye Endemiği Siraz Baliği Capoeta Baliki (Turan, Kotte
T. C. ULUDAĞ ÜNİVERSİTESİ FEN BİLİMLERİ ENSTİTÜSÜ TÜRKİYE ENDEMİĞİ SİRAZ BALIĞI CAPOETA BALİKİ (TURAN, KOTTELAT, EKMEKÇİ & İMAMOĞLU, 2006) (CYPRINIFORMES: CYPRINIDAE) 'NİN HELMİNT FAUNASI MCEBO EMMANUEL MNISI TÜRKİYE ENDEMİĞİ SİRAZ BALIĞI CAPOETA BALİKİ (TURAN, KOTTELAT, EKMEKÇİ & İMAMOĞLU, 2006) (CYPRINIFORMES: CYPRINIDAE) 'NİN HELMİNT FAUNASI MCEBO EMMANUEL MNISI T. C. ULUDAĞ ÜNİVERSİTESİ FEN BİLİMLERİ ENSTİTÜSÜ TÜRKİYE ENDEMİĞİ SİRAZ BALIĞI CAPOETA BALIKİ (TURAN, KOTTELAT, EKMEKÇİ & İMAMOĞLU, 2006) (CYPRINIFORMES: CYPRINIDAE) 'NİN HELMİNT FAUNASI MCEBO EMMANUEL MNİSİ Prof. Dr. Hikmet S. YILDIRIMHAN (Danışman) YÜKSEK LİSANS TEZİ BİYOLOJİ ANABİLİM DALI BURSA- 2017 Her hakkı saklıdır ÖZET Yüksek Lisans Tezi TÜRKİYE ENDEMİĞİ SİRAZ BALIĞI, CAPOETA BALIKİ (TURAN, KOTTELAT, EKMEKÇİ & İMAMOĞLU, 2006) (CYPRINIFORMES: CYPRINIDAE) 'NİN HELMİNT FAUNASI MCEBO EMMANUEL MNİSİ Uludağ Üniversitesi Fen Bilimleri Enstitüsü Biyoloji Anabilim Dalı Danışman: Prof. Dr. Hikmet Sami YILDIRIMHAN Şubat, Mart ve Nisan 2017 Ayları sırasında, 65 Siraz Balığı Capoeta baliki, Eskişehir'de Seydi Nehri'nden helmint parazitleri incelenmek üzere toplantı. Bu balıklardan 24’ünde helmint parazit raslanmıştır ve toplam 65 parazit gözlenmiştir. Kaydedilen bu parazitler 1 Digeanea; Allocreadium isoporomu ve 3 nematod türü; Contracaecum sp, Eustrongylides excisus ve Rabdochona denutata'dan oluşmaktadır. Allocreadium isoporom 12 balıkta (% 18.46) bulunmuştur. Balıkların% 12.31'ini oluşturan sekiz balık, Contracaecum sp., Eustrongylides excisus ve Rabdochona denutata ile enfekte