Studies on Hereditary Spastic Paraplegia Proteins Studies on Hereditary Spastic Paraplegia Proteinsstudies on Hereditary
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Supplementary Materials
1 Supplementary Materials: Supplemental Figure 1. Gene expression profiles of kidneys in the Fcgr2b-/- and Fcgr2b-/-. Stinggt/gt mice. (A) A heat map of microarray data show the genes that significantly changed up to 2 fold compared between Fcgr2b-/- and Fcgr2b-/-. Stinggt/gt mice (N=4 mice per group; p<0.05). Data show in log2 (sample/wild-type). 2 Supplemental Figure 2. Sting signaling is essential for immuno-phenotypes of the Fcgr2b-/-lupus mice. (A-C) Flow cytometry analysis of splenocytes isolated from wild-type, Fcgr2b-/- and Fcgr2b-/-. Stinggt/gt mice at the age of 6-7 months (N= 13-14 per group). Data shown in the percentage of (A) CD4+ ICOS+ cells, (B) B220+ I-Ab+ cells and (C) CD138+ cells. Data show as mean ± SEM (*p < 0.05, **p<0.01 and ***p<0.001). 3 Supplemental Figure 3. Phenotypes of Sting activated dendritic cells. (A) Representative of western blot analysis from immunoprecipitation with Sting of Fcgr2b-/- mice (N= 4). The band was shown in STING protein of activated BMDC with DMXAA at 0, 3 and 6 hr. and phosphorylation of STING at Ser357. (B) Mass spectra of phosphorylation of STING at Ser357 of activated BMDC from Fcgr2b-/- mice after stimulated with DMXAA for 3 hour and followed by immunoprecipitation with STING. (C) Sting-activated BMDC were co-cultured with LYN inhibitor PP2 and analyzed by flow cytometry, which showed the mean fluorescence intensity (MFI) of IAb expressing DC (N = 3 mice per group). 4 Supplemental Table 1. Lists of up and down of regulated proteins Accession No. -
Comparative Proteomics Analysis of Human Liver Microsomes and S9
DMD Fast Forward. Published on November 7, 2019 as DOI: 10.1124/dmd.119.089235 This article has not been copyedited and formatted. The final version may differ from this version. DMD # 89235 Comparative Proteomics Analysis of Human Liver Microsomes and S9 Fractions Xinwen Wang, Bing He, Jian Shi, Qian Li, and Hao-Jie Zhu Department of Clinical Pharmacy, University of Michigan, Ann Arbor, Michigan (X.W., B.H., J.S., H.-J.Z.); and School of Life Science and Technology, China Pharmaceutical University, Nanjing, Jiangsu, 210009 (Q.L.) Downloaded from dmd.aspetjournals.org at ASPET Journals on October 2, 2021 1 DMD Fast Forward. Published on November 7, 2019 as DOI: 10.1124/dmd.119.089235 This article has not been copyedited and formatted. The final version may differ from this version. DMD # 89235 Running title: Comparative Proteomics of Human Liver Microsomes and S9 Corresponding author: Hao-Jie Zhu Ph.D. Department of Clinical Pharmacy University of Michigan College of Pharmacy 428 Church Street, Room 4565 Downloaded from Ann Arbor, MI 48109-1065 Tel: 734-763-8449, E-mail: [email protected] dmd.aspetjournals.org Number of words in Abstract: 250 at ASPET Journals on October 2, 2021 Number of words in Introduction: 776 Number of words in Discussion: 2304 2 DMD Fast Forward. Published on November 7, 2019 as DOI: 10.1124/dmd.119.089235 This article has not been copyedited and formatted. The final version may differ from this version. DMD # 89235 Non-standard ABBreviations: DMEs, drug metabolism enzymes; HLM, human liver microsomes; HLS9, -
NIH Public Access Author Manuscript Expert Opin Drug Metab Toxicol
NIH Public Access Author Manuscript Expert Opin Drug Metab Toxicol. Author manuscript; available in PMC 2009 March 19. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Expert Opin Drug Metab Toxicol. 2008 June ; 4(6): 697±720. doi:10.1517/17425250802102627. Non-P450 aldehyde oxidizing enzymes: the aldehyde dehydrogenase superfamily Satori A Marchitti, Chad Brocker*, Dimitrios Stagos*, and Vasilis Vasiliou† University of Colorado Health Sciences Center, Molecular Toxicology & Environmental Health Sciences Program, Department of Pharmaceutical Sciences, Denver, Colorado 80262, USA Abstract Background—Aldehydes are highly reactive molecules. While several non-P450 enzyme systems participate in their metabolism, one of the most important is the aldehyde dehydrogenase (ALDH) superfamily, composed of NAD(P)+-dependent enzymes that catalyze aldehyde oxidation. Objective—This article presents a review of what is currently known about each member of the human ALDH superfamily including the pathophysiological significance of these enzymes. Methods—Relevant literature involving all members of the human ALDH family was extensively reviewed, with the primary focus on recent and novel findings. Conclusion—To date, 19 ALDH genes have been identified in the human genome and mutations in these genes and subsequent inborn errors in aldehyde metabolism are the molecular basis of several diseases, including Sjögren-Larsson syndrome, type II hyperprolinemia, γ-hydroxybutyric aciduria and pyridoxine-dependent seizures. ALDH enzymes also play important roles in embryogenesis and development, neurotransmission, oxidative stress and cancer. Finally, ALDH enzymes display multiple catalytic and non-catalytic functions including ester hydrolysis, antioxidant properties, xenobiotic bioactivation and UV light absorption. Keywords aldehyde dehydrogenase; aldehyde metabolism; ALDH 1. -
Update on the Aldehyde Dehydrogenase Gene (ALDH) Superfamily Brian Jackson,1 Chad Brocker,1 David C
GENOME UPDATE Update on the aldehyde dehydrogenase gene (ALDH) superfamily Brian Jackson,1 Chad Brocker,1 David C. Thompson,2 William Black,1 Konstandinos Vasiliou,1 Daniel W. Nebert3 and Vasilis Vasiliou1* 1Molecular Toxicology and Environmental Health Sciences Program, Department of Pharmaceutical Sciences, University of Colorado Anschutz Medical Center, Aurora, CO 80045, USA 2Department of Clinical Pharmacy, University of Colorado Anschutz Medical Center, Aurora, CO 80045, USA 3Department of Environmental Health and Center for Environmental Genetics (CEG), University of Cincinnati Medical Center, Cincinnati, OH 45267, USA *Correspondence to: Tel: þ1 303 724 3520; Fax: þ1 303 724 7266; E-mail: [email protected] Date received (in revised form): 23rd March 2011 Abstract Members of the aldehyde dehydrogenase gene (ALDH) superfamily play an important role in the enzymic detoxifi- cation of endogenous and exogenous aldehydes and in the formation of molecules that are important in cellular processes, like retinoic acid, betaine and gamma-aminobutyric acid. ALDHs exhibit additional, non-enzymic func- tions, including the capacity to bind to some hormones and other small molecules and to diminish the effects of ultraviolet irradiation in the cornea. Mutations in ALDH genes leading to defective aldehyde metabolism are the molecular basis of several diseases, including gamma-hydroxybutyric aciduria, pyridoxine-dependent seizures, Sjo¨gren–Larsson syndrome and type II hyperprolinaemia. Interestingly, several ALDH enzymes appear to be markers for normal and cancer stem cells. The superfamily is evolutionarily ancient and is represented within Archaea, Eubacteria and Eukarya taxa. Recent improvements in DNA and protein sequencing have led to the identification of many new ALDH family members. -
Aldehyde Dehydrogenase 2 Activation and Coevolution of Its Εpkc
Nene et al. Journal of Biomedical Science (2017) 24:3 DOI 10.1186/s12929-016-0312-x RESEARCH Open Access Aldehyde dehydrogenase 2 activation and coevolution of its εPKC-mediated phosphorylation sites Aishwarya Nene†, Che-Hong Chen*† , Marie-Hélène Disatnik, Leslie Cruz and Daria Mochly-Rosen Abstract Background: Mitochondrial aldehyde dehydrogenase 2 (ALDH2) is a key enzyme for the metabolism of many toxic aldehydes such as acetaldehyde, derived from alcohol drinking, and 4HNE, an oxidative stress-derived lipid peroxidation aldehyde. Post-translational enhancement of ALDH2 activity can be achieved by serine/threonine phosphorylation by epsilon protein kinase C (εPKC). Elevated ALDH2 is beneficial in reducing injury following myocardial infarction, stroke and other oxidative stress and aldehyde toxicity-related diseases. We have previously identified three εPKC phosphorylation sites, threonine 185 (T185), serine 279 (S279) and threonine 412 (T412), on ALDH2. Here we further characterized the role and contribution of each phosphorylation site to the enhancement of enzymatic activity by εPKC. Methods: Each individual phosphorylation site was mutated to a negatively charged amino acid, glutamate, to mimic a phosphorylation, or to a non-phosphorylatable amino acid, alanine. ALDH2 enzyme activities and protection against 4HNE inactivation were measured in the presence or absence of εPKC phosphorylation in vitro. Coevolution of ALDH2 and its εPKC phosphorylation sites was delineated by multiple sequence alignments among a diverse range of species and within the ALDH multigene family. Results: We identified S279 as a critical εPKC phosphorylation site in the activation of ALDH2. The critical catalytic site, cysteine 302 (C302) of ALDH2 is susceptible to adduct formation by reactive aldehyde, 4HNE, which readily renders the enzyme inactive. -
Insights Into Aldehyde Dehydrogenase Enzymes: a Structural Perspective
REVIEW published: 14 May 2021 doi: 10.3389/fmolb.2021.659550 Insights into Aldehyde Dehydrogenase Enzymes: A Structural Perspective Kim Shortall, Ahmed Djeghader, Edmond Magner and Tewfik Soulimane* Department of Chemical Sciences, Bernal Institute, University of Limerick, Limerick, Ireland Aldehyde dehydrogenases engage in many cellular functions, however their dysfunction resulting in accumulation of their substrates can be cytotoxic. ALDHs are responsible for the NAD(P)-dependent oxidation of aldehydes to carboxylic acids, participating in detoxification, biosynthesis, antioxidant and regulatory functions. Severe diseases, including alcohol intolerance, cancer, cardiovascular and neurological diseases, were linked to dysfunctional ALDH enzymes, relating back to key enzyme structure. An in-depth understanding of the ALDH structure-function relationship and mechanism of action is key to the understanding of associated diseases. Principal structural features 1) cofactor binding domain, 2) active site and 3) oligomerization mechanism proved critical in maintaining ALDH normal activity. Emerging research based on the combination of structural, functional and biophysical studies of bacterial and eukaryotic ALDHs contributed to the appreciation of diversity within the superfamily. Herewith, we Edited by: discuss these studies and provide our interpretation for a global understanding of Ashley M Buckle, ALDH structure and its purpose–including correct function and role in disease. Our Monash University, Australia analysis provides a synopsis -
Transcriptional Silencing of ALDH2 in Acute Myeloid Leukemia Confers a Dependency
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.23.352070; this version posted October 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Transcriptional silencing of ALDH2 in acute myeloid leukemia confers a dependency on Fanconi anemia proteins Zhaolin Yang1, Yiliang Wei1, Xiaoli S. Wu1,2, Shruti V. Iyer1,2, Moonjung Jung3, Emmalee R. Adelman4, Olaf Klingbeil1, Melissa Kramer1, Osama E. Demerdash1, Kenneth Chang1, Sara Goodwin1, Emily Hodges5, W. Richard McCombie1, Maria E. Figueroa4, Agata Smogorzewska3, and Christopher R. Vakoc1,6* 1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA 2Genetics Program, Stony Brook University, Stony Brook, New York 11794, USA 3Laboratory of Genome Maintenance, The Rockefeller University, New York 10065, USA 4Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, FL 33136, USA 5Department of Biochemistry and Vanderbilt Genetics Institute, Vanderbilt University School of Medicine, Nashville, TN 37232, USA 6Lead contact *Correspondence: [email protected] Running title: Fanconi anemia pathway dependency in AML Category: Myeloid Neoplasia 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.10.23.352070; this version posted October 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Key Points Dependency on the Fanconi anemia (FA) DNA interstrand crosslink repair pathway is identified in AML. -
Aldehyde Dehydrogenase, Liver Disease and Cancer Wenjun Wang1, Chunguang Wang2, Hongxin Xu1, Yanhang Gao1
Int. J. Biol. Sci. 2020, Vol. 16 921 Ivyspring International Publisher International Journal of Biological Sciences 2020; 16(6): 921-934. doi: 10.7150/ijbs.42300 Review Aldehyde Dehydrogenase, Liver Disease and Cancer Wenjun Wang1, Chunguang Wang2, Hongxin Xu1, Yanhang Gao1 1. Department of Hepatology, The First Hospital of Jilin University, Jilin University, Changchun, Jilin, 130021, China. 2. Department of Thoracic & Cardiovascular Surgery, Second Clinical College, Jilin University, Changchun, 130041, China. Corresponding author: Yanhang Gao, MD., PhD., Department of Hepatology, The First Hospital of Jilin University, Jilin University, Changchun, Jilin, 130021, China. Email: [email protected]. Tel: +86 15804303019; +86 431 81875121; +86 431 81875106; Fax number: 0431-81875106. © The author(s). This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2019.11.20; Accepted: 2020.01.03; Published: 2020.01.22 Abstract Acetaldehyde dehydrogenase 2 (ALDH2) is the key enzyme responsible for metabolism of the alcohol metabolite acetaldehyde in the liver. In addition to conversion of the acetaldehyde molecule, ALDH is also involved in other cellular functions. Recently, many studies have investigated the involvement of ALDH expression in viral hepatitis, alcoholic liver disease (ALD), non-alcoholic fatty liver disease (NAFLD), liver fibrosis, and liver cancer. Notably, ALDH2 expression has been linked with liver cancer risk, as well as pathogenesis and prognosis, and has emerged as a promising therapeutic target. Of note, approximately 8% of the world’s population, and approximately 30-40% of the population in East Asia carry an inactive ALDH2 gene. -
ALDH1A2 Is a Candidate Tumor Suppressor Gene in Ovarian Cancer
Supplementary Materials ALDH1A2 is a Candidate Tumor Suppressor Gene in Ovarian Cancer Jung-A Choi, Hyunja Kwon, Hanbyoul Cho*, Joon-Yong Chung, Stephen M. Hewitt and Jae-Hoon Kim Figure S1. Transfection efficiency after pCMV-tagB-Flag-ALDH1A2 transfection in RMG-I, SKOV3, and OVCA433 cells. Cells were grown on coverslips and transfected with pCMV-tagB-Flag- ALDH1A2 using Lipofectamine® 2000. Cells were then immunostained with primary antibodies for Flag and visualized by confocal microscopy (A). Transfection efficiency (%) was evaluated by counting cells expressing Flag. Figure S2. Effect of ALDH1A2 overexpression on cell cycle distribution and cell death in ovarian cancer. (A-B) Cells were transfected with pCMV-tagB-Flag-ALDH1A2 using Lipofectamine® 2000. After 24 h, the cells were harvested, fixed in ice-cold 70% ethanol, and stained with propidium iodide. Cell-cycle distribution (A) and cell death (B) were analyzed by fluorescence-activated cell sorting (FACS). Apoptotic cells were quantified for DNA content after propidium iodide staining; the sub- G 1 fraction (%) represents the proportion of apoptotic cells. Statistical significance was assessed using an unpaired t test. **p < 0.05, ***p < 0.005 . 1 Figure S3. Annexin V/PI staining in RMG-I, SKOV3, and OVCA433 cells overexpressing ALDH1A2. (A-B) Cells were transfected with pCMV-tagB-Flag-ALDH1A2 using Lipofectamine® 2000. After the indicated time, cells were immediately stained with Annexin V-FITC and PI, subjected to flow cytometry analyses (A). Quantitative results of cell death were determined using Annexin V/PI (B). 2 Figure S4. Methylation status of ALDH1A2 genes in public datasets, Methylation and Expression Database of Normal and Tumor Tissues (MENT; http://mgrc.kribb.re.kr:8080/MENT/). -
Update on the Genetics of Spastic Paraplegias Maxime Boutry, Sara Morais, Giovanni Stevanin
Update on the genetics of spastic paraplegias Maxime Boutry, Sara Morais, Giovanni Stevanin To cite this version: Maxime Boutry, Sara Morais, Giovanni Stevanin. Update on the genetics of spastic paraple- gias. Current Neurology and Neuroscience Reports, Current Medicine Group, 2019, 19 (4), pp.18. 10.1007/s11910-019-0930-2. hal-02272013 HAL Id: hal-02272013 https://hal.sorbonne-universite.fr/hal-02272013 Submitted on 27 Aug 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Update on the genetics of spastic paraplegias Maxime Boutry1,2*, Sara Morais1,2,3, Giovanni Stevanin1,2 1 Institut du Cerveau et de la Moelle épinière, Sorbonne Université UMR_S1127, INSERM Unit 1127, CNRS UMR7225, 75013, Paris, France 2 Ecole Pratique des Hautes Etudes (EPHE), Paris Sciences Lettres (PSL) Research University, Neurogenetics team, 75013, Paris, France 3 UnIGENe, Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal *Current affiliation: Cell Biology Program, Hospital for Sick Children, Toronto, Ontario, Canada Corresponding author: Giovanni Stevanin [email protected] ORCID 0000-0001-9368-8657 Abstract Purpose of review Hereditary spastic paraplegias are a genetically heterogeneous group of neurological disorders. -
Cells in Diabetic Mice
ARTICLE Received 12 Jan 2016 | Accepted 18 Jul 2016 | Published 30 Aug 2016 DOI: 10.1038/ncomms12631 OPEN Aldehyde dehydrogenase 1a3 defines a subset of failing pancreatic b cells in diabetic mice Ja Young Kim-Muller1,*, Jason Fan1,2,*, Young Jung R. Kim2, Seung-Ah Lee1, Emi Ishida1, William S. Blaner1 & Domenico Accili1 Insulin-producing b cells become dedifferentiated during diabetes progression. An impaired ability to select substrates for oxidative phosphorylation, or metabolic inflexibility, initiates progression from b-cell dysfunction to b-cell dedifferentiation. The identification of pathways involved in dedifferentiation may provide clues to its reversal. Here we isolate and functionally characterize failing b cells from various experimental models of diabetes and report a striking enrichment in the expression of aldehyde dehydrogenase 1 isoform A3 (ALDH þ )asb cells become dedifferentiated. Flow-sorted ALDH þ islet cells demonstrate impaired glucose- induced insulin secretion, are depleted of Foxo1 and MafA, and include a Neurogenin3- positive subset. RNA sequencing analysis demonstrates that ALDH þ cells are characterized by: (i) impaired oxidative phosphorylation and mitochondrial complex I, IV and V; (ii) activated RICTOR; and (iii) progenitor cell markers. We propose that impaired mitochondrial function marks the progression from metabolic inflexibility to dedifferentiation in the natural history of b-cell failure. 1 Naomi Berrie Diabetes Center and Department of Medicine, Columbia University, New York, New York 10032, USA. 2 Department of Genetics and Integrated Program in Cellular, Molecular and Biomedical Studies, Columbia University, New York, New York 10032, USA. * These authors contributed equally to this work. Correspondence and requests for materials should be addressed to D.A. -
Kinetic and Structural Characterization of Isoenzyme-Selective Aldehyde
KINETIC AND STRUCTURAL CHARACTERIZATION OF ISOENZYME-SELECTIVE ALDEHYDE DEHYDROGENASE 1A INHIBITORS Mikhail Chtcherbinine Submitted to the faculty of the University Graduate School in partial fulfillment of the requirements for the degree Master of Science in the Department of Biochemistry and Molecular Biology, Indiana University August 2016 Accepted by the Graduate Faculty, Indiana University, in partial fulfillment of the requirements for the degree of Master of Science ____________________________________ Thomas D. Hurley, Ph.D., Chair Master’s Thesis Committee ____________________________________ Millie M. Georgiadis, Ph.D. June 29, 2016 ____________________________________ Clark D. Wells, Ph.D. ii Dedication To my parents, for their constant support and love iii Acknowledgements First, I would like to thank my advisor, Dr. Tom Hurley, for all of his guidance and mentorship. While always ready to share his insight and advice, he was never the slightest bit overbearing. He continuously placed tremendous amounts of trust in his students by letting us work independently and develop our own ideas and experiments. Dr. Hurley’s attitude and managerial style has been a great boon in helping me grow as a scientist. I am sincerely grateful for his support, kindness, and geniality. Similarly, I’d like to thank my lab mates, Cameron Buchman, Kishore Mahalingan and Buyun Tang, for helping me deal with all manner of issues and predicaments in my lab work. I especially want to thank Cameron for instructing me in so many protocols and techniques, and showing incredible patience and selflessness in answering all of my questions and concerns. I don’t think this work could have been done without his help.