Fresh Fruit/Vegetables Melon, Cucumis Melo from Australia
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Draft Pest Categorisation of Organisms Associated with Washed Ware Potatoes (Solanum Tuberosum) Imported from Other Australian States and Territories
Nucleorhabdovirus Draft pest categorisation of organisms associated with washed ware potatoes (Solanum tuberosum) imported from other Australian states and territories This page is intentionally left blank Contributing authors Bennington JMA Research Officer – Biosecurity and Regulation, Plant Biosecurity Hammond NE Research Officer – Biosecurity and Regulation, Plant Biosecurity Poole MC Research Officer – Biosecurity and Regulation, Plant Biosecurity Shan F Research Officer – Biosecurity and Regulation, Plant Biosecurity Wood CE Technical Officer – Biosecurity and Regulation, Plant Biosecurity Department of Agriculture and Food, Western Australia, December 2016 Document citation DAFWA 2016, Draft pest categorisation of organisms associated with washed ware potatoes (Solanum tuberosum) imported from other Australian states and territories. Department of Agriculture and Food, Western Australia, South Perth. Copyright© Western Australian Agriculture Authority, 2016 Western Australian Government materials, including website pages, documents and online graphics, audio and video are protected by copyright law. Copyright of materials created by or for the Department of Agriculture and Food resides with the Western Australian Agriculture Authority established under the Biosecurity and Agriculture Management Act 2007. Apart from any fair dealing for the purposes of private study, research, criticism or review, as permitted under the provisions of the Copyright Act 1968, no part may be reproduced or reused for any commercial purposes whatsoever -
[email protected]
Import Health Standard Commodity Sub-class: Fresh Fruit/Vegetables Sweet Corn, Zea mays from South Africa Issued pursuant to Section 22 of the Biosecurity Act 1993 Date Issued: 3 November 1997 Amendments 1. 7 September 1998 The status of Cochliobolus carbonum has changed from Quarantine: Risk group 1 to non- regulated non-quarantine. Import Health Standard Commodity Sub-class: Fresh Fruit/Vegetables Sweet Corn, Zea mays from South Africa Pursuant to Section 22 of the Biosecurity Act 1993 Date approved: 29 October 1997 1 NEW ZEALAND NATIONAL PLANT PROTECTION ORGANISATION The New Zealand national plant protection organisation is the Ministry of Agriculture and as such, all communication should be addressed to: Chief Plants Officer Ministry of Agriculture PO Box 2526 Wellington NEW ZEALAND Fax: 64-4-474 4240 E-mail: [email protected] http://www.maf.govt.nz IHS Fresh Fruit/Vegetables. Sweet Corn, Zea mays from South Africa (Biosecurity Act 1993) ISSUED: 29 October 1997 Page 1 of 15 2 GENERAL CONDITIONS FOR ALL PLANT PRODUCTS All plants and plant products are PROHIBITED entry into New Zealand, unless an import health standard has been issued in accordance with Section 22 of the Biosecurity Act 1993. Should prohibited plants or plant products be intercepted by the New Zealand Ministry of Agriculture, the importer will be offered the option of reshipment or destruction of the consignment. The national plant protection organisation of the exporting country is requested to inform the New Zealand Ministry of Agriculture of any change in its address. The national plant protection organisation of the exporting country is required to inform the New Zealand Ministry of Agriculture of any newly recorded organisms which may infest/infect any commodity approved for export to New Zealand. -
An Annotated Check-List of Ascomycota Reported from Soil and Other Terricolous Substrates in Egypt A
Journal of Basic & Applied Mycology 2 (2011): 1-27 1 © 2010 by The Society of Basic & Applied Mycology (EGYPT) An annotated check-list of Ascomycota reported from soil and other terricolous substrates in Egypt A. F. Moustafa* & A. M. Abdel – Azeem Department of Botany, Faculty of Science, University of Suez *Corresponding author: e-mail: Canal, Ismailia 41522, Egypt [email protected] Received 26/6/2010, Accepted 6/4 /2011 ____________________________________________________________________________________________________ Abstract: By screening of available sources of information, it was possible to figure out a range of 310 taxa that could be representing Egyptian Ascomycota up to the present time. In this treatment, concern was given to ascomycetous fungi of almost all terricolous substrates while phytopathogenic and aquatic forms are not included. According to the scheme proposed by Kirk et al. (2008), reported taxa in Egypt belonged to 88 genera in 31 families, and 11 orders. In view of this scheme, very few numbers of taxa remained without certain taxonomic position (incertae sedis). It is also worthy to be mentioned that among species included in the list, twenty-eight are introduced to the ascosporic mycobiota as novel taxa based on type materials collected from Egyptian habitats. The list includes also 19 species which are considered new records to the general mycobiota of Egypt. When species richness and substrate preference, as important ecological parameters, are considered, it has been noticed that Egyptian Ascomycota shows some interesting features noteworthy to be mentioned. At the substrate level, clay soils, came first by hosting a range of 108 taxa followed by desert soils (60 taxa). -
A Worldwide List of Endophytic Fungi with Notes on Ecology and Diversity
Mycosphere 10(1): 798–1079 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/19 A worldwide list of endophytic fungi with notes on ecology and diversity Rashmi M, Kushveer JS and Sarma VV* Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014, Puducherry, India Rashmi M, Kushveer JS, Sarma VV 2019 – A worldwide list of endophytic fungi with notes on ecology and diversity. Mycosphere 10(1), 798–1079, Doi 10.5943/mycosphere/10/1/19 Abstract Endophytic fungi are symptomless internal inhabits of plant tissues. They are implicated in the production of antibiotic and other compounds of therapeutic importance. Ecologically they provide several benefits to plants, including protection from plant pathogens. There have been numerous studies on the biodiversity and ecology of endophytic fungi. Some taxa dominate and occur frequently when compared to others due to adaptations or capabilities to produce different primary and secondary metabolites. It is therefore of interest to examine different fungal species and major taxonomic groups to which these fungi belong for bioactive compound production. In the present paper a list of endophytes based on the available literature is reported. More than 800 genera have been reported worldwide. Dominant genera are Alternaria, Aspergillus, Colletotrichum, Fusarium, Penicillium, and Phoma. Most endophyte studies have been on angiosperms followed by gymnosperms. Among the different substrates, leaf endophytes have been studied and analyzed in more detail when compared to other parts. Most investigations are from Asian countries such as China, India, European countries such as Germany, Spain and the UK in addition to major contributions from Brazil and the USA. -
(12) United States Patent (10) Patent No.: US 8,975.489 B2 Craven (45) Date of Patent: Mar
US008975489B2 (12) United States Patent (10) Patent No.: US 8,975.489 B2 Craven (45) Date of Patent: Mar. 10, 2015 (54) GRASS FUNGAL ENDOPHYTES AND USES (56) References Cited THEREOF U.S. PATENT DOCUMENTS (75) Inventor: Kelly Craven, Ardmore, OK (US) 5,880,343 A ck 3, 1999 Hiruma et al. 800,320 2010.0024.076 A1 1/2010 Craven (73) Assignee: The Samuel Roberts Noble Foundation, Ardmore, OK (US) OTHER PUBLICATIONS (*) Notice: Subject to any disclaimer, the term of this Kawait (GenBank ACCSSO ion No.NO AB518683.1, firstSawaale availabl O li patent is extended or adjusted under 35 Dashtban et al (Int J Biochem Mol Biol 1(1):36-50, first available U.S.C. 154(b) by 218 days. online May 23, 2010).* Chen et al (Functional Plant Biology, 2004, 31, 235-245).* (21) Appl. No.: 13/306,841 Dien etal (Bioenerg. Res. (2009) 2:153-164).* y x- - - 9 USDA Technical Notes, Agronomy #35, NRCS-Iowa, published Jan. 2009.* (22) Filed: Nov. 29, 2011 Gardes et al. "ITS primers with enhanced specificity for Basidimycetes—application to the identification if mycorrhizae and (65) Prior Publication Data rusts.” Molec Ecol. 2: 113-118, 1993. Ghimire etal. “Biodiversity of fungalendophyte communities inhab US 2012/O144,533 A1 Jun. 7, 2012 iting Switchgrass (Panicum virgatum L.) growing in the native tallgrass prairie of northern Oklahoma.” Fungal Diversity. 47(1), 19-27, 2010. Related U.S. Application Data Khu et al., “QTL mappig of aluminum tolerance intetraploid alfalfa.” AV Joint Meeting of the 41 North American Alfalfa Improvement Con (60) Provisional application No. -
Index of Fungal Names
INDEX OF FUNGAL NAMES Alternaria cerealis 187 Alternaria cetera 188–189 Alphabetical list of fungal species, genera and families treated in Alternaria chartarum 201 the Taxonomy sections of the included manuscripts. Alternaria chartarum f. stemphylioides 201 Alternaria cheiranthi 189 A Alternaria chlamydospora 190, 199 Alternaria chlamydosporigena 190 Acicuseptoria 376–377 Alternaria “chlamydosporum” 199 Acicuseptoria rumicis 376–377 Alternaria chrysanthemi 204 Allantozythia 384 Alternaria cichorii 200 Allewia 183 Alternaria cinerariae 202 Allewia eureka 193 Alternaria cinerea 207 Allewia proteae 193 Alternaria cirsinoxia 200 Alternaria 183, 186, 190, 193, 198, 207 Alternaria citriarbusti 187 Alternaria abundans 189 Alternaria citrimacularis 187 Alternaria acalyphicola 200 Alternaria colombiana 187 Alternaria agerati 200 Alternaria concatenata 201 Alternaria agripestis 200 Alternaria conjuncta 196 Alternaria allii 191 Alternaria conoidea 188 Alternaria alternantherae 185 Alternaria “consortiale” 204 Alternaria alternariae 206 Alternaria consortialis 204 Alternaria alternarina 195 Alternaria crassa 200 Alternaria cretica 200 Alternaria alternata 183, 185–186 Alternaria cucumerina 200 Alternaria anagallidis 200 Alternaria cucurbitae 204 Alternaria angustiovoidea 187 Alternaria cumini 193 Alternaria anigozanthi 193 Alternaria cyphomandrae 201 Alternaria aragakii 200 Alternaria danida 201 Alternaria araliae 199 Alternaria dauci 201 Alternaria arborescens 187, 201 Alternaria daucicaulis 196 Alternaria arbusti 195 Alternaria daucifollii 187 -
Esca De La Vigne Et Communauté Fongique
Schweizerische Eidgenossenschaft Station de recherche Agroscope Changins-Wädenswil ACW Confédération suisse Directeur: Jean-Philippe Mayor • www.acw.admin.ch Confederazione Svizzera Confederaziun svizra Esca de la vigne et communauté fongique V. HOFSTETTER, L. CASIERI, O. VIRET et K. GINDRO, Station de recherche Agroscope Changins-Wädenswil ACW, CP 1012, 1260 Nyon E-mail: [email protected] @ Tél. (+41) 22 36 34 374. Résumé Les études s’intéressant aux champignons associés au bois de vigne se limitent généralement aux parties nécrotiques de ceps atteints d’esca. Ces champignons sont nombreux et appartiennent à des groupes systé - matiques très divers. Les espèces fongiques considérées comme res - ponsables de l’esca ont également été isolées de jeunes plantes. Ces ré - sultats suggèrent que l’esca pourrait être due à un déséquilibre de la communauté fongique normalement associée à la vigne. Pour étudier cette hypothèse, la communauté fongique a été isolée de ceps apoplec - tiques et de boutures saines de Chasselas. Les isolats fongiques ont été identifiés sur la base de leur morphologie, de leur vitesse de croissance, de leur expression enzymatique et de leur séquence ITS, puis classés phylogénétiquement par analyse combinée de quatre gènes. Les com - munautés fongiques isolées de bois atteints d’esca et sains sont très semblables et toutes deux dominées par les mêmes groupes de champi - gnons, à savoir les Ascomycètes, principalement de la classe des Sorda - riomycetes (ordre des Hypocreales et Xylariales ), mais les espèces qui les composent diffèrent partiellement. Cette analyse a permis de déterminer l’emplacement phylogénétique, jusqu’à présent incertain, de Phaeomo - niella chlamydospora, Oidiodendron truncatum et Trichothecium roseum dans les Ascomycètes. -
Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Characterising plant pathogen communities and their environmental drivers at a national scale A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by Andreas Makiola Lincoln University, New Zealand 2019 General abstract Plant pathogens play a critical role for global food security, conservation of natural ecosystems and future resilience and sustainability of ecosystem services in general. Thus, it is crucial to understand the large-scale processes that shape plant pathogen communities. The recent drop in DNA sequencing costs offers, for the first time, the opportunity to study multiple plant pathogens simultaneously in their naturally occurring environment effectively at large scale. In this thesis, my aims were (1) to employ next-generation sequencing (NGS) based metabarcoding for the detection and identification of plant pathogens at the ecosystem scale in New Zealand, (2) to characterise plant pathogen communities, and (3) to determine the environmental drivers of these communities. First, I investigated the suitability of NGS for the detection, identification and quantification of plant pathogens using rust fungi as a model system. -
Final Policy Review
Final policy review A categorisation of invertebrate and pathogen organisms associated with fresh table grape bunches (Vitis spp.) imported from other Australian states and territories Supporting your success Contributing authors Bennington JM Research Officer – Biosecurity and Regulation, Plant Biosecurity Hammond NE Research Officer – Biosecurity and Regulation, Plant Biosecurity Hooper RG Research Officer – Biosecurity and Regulation, Plant Biosecurity Jackson SL Research Officer – Biosecurity and Regulation, Plant Biosecurity Poole MC Research Officer – Biosecurity and Regulation, Plant Biosecurity Tuten SJ Senior Policy Officer – Biosecurity and Regulation, Plant Biosecurity Department of Agriculture and Food, Western Australia Document citation DAFWA , Final policy review: A categorisation of invertebrate and pathogen organisms associated with fresh table grape bunches (Vitis spp.) imported from other Australian states and territories. Department of Agriculture and Food, Western Australia, South Perth. Copyright© Western Australian Agriculture Authority, Western Australian Government materials, including website pages, documents and online graphics, audio and video are protected by copyright law. Copyright of materials created by or for the Department of Agriculture and Food resides with the Western Australian Agriculture Authority established under the Biosecurity and Agriculture Management Act 2007. Apart from any fair dealing for the purposes of private study, research, criticism or review, as permitted under the provisions of -
Taxonomic Placement of Sterile Morphotypes of Endophytic Fungi from Pinus Tabulaeformis (Pinaceae) in Northeast China Based on Rdna Sequences
Fungal Diversity Taxonomic placement of sterile morphotypes of endophytic fungi from Pinus tabulaeformis (Pinaceae) in northeast China based on rDNA sequences Yu Wang1, Liang-Dong Guo1* and Kevin D. Hyde2 1Systematic Mycology & Lichenology Laboratory, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, People’s Republic of China 2Centre for Research in Fungal Diversity, Department of Ecology & Biodiversity, The University of Hong Kong, Pokfulam Road, Hong Kong, A.S.R. China Wang, Y., Guo, L.D. and Hyde, K.D. (2005). Taxonomic placement of sterile morphotypes of endophytic fungi from Pinus tabulaeformis (Pinaceae) in northeast China based on rDNA sequences. Fungal Diversity 20: 235-260. In a survey of the endophytic fungi from Pinus tabulaeformis in northeast China, approximately 11% of isolates did not produce spores, although various techniques were employed to promote sporulation. These sterile mycelia were grouped into 74 morphotypes based on similar cultural characters. Arrangement of isolates into morphotypes does not reflect species phylogeny, and therefore they were further identified based on phylogenetic analysis of the 5.8S gene and internal transcribed spacer (ITS1 and ITS2) regions, as well as sequence similarity comparison. Sequence analyses indicated that five morphotypes were Basidiomycota, while the other 69 morphotypes were Ascomycota. Further analyses resulted in two morphotypes being identified as Fusarium sporotrichioides and Schizophyllum commune. Twenty-two morphotypes were identified to generic level, seven to family (Lophiostomataceae and Valsaceae) level, and four to order (Helotiales and Pezizales) level. The 74 morphotypes were classified into 64 taxa, which indicates a high diversity of fungi on Pinus. Key words: endophyte; molecular identification; mycelia sterilia; ribosomal RNA gene. -
Studies in Mycology 75: 213–305
STUDIES IN MYCOLOGY 75: 213–305. A new approach to species delimitation in Septoria G.J.M. Verkley1*, W. Quaedvlieg1,2, H.-D. Shin3, and P.W. Crous1,2,4 1CBS-KNAW Fungal Biodiversity Centre, Upssalalaan 8, 3584 CT, Utrecht, the Netherlands; 2Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands; 3Division of Environmental Science and Ecological Engineering, Korea University, Seoul 136-701, Korea; 4Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands *Correspondence: G.J.M. Verkley, [email protected] Abstract: Septoria is a large genus of asexual morphs of Ascomycota causing leaf spot diseases of many cultivated and wild plants. Host specificity has long been a decisive criterium in species delimitation in Septoria, mainly because of the paucity of useful morphological characters and the high level of variation therein. This study aimed at improving the species delimitation of Septoria by adopting a polyphasic approach, including multilocus DNA sequencing and morphological analyses on the natural substrate and in culture. To this end 365 cultures preserved in CBS, Utrecht, The Netherlands, among which many new isolates obtained from fresh field specimens were sequenced. Herbarium material including many types was also studied. Full descriptions of the morphology in planta and in vitro are provided for 57 species. DNA sequences were generated for seven loci, viz. nuclear ITS and (partial) LSU ribosomal RNA genes, RPB2, actin, calmodulin, Btub, and EF. The robust phylogeny inferred showed that the septoria-like fungi are distributed over three main clades, establishing the genera Septoria s. -
Sizing up Septoria
STUDIES IN MYCOLOGY 75: 307–390. Sizing up Septoria W. Quaedvlieg1,2, G.J.M. Verkley1, H.-D. Shin3, R.W. Barreto4, A.C. Alfenas4, W.J. Swart5, J.Z. Groenewald1, and P.W. Crous1,2,6* 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands; 3Utrecht University, Department of Biology, Microbiology, Padualaan 8, 3584 CH Utrecht, The Netherlands; 2Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands; 3Division of Environmental Science and Ecological Engineering, Korea University, Seoul 136-701, Korea; 4Departamento de Fitopatologia, Universidade Federal de Viçosa, 36750 Viçosa, Minas Gerais, Brazil; 5Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa; 6Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands *Correspondence: Pedro W. Crous, [email protected] Abstract: Septoria represents a genus of plant pathogenic fungi with a wide geographic distribution, commonly associated with leaf spots and stem cankers of a broad range of plant hosts. A major aim of this study was to resolve the phylogenetic generic limits of Septoria, Stagonospora, and other related genera such as Sphaerulina, Phaeosphaeria and Phaeoseptoria using sequences of the the partial 28S nuclear ribosomal RNA and RPB2 genes of a large set of isolates. Based on these results Septoria is shown to be a distinct genus in the Mycosphaerellaceae, which has mycosphaerella-like sexual morphs. Several septoria-like species are now accommodated in Sphaerulina, a genus previously linked to this complex.