<<

Reference: Biol. Bull. 195: 1—4.(August, 1998)

Concepts in Imaging and Microscopy Choosing : The Importance of Numerical and in Digital Optical Microscopy

DAVID W. PISTON Department of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, Tennessee 37232-0615

Abstract. Microscopic images are characterized by a 1, the word “¿FLUAR―describes the type of design; number of -specific parameters—numerical ap although all manufacturers use similar types of designs, erture (NA), magnification (M), and resolution (R)—and the nomenclature varies from company to company. The by parameters that also depend on the specimen—for ex next most notable feature on the objective lens is the ample, contrast, signal-to-noise ratio, dynamic range, and magnification (M), which in the illustration is lOOx. It integration time. In this article, issues associated with the is written in the largest font of all the specifications, yet microscope-specific parameters NA, M, and R are discussed as is discussed here, it is not the most important parame with respect to both widefield and laser scanning confocal ter. This distinction belongs to the microscopies. Although most of the discussion points apply (NA), which is written next to the magnification, but in to optical microscopy in general, the main application con a smaller font, and in this case is 1.30. The immersion sidered is fluorescence microscopy. medium for this objective is also given. Below the magni fication and numerical aperture, the tube length (00) and Introduction the coverslip thickness (0.17 mm) are given. Currently all manufacturers are offering infinity-corrected (de The objective lens is arguably the most important corn noted by the oo symbol), and most lenses are optimally ponent of any light microscope (Keller, 1995). Advances corrected for a number 1.5 coverslip, nominally 170-@zm in digital imaging have completely changed the way that thick. Both of these parameters are important, but the optical microscopy is performed, and have also changed objective lens will still function adequately for many ap the relevant specifications for objective lenses. Although plications with other tube lengths and coverslip thick lens design, construction, and quality have improved to nesses. However, because the manufacturers perform keep up with the requirements of modern light micros chromatic corrections in different ways, multi-color cx copy, the markings on the lenses remain as they have periments—for instance, co-localization of two different been for decades. On the objective lens shown in Figure colored immunofluorescent probes—should be per formed using only sets of optics that were designed to Received13 February1998;accepted28 May 1998. work together. This applies not only to mixing lenses of E-mail:[email protected] different manufacturers, but also to mixing older and This is the second in a series ofarticles entitled “¿Conceptsin Imaging newer lines of optics. The working distance of the objec and Microscopy.―This series is supported by the Opto-Precision Instru tive (the depth into the sample to which the lens can focus ments Association(OPIA)and was introducedwith an editorialin the April 1998 issue of this journal (Biol. Bull. 194: 99). The first article before it runs into the sample) is also a very important in the serieswas writtenby Dr. KennethR. Castlemanand appearedin parameter, especially for in thick the same issue (Biol.Bull. 194: 100—107). biological samples. Despite the critical nature of this spec 1 2 D. W. PISTON

ture are important for the image-formation properties of ,,@- an . Magnification for an optical instru ment is defined as the relative enlargement of the image over the object. Although at first glance it would seem fL-UAF@ best to use the highest magnification possible, the maxi @ OO @@3o mal useful magnification is limited by the resolution of @ 1 j 0.17 the imaging instrument (as described in the next para graph). The definition of numerical aperture is more corn plicated. NA is defined by the half-angle of the objective's collection cone (a) and the index of refraction of the immersion medium (n), and is expressed by NA = @ n sin(a) (Inouéand Spring, 1997, p. 32). The larger the cone of collected light, the higher the NA, and the more light that will be collected. Thus in practice, NA can be thought of as the amount of light that is collected by the objective lens; a high-NA lens collects more light than a low-NA lens. An analogy is with : a larger collects more light just as a lens with a larger NA collects more light. Most optical also offer the option of secondary magnification between the objective lens and the detector. Use of such extra magni Figure 1. An objective lens with typical markings.Althoughthis is a Zeiss lens, most manufacturersuse similarmarkings. fication may sometimes be required (see Table I), but should be avoided if possible since extra light loss is introduced. ification, the working distance is not marked on most As suggested above, resolution (as determined by the lenses. Nikon has now started writing the working dis basic principles oflight) limits the useful mag tance on their CFI6O optics, and it is hoped that this trend nification in an optical microscope. Resolution (R) is de will be followed by the other manufacturers. fined as the smallest distance that two objects can be apart This short article describes the relative importance of and still be discerned as two separate objects. There are magnification and numerical aperture for digital optical mi many mathematical definitions for resolution, but a simple croscopy. Traditionally, observations made with optical mi and reasonable approximation is R = X/(2 . NA), where croscopes were detected by eye, and in this case, the size xisthewavelengthofthelight(InouéandSpring,1997, of the detector pixels—given by physiological factors in p. 31). This relationship indicates that when using a high the human eye—is not optimal, so the magnification was NA lens and 500-nm (blue-green) light, the smallest re increased so the sample could be ‘¿â€˜¿seen'‘¿better. In digital solvable distance is ‘¿-‘@200urn, or 0.2 @.tm,which agrees imaging, however, the magnification can be determined by well with experimental values. One frequent point of con the combination of resolution and detector pixel size. To fusion for microscope users is the difference between understand the relative importance of NA and magnifica spatial resolution (the ability to distinguish multiple oh tion, we must consider the basics of image formation and jects) and spatial precision (the ability to localize a single the effect of lens parameters on the resolution and informa object). Many image-processing enhancements can be tion content in optical microscopy. Because the resolving used to increase the precision of localization. For exam power of an optical microscope is dependent only on the ple, the path of a single microtubule can be determined numerical aperture, magnification should be thought of as to 10 nm precision by pixel-fitting (e.g., Ghosh and a secondary parameter whose optimal value can be deter Webb, 1994) or deconvolution methods (e.g., Agard et mined by the NA, detector pixel size, and other instrument al., 1989; Carrington et al., 1990; Holmes et al., 1995). independent imaging parameters. Thus, NA is a more im However, this is not 10-nm resolution; 10-nm resolution portant parameter than magnification in digital imaging. means that two microtubules that are 10-nm apart can be The practical implications of this conclusion are described recognized as two separate tubules. If multiple objects for two commonly used modes of fluorescence imaging: are small and close together (that is, close enough that widefield epi-fluorescence microscopy with a CCD they cannot be resolved), then no amount of image pro as the detector, and laser scanning confocal microscopy with photomultiplier tube detectors. cessing can differentiate between several individual oh jects and a single object. Basics of Image Formation Since there is a minimum resolvable distance for every As might be guessed by looking at the markings on microscope, continuing to increase the magnification past any objective lens, the magnification and numerical aper a certain point will no longer increase the information CHOOSINGOBJECTIVELENSES 3

content of the image. Further magnification beyond this (usually a CCD camera) that takes the place of the eye. point is sometimes referred to as ‘¿â€˜¿empty'‘¿or meaningless Thus, to optimize the information content of the resulting magnification. This is analogous to any digital image on digital image, the pixels on the detector must be matched a computer, where pixelation is observed when an image to the desired image resolution. As described above, the @ is magnified on the screen (this can be seen, for example, radius of a diffraction-limited spot, R@ X/(2 NA), is by repeatedly using the “¿zoomin―command in Adobe a good quantity to use for the definition of resolution. Photoshop). So the question obviously arises, how should In the image plane, this spot will still give the smallest the correct magnification be chosen? A good rule is to resolvable object, but the width of the spot will now be use the Nyquist criterion, which basically says that one M . R. Based on the Nyquist criterion, the desired sam should collect two points per resolution size (Inouéand pling rate should be twice the resolution, so we want a @ Spring, 1997, p. 513). Collecting images in this manner pixel size in the object of R@1, R@J2. In practice, the maximizes the information content. pixel size in widefield microscopy is fixed by the imaging The use of XI(2 . NA) for the resolution criterion, and camera used, so the magnification is the only variable that of R/2 for the sampling rate are both arbitrary. Many can be adjusted. For the purposes of these calculations, microscopists select other resolution criteria, but all of we can assume X = 0.5 @tm(a good approximation for these choices are only mathematical approximations of fluorescein (FITC) imaging). We can determine the opti the same physical properties. Use of any other resolution mal M to be used for a given pixel size by matching the criteria would not affect the arguments presented here, sampling resolution in the image plane to the pixel size @ although the numbers (e.g., those shown in Table I) would (P) by P = M . . Table I shows the results of this change slightly. calculation for two typical pixel sizes: 24 @tm(an older Some attention should also be given to special consid SITe 512D CCD chip) and 6.8 @m(the more modern erations for fluorescence microscopy (Rost, 1992). Since Kodak KAF1400 CCD chip). As can be seen from the fluorescence is subject to fluorophore saturation and pho table, the older chips (with their larger pixel sizes) require tobleaching effects that do not affect other optical meth higher magnification. For these larger pixels, an extra ods, the highest possible light collection efficiency is de intermediate magnification of 2.5 would be required to sirable. This consideration dictates that the highest possi maximize the information content of an image collected ble NA should be used. However, the highest NA lenses with a lOOx/l .3 NA objective lens, and in fact (NA = 1.40) are usually of a ‘¿â€˜¿plan-Apochromat'‘¿design; that use the older SITe chip usually have some extra this type of lens consists of up to 14 elements and has a magnification built into them. As micro-fabrication tech lower transmittance than a ‘¿â€˜¿Fluor'‘¿design. Also, if aque nology continues to advance, however, the need for high ous samples are used, the actual NA is limited to ‘¿@‘1.2 magnification lenses will decrease. Obviously, it is not because of total internal reflection for higher collection possible to purchase a 72x/l.30 NA lens (although given angles at the interface between water and coverslip (Inoué the popularity of the KAF1400 CCD chip, perhaps it and Spring, 1997, pp. 53—55).For these reasons, fluores should be), so these optimal can only serve cence from an aqueous sample appears brighter through as a guide for selection of the best objective lens. Further a 100x/l.30 NA FLUAR (as shown in Fig. 1) than calculations, such as those presented in the table, reveal through a lOOx/1.40 plan-Apochromat objective lens. that a camera with a pixel size of 5.4 @.tmwould be ideal Finally, it should be noted that improvements in almost for use with many existing lenses, such as 60x/l.4 NA, every aspect of lens design and construction (e.g., corn 40x/0.90 NA, and 25x/0.60 NA. It should be noted, puter design of complex lens combination, automated however, that as pixel sizes get smaller, the dynamic grinding of arbitrary lens shapes, new optical materials range of the detector may be reduced. For instance, the for both lenses and coatings, and computer-controlled thin [email protected] would likely be filled by fewer than 20,000 film deposition for precise optical coatings) make modern counts, which would limit the detector to 14-bit dynamic objective lenses superior to and more reliable than older range. This is in contrast to larger pixel sizes (i.e., the lenses. Although many older lenses are superb, variables 24 @tmin the SITe 512D CCD chip), which can easily during their construction made finding a good one some deliver > 16-bit dynamic range. For applications that what challenging, and many researchers just took what require high precision, such as deconvolution methods, came. Today's lenses are consistently of high quality, smaller pixels may be unworkable. and also offer higher transmission efficiency and lower autofluorescence than did older lenses. Numerical aperture, magnification, and resolution in Numerical aperture, magnification, and resolution in laser scanning microscopy widefield microscopy Much has been made of the improvement in resolution In a digital widefield (conventional fluorescence) mi provided by confocal microscopy. But this improvement croscope, the image is projected onto an imaging detector is at best minimal, and is only attained for extremely 4 D. W. PISTON

Table I Optimal magnificationfor detectors with different pixel sizes calculated for five numerical

(NA)1.401.300.900.600.30Calculated Numerical aperture

(am)Rdjff0.180.190.280.420.831L,,0.0900.0950.1400.2100.415Magnificationresolutions

(x)24-jim pixels*267253171114586.8-jim pixelst7672493216

* Represents the SITe5 l2D CCD chip. t RepresentstheKodakKAF1400CCDchip.

small pinholes. In practical fluorescence microscopy, the widefield and deconvolution methods, as well). Regard pinhole must be opened somewhat to increase the effi less of the lens design, however, a lower magnification ciency of fluorescence collection. In fact, the pinhole is lens (of equivalent NA) is almost always preferable, be almost always opened enough to negate any resolution cause it offers a larger field-of-view, and delivers equiva enhancement (Sandison et al., 1995). In this practical lent resolution. case, there is an improvement in rejection of out-of-focus @ background, but the resolution is still given by R@ Acknowledgments (2 NA), so the ideal sampling resolution remains as shown This work was supported by an Arnold and Mabel in Table I. Beckman Foundation Young Investigator Award, NIH A key point in laser scanning microscopy is that there grant DK53434, and the Vanderbilt Cell Imaging Re is no longer a fixed pixel size. Because the field over source (underwritten by CA68485 and DK20593). which the laser is scanned can be varied (this variation is usually called ‘¿â€˜¿zoom,'‘¿or more appropriately ‘¿â€˜¿elec tronic zoom,' ‘¿and is analogous to using an optical zoom Literature Cited lens), the sampling resolution can be easily changed. For Agard, D. A., Y. Hlraoka, P. Shaw, and J. W. Sedat. 1989. Fluores this reason, users often have a lot of trouble choosing cence microscopy in threedimensions. MethodsCell Biol. 30: 353— lenses when they switch to laser scanning confocal mi 377. Carrlngton, W. A., K. E. Fogarty, and F. S. Fay. 1990. 3D fluores croscopy. For instance, a 40x lens with a zoom factor of cence imaging of single cells using image restoration. Pp. 53—72in 2.5 is basically equivalent to a lOOx lens with no extra Non-invasive Techniques in Cell Biology. J. K. Foskett and S. zoom. Thus, a 40x/1 .3 NA lens should be chosen over Grinstein,eds. Wiley-Liss,New York. an equivalent lOOx/1.3 NA lens, because it offers a poten Ghosh, R. N., and W. W. Webb. 1994. Automated detection and tially larger field of view with no fall-off in light collec trackingof individualandclusteredcell surfacelowdensitylipopro tein receptor molecules. Biophys. J. 66: 1301—1318. tion or resolution. Holmes, T. J., S. Bhattacharyya, J. A. Cooper, D. Hanzel, V. Krlsh In laser scanning confocal microscopy, two other pa namurthi, W. Liii, B. Roysam, D. H. Szarowskl, and J. N. rameters must be considered. First is the size of the detec Turner. 1995. Light microscopic images reconstructed by maxi tor pinhole, which depends on the magnification. Most mum likelihooddeconvolution.Pp. 389—402in The Handbookof confocal microscopes have an adjustable pinhole that is Biological ConfocalMicroscopy, 2nd Edition. J. Pawley, ed. Plenum, New York. easily set to match the magnification (e.g., for equiva Inoué,S., and K. R. Spring. 1997. VideoMicroscopy: the Fundamen lence, a 60x lens needs a pinhole 1.5-fold larger than a tals, 2nd Edition. Plenum, New York. 40x lens). Secondly, the lens design for confocal micros Keller, H. E. 1995. Objectivelensesfor confocalmicroscopy.Pp. copy may, in some cases, be more important than either 111—126in TheHandbookofBiological Confocal Microscopy,2nd M or NA. This is especially true for co-localization exper Edition.J. Pawley,ed. Plenum,New York. iments, in which the chromatic corrections of a plan Rost, F. W. D. 1992. FluorescenceMicroscopy.CambridgeUmver sity Press, Cambridge, UK. Apochromat make it preferable despite its lower light Sandison, D. R., D. W. Piston, R. M. Williams, and W. W. Webb. collection efficiency (the same trade-off must be consid 1995. Resolution,backgroundrejection,and signal-to-noisein ered for any three-dimensional microscopies based on widefieldand confocalmicroscopy.App. Optics34: 3576—3588.