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Identification of Eest-Genome Species in Pseudoroegneria and Elytrigia (Poaceae: Triticeae) by Using SCAR Markers from ITS Sequences Z.H
Identification of EeSt-genome species in Pseudoroegneria and Elytrigia (Poaceae: Triticeae) by using SCAR markers from ITS sequences Z.H. Tao* and L. Yin* Research Center for Preclinical Medicine, Luzhou Medical College, Luzhou, Sichuan Province, China *These authors contributed equally to this study. Corresponding author: L. Yin E-mail: [email protected] Genet. Mol. Res. 14 (1): 815-822 (2015) Received April 15, 2014 Accepted September 23, 2014 Published February 2, 2015 DOI http://dx.doi.org/10.4238/2015.February.2.6 ABSTRACT. To detect EeSt-genome species in Pseudoroegneria and Elytrigia, the primers ES45 (5'-GTAGGCGACGGTTTTCA-3') and ES261 (5'-TCGCTACGTTCTTCATC-3') were designed as sequence characterized amplified region markers based on the 6-base pair indel in internal transcribed spacer 1 (ITS1) regions and conserved sites in the 5.8S regions, respectively. Polymerase chain reaction of ITS fragments in 27 Triticeae accessions was used for amplification with a touchdown thermocycling profile. Two amplicons were purified, sequenced, and aligned. The results indicated that: 1) primers ES45 and ES261 generated the expected products, 2) ITS sequences of EeSt-genome species are characterized by a 6-base pair indel, and 3) 13 taxa in Pseudoroegneria and Elytrigia should be included in Trichopyrum. The primers ES45 and ES261 were useful for detecting ITS fragments with 6-bp indel and are helpful for clarifying taxonomic classifications of eE St-genome species in Triticeae. Key words: Indel; Lophopyrum; Perennial genera; Polyploid Genetics and Molecular Research 14 (1): 815-822 (2015) ©FUNPEC-RP www.funpecrp.com.br Z.H. Tao and L. Yin 816 INTRODUCTION Pseudoroegneria, Elytrigia, and Lophopyrum are 3 perennial genera in tribe Triticeae (Löve, 1984). -
Elytrigia and Elymus (Agropyron)
Plant Crib ELYTRIGIA AND ELYMUS (AGROPYRON) 1. General There are number of problems which can cause confusion in these genera, though the species are themselves usually quite distinct. i) Changes in nomenclature. The current names and recent synonymy are as follows: Elymus caninus (L.) L. (Agropyron caninum) Elytrigia atherica (Link) Kerguélen ex Carreras Mart. (Elymus pycnanthus; Agropyron pungens) Elytrigia juncea (L.) Nevski (Elymus farctus; Agropyron junciforme) Elytrigia repens (L.) Desv. ex Nevski (Elymus repens; Agropyron repens) Leymus arenarius (L.) Hochst. (Elymus arenarius) ii) Plants with awns. Plants of Elytrigia repens with awns are quite common and tend to be recorded as Elymus caninus by the unwary (when the florets of the latter drop or are pulled off, the two glumes stay attached to the stem, but come off with the floret in Elytrigia repens). Elytrigia atherica may also have awns. iii) Both Elytrigia repens and E. atherica may grow on saltmarshes and adjacent banks, especially in the north, and are frequently confused by the unwary if it is assumed only the latter occurs on saltmarshes. iv) Hybrids may be locally frequent near the coast (e.g. E. ´ drucei seems to be much more common in Cumbria than E. atherica, which may not occur at all; Halliday 1997). When the jizz of the parents is known, hybrids can be picked out as intermediate from a few metres away. v) The hairs on the margins of the leaf sheaths may rub off late in the season. In the following rather unsatisfactory key (updated from Wigginton & Graham 1981) an attempt has been made to key out the hybrids, which as a rule have empty anthers. -
Draft Assessment Report on Agropyron Repens (L.) P. Beauv., Rhizoma
07 July 2021 EMA/HMPC/113793/2021 Committee on Herbal Medicinal Products (HMPC) Assessment report on Agropyron repens (L.) P. Beauv., rhizoma Draft Based on Article 16d(1), Article 16f and Article 16h of Directive 2001/83/EC (traditional use) Herbal substance(s) (binomial scientific name of Agropyron repens (L.) P. Beauv., rhizoma the plant, including plant part) Herbal preparation(s) a) Comminuted herbal substance b) Liquid extract (DER 1:1), extraction solvent ethanol 20-25% V/V c) Tincture (ratio of herbal substance to extraction solvent 1:5), extraction solvent ethanol 40% V/V Pharmaceutical form(s) Comminuted herbal substance as herbal tea for oral use. Herbal preparations in liquid dosage forms for oral use. First assessment Rapporteur E Widy-Tyszkiewicz Revision Rapporteur W Dymowski Assessor A Parzonko Peer-reviewer H Pinto-Ferreira Note: This draft assessment report is published to support the public consultation of the draft European Union herbal monograph on Agropyron repens (L.) P. Beauv, rhizoma. It is a working document, not yet edited, and shall be further developed after the release for consultation of the monograph. Interested parties are welcome to submit comments to the HMPC secretariat, which will be taken into consideration but no ‘overview of comments received during the public consultation’ will be prepared on comments that will be received on this assessment report. The publication of this draft assessment report has been agreed to facilitate the understanding by Interested Parties of the assessment that has been carried out so far and led to the preparation of the draft monograph public statement. Official address Domenico Scarlattilaan 6 ● 1083 HS Amsterdam ● The Netherlands Address for visits and deliveries Refer to www.ema.europa.eu/how-to-find-us Send us a question Go to www.ema.europa.eu/contact Telephone +31 (0)88 781 6000 An agency of the European Union © European Medicines Agency, 2021. -
Biological Survey of a Prairie Landscape in Montana's Glaciated
Biological Survey of a Prairie Landscape in Montanas Glaciated Plains Final Report Prepared for: Bureau of Land Management Prepared by: Stephen V. Cooper, Catherine Jean and Paul Hendricks December, 2001 Biological Survey of a Prairie Landscape in Montanas Glaciated Plains Final Report 2001 Montana Natural Heritage Program Montana State Library P.O. Box 201800 Helena, Montana 59620-1800 (406) 444-3009 BLM Agreement number 1422E930A960015 Task Order # 25 This document should be cited as: Cooper, S. V., C. Jean and P. Hendricks. 2001. Biological Survey of a Prairie Landscape in Montanas Glaciated Plains. Report to the Bureau of Land Management. Montana Natural Heritage Pro- gram, Helena. 24 pp. plus appendices. Executive Summary Throughout much of the Great Plains, grasslands limited number of Black-tailed Prairie Dog have been converted to agricultural production colonies that provide breeding sites for Burrow- and as a result, tall-grass prairie has been ing Owls. Swift Fox now reoccupies some reduced to mere fragments. While more intact, portions of the landscape following releases the loss of mid - and short- grass prairie has lead during the last decade in Canada. Great Plains to a significant reduction of prairie habitat Toad and Northern Leopard Frog, in decline important for grassland obligate species. During elsewhere, still occupy some wetlands and the last few decades, grassland nesting birds permanent streams. Additional surveys will have shown consistently steeper population likely reveal the presence of other vertebrate declines over a wider geographic area than any species, especially amphibians, reptiles, and other group of North American bird species small mammals, of conservation concern in (Knopf 1994), and this alarming trend has been Montana. -
An Ecological Model to Classify and Monitor Mountain Plover Nesting Habitat on Grasslands in Colorado
AN ECOLOGICAL MODEL TO CLASSIFY AND MONITOR MOUNTAIN PLOVER NESTING HABITAT ON GRASSLANDS IN COLORADO Daniel W. Uresk, USDA Forest Service, Rapid City SD 57701 ABSTRACT A multivariate statistical model based on vegetation and soil surface characteristics was developed to classify and monitor mountain plover (Charadrius montanus) habitat groupings and nest selection. Data were collected on the shortgrass prairie, Pawnee National Grassland, Colorado. Vegetation and soil surface characteristics were sampled from late April to early June of 1999 and 2000 during the nesting season. Samples were collected on random sites in 43 sections and at 54 nest sites within adjacent townships. Random data were clustered into three habitat groups consisting of high, mid and low nesting habitat. Key variables in the model for classifying and monitoring nest habitat were percent bare ground, percent canopy cover for blue grama (Bouteloua gracilis) and buffalograss (Bouteloua dactyloides). The three nest habitat groupings were quantitatively identified with an estimated 97 percent accuracy. The model classified the 54 mountain plover nest sites as either high, mid or low nesting habitat. High mountain plover nest preference (39 nests) for bare ground was 46 percent, with blue grammar 27 percent and buffalograss at 2 percent (n = 39 nest sites). Mid classified nests (12) selected 23 percent bare ground, 60 percent blue grama and 1 percent buffalograss. Three nests were classified as low nesting habitat, which exhibited 25 percent bare ground, 41 percent buffalograss and 17 percent blue grama. Mountain plovers selected nest sites that had short plant structure, a mean visual obstruction reading (VOR) of 0.25 cm at nesting and ranged from 0 to 1.6 cm. -
ORIGIN, BIOGEOGRAPHICAL MIGRATIONS and DIVERSIFICATIONS of TURFGRASSES James B Beard1
Research Report | SR132 ORIGIN, BIOGEOGRAPHICAL MIGRATIONS AND DIVERSIFICATIONS OF TURFGRASSES James B Beard1 Executive Summary Whether a turfgrass species is characterized as Primitive ancestral grasses are now proposed native or naturalized to North America has been to have appeared during the Late Cretaceous based on world-wide simplistic observations between 65 and 96 mya (million years ago) in focused on where the greatest genetic diversity Gondwanan Africa. The ancestral Pooideae are occurred, termed center-of-origin. Research infor- estimated to have migrated to the steppes of mation as to dating and locations of subsequent Laurasian Eurasia during the Eocene ~ 38 to migration and diversification has been minimal 47 mya. Taxonomic divergence of the base C3 due to a lack of needed research technologies. Pooideae group appears to have been initiated in Intercontinental migration of grasses has been Europe ~ 26 to 33.5 mya. The base C4 Pooideae assumed to have been unlikely due to oceanic apparently arose in Africa ~ 30 to 33 mya, followed separation. Recent development of paleobotanical by migration to West Gondwana South America studies using ultrastructural electron microscopic and to East Gondwana India and Australia. techniques and stable carbon isotope dating instrumentation and research procedures, plus Diversification led to the emergence of an ancient molecular phylogenetic research and cladistic Poeae group known as the fine-leaf fescues biogeographic analysis of large data sets are (Festuca) in central-Europe during the mid- clarifying our understanding of migration patterns Miocene ~ 13 mya. Subsequent migration occurred and dating of multiple secondary centers-of-origin via the mountains of central and eastern Asia, for grasses. -
Biology Habitat Management Options Weeds: Quackgrass(Elymus Repens (Elytrigia Repens, Agropyron Repens))
Page: 1 (revision date:4/7/2021) Weeds: Quackgrass(Elymus repens (Elytrigia repens, Agropyron repens)) family: Poaceae (Graminae) cycle Perennial plant type: Grass Use Integrated Pest Management (IPM) for successful plant problem management. Biology Quackgrass is a perennial grass which spreads by both seeds and rhizomes, forming dense clumps if left unchecked. The spreading rhizomes are typically pale yellow in color and sharply pointed at the tips. Uncut plants are one to three feet high. The leaves are narrow and flat with rough upper surfaces. Leaf blades are frequently constricted near the tip, which helps in identifying non-flowering plants. The seed head of flowering plants consists of two rows of spikelets on opposite sides of the spike. The seed head is typically six to ten inches long. SPECIAL INFORMATION: Quackgrass can be difficult to eradicate once established. Repeated cultivation to expose and cut up the rhizomes has been effective in some areas. In Oregon, quackgrass is on the noxious weed quarantine list, which prohibits sale, purchase, and transport of plants, seeds, and plant parts. Habitat Quackgrass is common in fields, grasslands, and waste areas on fertile soils. It may invade newly planted lawns, and also may become a problem in home gardens and ornamental plantings. Management Options Non-Chemical Management ~ Digging and carefully removing all rhizomes will effectively eliminate single plants and small infestations. ~ However, this is very time consuming and frustrating. Select non-chemical management options as your first choice! Chemical Management IMPORTANT: Visit Home and Garden Fact Sheets for more information on using pesticides Apply according to label directions. -
Variation in Elymus Repens Susceptibility to Glyphosate
Variation in Elymus repens susceptibility to glyphosate Lin Å. Espeby, Håkan Fogelfors, Sara Sjödal and Per Milberg Linköping University Post Print N.B.: When citing this work, cite the original article. This is an electronic version of an article published in: Lin Å. Espeby, Håkan Fogelfors, Sara Sjödal and Per Milberg, Variation in <em>Elymus repens</em> susceptibility to glyphosate, 2014, Acta Agriculturae Scandinavica - Section B, (64), 3, 211-219. Acta Agriculturae Scandinavica - Section B is available online at informaworldTM: http://dx.doi.org/10.1080/09064710.2014.901408 Copyright: Taylor & Francis: STM, Behavioural Science and Public Health Titles http://www.tandf.co.uk/journals/default.asp Postprint available at: Linköping University Electronic Press http://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-106663 1 Variation in Elymus repens susceptibility to glyphosate Liv Å. Espebya, Håkan Fogelforsa, Sara Sjödala & Per Milberga,b aDepartment of Crop Production Ecology, Swedish University of Agricultural Sciences, Box 7043, SE-750 07 Uppsala, Sweden bIFM Biology, Conservation Ecology Group, Linköping University, SE-581 83 Linköping, Sweden Running title: Variation in Elymus repens The authors have no commercial interest in the findings presented. Correspondence to: Per Milberg, IFM Biology, Linköping University, SE-581 83 Linköping, Sweden Email: [email protected] 2 Figure 2 Tables Approximately 5 600 words 2 Abstract Continuous increase in glyphosate use in Sweden has caused concern about resistance development, not least in connection with the possible introduction of crops resistant to glyphosate. In Sweden, the main weed targeted by glyphosate is Elymus repens (L.) Gould. -
A Survey of the Elymus L. S. L. Species Complex (Triticeae, Poaceae) in Italy: Taxa and Nothotaxa, New Combinations and Identification Key
Natural History Sciences. Atti Soc. it. Sci. nat. Museo civ. Stor. nat. Milano, 5 (2): 57-64, 2018 DOI: 10.4081/nhs.2018.392 A survey of the Elymus L. s. l. species complex (Triticeae, Poaceae) in Italy: taxa and nothotaxa, new combinations and identification key Enrico Banfi Abstract - Elymus s. l. is a critical topic on which only a little INTRODUCTION light has begun to be made regarding phylogenetic reticulation, Elymus L. s. l. is one of the most debated topic among genome evolution and consistency of genera. In Italy, Elymus s. l. officially includes ten species (nine native, one alien) and some genera within the tribe Triticeae (Poaceae), with represen- well-established and widespread hybrids generally not treated as tatives spread all over the world. It has been the subject little or nothing is known of them. In this paper fourteen species of basic studies (Löve A., 1984; Dewey, 1984) that have (with two subspecies) and six hybrids are taken into account and opened important horizons not only in the field of agroge- the following seven new combinations are proposed: Thinopyrum netic research, but also and especially on systematics and acutum (DC.) Banfi, Thinopyrum corsicum (Hack.) Banfi, Thi- taxonomy. However, the still rather coarse knowledge of nopyrum intermedium (Host) Barkworth & Dewey subsp. pouzolzii (Godr.) Banfi, Thinopyrum obtusiflorum (DC.) Banfi, Thinopyrum the genomes and the lack of a satisfactory interpretation ×duvalii (Loret) Banfi, ×Thinoelymus drucei (Stace) Banfi, ×Thi- of their role in the highly reticulate phylogeny of Triticeae noelymus mucronatus (Opiz) Banfi. Some observations are pro- for a long time discouraged taxonomists to clarify species vided for each subject and a key to species, subspecies and hybrids relationships within Elymus s. -
Quackgrass Elymus Repens (L.) Gould
quackgrass Elymus repens (L.) Gould Synonyms: Agropyron junceum var. repens (L.) M. Marsson, A. repens (L.) Beauv., A. repens var. aristatum (Döll) Roshev., A. repens f. aristatum (Schumach.) Holmb., A. repens f. geniculatum Farw., A. repens f. heberhachis Fernald, A. repens var. nemorale Andersson ex. Farw., A. repens var. pilosum Scribn., A. repens f. pilosum (Scribn.) Fernald, A. repens subvar. pubescens (Döll) Litard., A. repens var. pubescens (Döll) Tzvelev, A. repens var. repens (L.) P. Beauv., A. repens f. repens (L.) P. Beauv., A. repens f. setiferum Fernald, A. repens f. stoloniferum Farw., A. repens var. subulatum (Schweg. ex Schweigg. & Körte) Rchb., A. repens var. subulatum Roem. & Schult., A. repens f. trichorrhachis Rohlena, A. repens f. vaillantianum (Wulfen & Schreb.) Roem. & Schult., A. repens var. vulgare Döll, A. sachalinense Honda, A. subulatum (Schreb. ex Schweigg. & Körte) Herter, A. vaillantianum (Wulfen & Schreb.) Trautv., Braconotia officinarum Godr., Elymus neogaeus Steud., E. repens var. aristatus (Schreb. ex Baumg.) Melderis & D. C. McClint, E. vaillantianus (Wulfen & Schreb.) K. B. Jensen, Elytrigia repens (L.) Desv. ex Nevski, E. repens (L.) Desv. ex B. D. Jackson, E. repens var. aristata Prokudin, E. repens ssp. caesia (J. Presl. & C. Presl.) Dostál, E. repens var. caesium (J. Presl. & C. Presl.) Prokudin, E. repens var. glauca (Döll) Tzvelev, E. repens var. pubescens (Döll) Prokudin, E. repens var. repens (L.) Desv. B. D. Jackson, E. repens var. subulatum (Roem. & Schult.) Prokudin, E. repens var. vaillantiana (Wulfen & Schreb.) Prokudin, E. repens var. vaillantianum (Wulfen & Schreb.) Prokudin, E. vaillantiana (Wulfen & Schreb.) Beetle, E. vaillantianum (Wulfen & Schreb.) Beetle, Trisetum repens ssp. magellanicum (E. Desv.) Macloskie, Triticum infestum Salisb., T. -
Prairiemonitoring Dogpacket
texas parks & wildlife By Marsha E. May, Vicki Sybert and Heather Cardella Texas Black-tailed PrairieMonitoring DogPacket lack-tailed prairie dogs Unfortunately throughout their (Cynomys ludovicianus) are an range there has been a drastic de- Bicon of the grasslands. These cline in the population. Black-tailed animals were once common in short prairie dog colonies currently occupy and mixed grass prairies throughout less than 1% of their historic range the western mid-west, including (See Map on pg 2). Historically, mil- Texas, Oklahoma, Arizona, Colo- lions of acres of Texas grassland were rado, Kansas, Montana, Nebraska, covered by prairie dog towns, today New Mexico, South Dakota, North they cover less than 150,000 acres. Dakota and Wyoming, as well as The major factor affecting population Canada and Mexico. Field notes from decline is loss of habitat due to con- early explorers, museum specimens, version of native prairies to cropland. and turn-of-the-century accounts in Other factors include poisoning, the literature contain information recreational shooting, the pet trade upon which the historical range of and Sylvatic Plague. the black-tailed prairie dog in Texas Prairie dogs are an important part is based (Bailey 1905). Although of the ecosystem, their digging aerates these accounts provide useful in- and promotes soil formation, they formation, they are not scientifi- clip back brush maintaining the short cally accurate estimates of the total grass prairie and they are a keystone number of acres that were inhabited. species providing food and shelter for Offering Texans Bailey (1905) described the range of as many as 170 different animals. -
Desirable Characteristics in Perennial Triticeae Collected in China for Wheat Improvement
Hereditas 116: 175-1 78 (1992) Desirable characteristics in perennial Triticeae collected in China for wheat improvement Y. S. DONG', R. H. ZHOU', S. J. XU', L. H. LI', Y. CAUDERON2 and R. R-C. WANG3 ' Institute of Crop Germplasm Resources, Chinese Academy of Agricultural Sciences, Beijing 1OOO81, People's Republic of China INRA, 15 Avenue Mirabeau, 78000 Versaiiles, France ' USDA-ARS, Forage and Range Research, Utah State University, Logan, UT 84322-6300, USA DONG,Y. S., ZHOU, R. H., Xu, S. J., LI, L. H., CAUDERON,Y. and WANG,R. R-C. 1992. Desirable characteristics in perennial Triticeae collected in China for wheat improvement. - Hereditas 116: 175- 178. Lund, Sweden. ISSN 0018-0661. Received August 2, 1991. Accepted November 19, 1991 Perennial Triticeae in China contain an enormous gene pool that has a great potential for Wheat improvement. Collecting expeditions to 12 provinces of Northern China have been carried out. It has been found that most collections of Agropyron mongolicum, A. cristatum, A. desertorurn, and Leymus chinensis, L. secalinus are drought tolerant, and that some collections of Hordeum brevisubularum, Leymus chinensis are tolerant to saline-alkali soil. 443 accessions of perennial Triticeae were screened for resistance to powdery mildew, 248 accessions and 93 accessions were screened for resistance to BYDV strains PAV and RPV, respecitvely, and some species resistant to the diseases were found. A brief description of utilization of perennial Triticeae for wheat improvement in China is given in this paper. Y. S. Dong, Institute of Crop Germplasm Resources, Chinese Academy of Agriculrural Sciences, Beijing 10008/, People's Republic of China Genetic diversity is the prerequisite in breeding to several diseases, valuable germplasm was iden- efforts for crop improvement.