Peltigerales, Lecanoromycetes )
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Leightoniella Zeylanensis Belongs to the Pannariaceae
doi: 10.1111/njb.01880 00 1–6 NORDIC JOURNAL OF BOTANY Research Leightoniella zeylanensis belongs to the Pannariaceae Gothamie Weerakoon, André Aptroot, Mats Wedin and Stefan Ekman G. Weerakoon (https://orcid.org/0000-0002-9550-2139), Algae, Fungi and Plant Division, Dept of Life Sciences, The Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom. – A. Aptroot (https://orcid.org/0000-0001-7949-2594), ABL Herbarium, XK Soest, the Netherlands. – M. Wedin (https://orcid.org/0000-0002-8295-5198), Swedish Museum of Natural History, Dept of Botany, Stockholm, Sweden. – S. Ekman (https://orcid. org/0000-0003-3021-1821) ([email protected]), Museum of Evolution, Uppsala Univ., Uppsala, Sweden. Nordic Journal of Botany Recent finds ofLeightoniella zeylanensis, classified variously in the Collemataceae and 2018: e01880 Pannariaceae, enabled us to generate DNA sequence data for investigating its phy- doi: 10.1111/njb.01880 logenetic affiliation. Newly generated sequence data from the internal transcribed spacer (ITS) region and the large subunit of the nuclear ribosomal DNA (nrLSU), Subject Editor and the small subunit of the mitochondrial ribosomal (mrSSU) DNA, and the largest sub- Editor-in-Chief: Torbjörn Tyler unit of the RNA polymerase II gene (RPB1) indicate that L. zeylanensis is a member Accepted 1 June 2018 of the Pannariaceae, belonging to a strongly supported clade together with Physma, Lepidocollema, and Gibbosporina (= the ‘Physma clade’). With the currently available data, however, relationships within this clade are largely impossible to reconstruct with confidence. Leightoniella zeylanensis was found to possess ellipsoid ascospores surrounded by a thick, gelatinous perispore with pointed ends, supporting a previously published hypothesis that such a perispore type is a synapomorphy for the Physma clade. -
Cuivre Bryophytes
Trip Report for: Cuivre River State Park Species Count: 335 Date: Multiple Visits Lincoln County Agency: MODNR Location: Lincoln Hills - Bryophytes Participants: Bryophytes from Natural Resource Inventory Database Bryophyte List from NRIDS and Bruce Schuette Species Name (Synonym) Common Name Family COFC COFW Acarospora unknown Identified only to Genus Acarosporaceae Lichen Acrocordia megalospora a lichen Monoblastiaceae Lichen Amandinea dakotensis a button lichen (crustose) Physiaceae Lichen Amandinea polyspora a button lichen (crustose) Physiaceae Lichen Amandinea punctata a lichen Physiaceae Lichen Amanita citrina Citron Amanita Amanitaceae Fungi Amanita fulva Tawny Gresette Amanitaceae Fungi Amanita vaginata Grisette Amanitaceae Fungi Amblystegium varium common willow moss Amblystegiaceae Moss Anisomeridium biforme a lichen Monoblastiaceae Lichen Anisomeridium polypori a crustose lichen Monoblastiaceae Lichen Anomodon attenuatus common tree apron moss Anomodontaceae Moss Anomodon minor tree apron moss Anomodontaceae Moss Anomodon rostratus velvet tree apron moss Anomodontaceae Moss Armillaria tabescens Ringless Honey Mushroom Tricholomataceae Fungi Arthonia caesia a lichen Arthoniaceae Lichen Arthonia punctiformis a lichen Arthoniaceae Lichen Arthonia rubella a lichen Arthoniaceae Lichen Arthothelium spectabile a lichen Uncertain Lichen Arthothelium taediosum a lichen Uncertain Lichen Aspicilia caesiocinerea a lichen Hymeneliaceae Lichen Aspicilia cinerea a lichen Hymeneliaceae Lichen Aspicilia contorta a lichen Hymeneliaceae Lichen -
Insights Into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont
Insights into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont Katja Fedrowitz Faculty of Natural Resources and Agricultural Sciences Department of Ecology Uppsala Doctoral Thesis Swedish University of Agricultural Sciences Uppsala 2011 Acta Universitatis agriculturae Sueciae 2011:96 Cover: Lobaria pulmonaria, Nephroma bellum, and fallen bark in an old-growth forest in Finland with Populus tremula. Part of the tRNALeu (UAA) sequence in an alignment. (photos: K. Fedrowitz) ISSN 1652-6880 ISBN 978-91-576-7640-5 © 2011 Katja Fedrowitz, Uppsala Print: SLU Service/Repro, Uppsala 2011 Insights into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont Abstract Nature conservation requires an in-depth understanding of the ecological processes that influence species persistence in the different phases of a species life. In lichens, these phases comprise dispersal, establishment, and growth. This thesis aimed at increasing the knowledge on epiphytic cyanolichens by studying different aspects linked to these life stages, including species colonization extinction dynamics, survival and vitality of lichen transplants, and the genetic symbiont diversity in the genus Nephroma. Paper I reveals that local colonizations, stochastic, and deterministic extinctions occur in several epiphytic macrolichens. Species habitat-tracking metapopulation dynamics could partly be explained by habitat quality and size, spatial connectivity, and possibly facilitation by photobiont sharing. Simulations of species future persistence suggest stand-level extinction risk for some infrequent sexually dispersed species, especially when assuming low tree numbers and observed tree fall rates. Forestry practices influence the natural occurrence of species, and retention of trees at logging is one measure to maintain biodiversity. However, their long-term benefit for biodiversity is still discussed. -
Pannariaceae Generic Taxonomy LL Ver. 27.9.2013.Docx
http://www.diva-portal.org Preprint This is the submitted version of a paper published in The Lichenologist. Citation for the original published paper (version of record): Ekman, S. (2014) Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota). The Lichenologist, 46: 627-656 http://dx.doi.org/10.1017/S002428291400019X Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:nrm:diva-943 Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota) Stefan EKMAN, Mats WEDIN, Louise LINDBLOM & Per M. JØRGENSEN S. Ekman (corresponding author): Museum of Evolution, Uppsala University, Norbyvägen 16, SE –75236 Uppsala, Sweden. Email: [email protected] M. Wedin: Dept. of Botany, Swedish Museum of Natural History, Box 50007, SE –10405 Stockholm, Sweden. L. Lindblom and P. M. Jørgensen: Dept. of Natural History, University Museum of Bergen, Box 7800, NO –5020 Bergen, Norway. Abstract: We estimated phylogeny in the lichen-forming ascomycete family Pannariaceae. We specifically modelled spatial (across-site) heterogeneity in nucleotide frequencies, as models not incorporating this heterogeneity were found to be inadequate for our data. Model adequacy was measured here as the ability of the model to reconstruct nucleotide diversity per site in the original sequence data. A potential non-orthologue in the internal transcribed spacer region (ITS) of Degelia plumbea was observed. We propose a revised generic classification for the Pannariaceae, accepting 30 genera, based on our phylogeny, previously published phylogenies, as well as morphological and chemical data available. -
Biological Soil Crust Community Types Differ in Key Ecological Functions
UC Riverside UC Riverside Previously Published Works Title Biological soil crust community types differ in key ecological functions Permalink https://escholarship.org/uc/item/2cs0f55w Authors Pietrasiak, Nicole David Lam Jeffrey R. Johansen et al. Publication Date 2013-10-01 DOI 10.1016/j.soilbio.2013.05.011 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Soil Biology & Biochemistry 65 (2013) 168e171 Contents lists available at SciVerse ScienceDirect Soil Biology & Biochemistry journal homepage: www.elsevier.com/locate/soilbio Short communication Biological soil crust community types differ in key ecological functions Nicole Pietrasiak a,*, John U. Regus b, Jeffrey R. Johansen c,e, David Lam a, Joel L. Sachs b, Louis S. Santiago d a University of California, Riverside, Soil and Water Sciences Program, Department of Environmental Sciences, 2258 Geology Building, Riverside, CA 92521, USA b University of California, Riverside, Department of Biology, University of California, Riverside, CA 92521, USA c Biology Department, John Carroll University, 1 John Carroll Blvd., University Heights, OH 44118, USA d University of California, Riverside, Botany & Plant Sciences Department, 3113 Bachelor Hall, Riverside, CA 92521, USA e Department of Botany, Faculty of Science, University of South Bohemia, Branisovska 31, 370 05 Ceske Budejovice, Czech Republic article info abstract Article history: Soil stability, nitrogen and carbon fixation were assessed for eight biological soil crust community types Received 22 February 2013 within a Mojave Desert wilderness site. Cyanolichen crust outperformed all other crusts in multi- Received in revised form functionality whereas incipient crust had the poorest performance. A finely divided classification of 17 May 2013 biological soil crust communities improves estimation of ecosystem function and strengthens the Accepted 18 May 2013 accuracy of landscape-scale assessments. -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
Clementeana 13. 2011
CLEMENTEANA Boletín de la SOCIEDAD ESPAÑOLA DE LIQUENOLOGÍA (SEL) Ramalina clementeana nº 13. Barcelona, octubre 2011 Editor: N.L. Hladun Dept. Biología Vegetal (Botánica) Universidad de Barcelona Diagonal 643 08028 Barcelona, España tel: +34-3-403 98 65; fax: +34-3-411 28 42 Email: [email protected] Publicaciones de la Sociedad Española de Líquenologia Clementeana es el boletín oficial de la Sociedad Española de Liquenología (SEL). Se publica, un número Flora Liquenológica Ibérica por año, en castellano, con colaboraciones seleccionadas en inglés, francés o alemán. Las colaboraciones se deben hacer llegar al editor antes del 30 de noviembre, para que pueda ser publicado en el mes de enero. Se Vol 1: Peltigerales: Lobariaceae, Nephromataceae, Peltigeraceae. 2003. (BURGAZ, ruega que los escritos sean remitidos en soporte magnético de 3.5" en procesador de Word. A.R. & MARTÍNEZ). Vol 2: Ostropales: Graphidaceae ( CARBALLAL, R. & LÓPEZ DE SILANES, La SEL está abierta a todas aquellas personas interesadas en el estudio de los líquenes. La cuota es de 30 € año para los socios de número y de 15 € para los socios estudiantes, si el pago se realiza por domiciliación M.E:), Solorinellaceae (LÓPEZ DE SILANES, M.E:),; Gyalectales: Gyalectaceae. bancaria o en su defecto por transferencia, a la cc 2100-0555-35-0200632868 de la Caixa de Pensions, (PAZ-BERMÚDEZ, G.; LÓPEZ DE SILANES, M.E:; ÁLVAREZ, J.), 2004. oficina Central-Diagonal (Barcelona). Si se efectua mediante talón nominativo, a favor de la Sociedad Vol 3. Lecanorales: Bacidiaceae I. 2007. (LLOP, E.) Española de Liquenología, el importe será de 33 ó 18 debido a los gastos bancarios. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
The Macroevolutionary Dynamics of Symbiotic and Phenotypic Diversification in Lichens
The macroevolutionary dynamics of symbiotic and phenotypic diversification in lichens Matthew P. Nelsena,1, Robert Lückingb, C. Kevin Boycec, H. Thorsten Lumbscha, and Richard H. Reea aDepartment of Science and Education, Negaunee Integrative Research Center, The Field Museum, Chicago, IL 60605; bBotanischer Garten und Botanisches Museum, Freie Universität Berlin, 14195 Berlin, Germany; and cDepartment of Geological Sciences, Stanford University, Stanford, CA 94305 Edited by Joan E. Strassmann, Washington University in St. Louis, St. Louis, MO, and approved July 14, 2020 (received for review February 6, 2020) Symbioses are evolutionarily pervasive and play fundamental roles macroevolutionary consequences of ant–plant interactions (15–19). in structuring ecosystems, yet our understanding of their macroevo- However, insufficient attention has been paid to one of the most lutionary origins, persistence, and consequences is incomplete. We iconic examples of symbiosis (20, 21): Lichens. traced the macroevolutionary history of symbiotic and phenotypic Lichens are stable associations between a mycobiont (fungus) diversification in an iconic symbiosis, lichens. By inferring the most and photobiont (eukaryotic alga or cyanobacterium). The pho- comprehensive time-scaled phylogeny of lichen-forming fungi (LFF) tobiont supplies the heterotrophic fungus with photosynthetically to date (over 3,300 species), we identified shifts among symbiont derived carbohydrates, while the mycobiont provides the pho- classes that broadly coincided with the convergent -
Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska
AN ABSTRACT OF THE THESIS OF Kaleigh Spickerman for the degree of Master of Science in Botany and Plant Pathology presented on June 11, 2015 Title: Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska Abstract approved: ______________________________________________________ Bruce McCune Functional traits of vascular plants have been an important component of ecological studies for a number of years; however, in more recent times vascular plant ecologists have begun to formalize a set of key traits and universal system of trait measurement. Many recent studies hypothesize global generality of trait patterns, which would allow for comparison among ecosystems and biomes and provide a foundation for general rules and theories, the so-called “Holy Grail” of ecology. However, the majority of these studies focus on functional trait patterns of vascular plants, with a minority examining the patterns of cryptograms such as lichens. Lichens are an important component of many ecosystems due to their contributions to biodiversity and their key ecosystem services, such as contributions to mineral and hydrological cycles and ecosystem food webs. Lichens are also of special interest because of their reliance on atmospheric deposition for nutrients and water, which makes them particularly sensitive to air pollution. Therefore, they are often used as bioindicators of air pollution, climate change, and general ecosystem health. This thesis examines the functional trait patterns of lichens in two contrasting regions with fundamentally different kinds of data. To better understand the patterns of lichen functional traits, we examined reproductive, morphological, and chemical trait variation along precipitation and temperature gradients in Oregon. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Testing Generic Delimitations in Collemataceae (Peltigerales, Lecanoromycetes) Mycokeys, 47: 17-33
http://www.diva-portal.org This is the published version of a paper published in MycoKeys. Citation for the original published paper (version of record): Kosuthova, A., Westberg, M., Otálora, M A., Wedin, M. (2019) Rostania revisited – testing generic delimitations in Collemataceae (Peltigerales, Lecanoromycetes) MycoKeys, 47: 17-33 https://doi.org/10.3897/mycokeys.47.32227 Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:nrm:diva-3330 A peer-reviewed open-access journal MycoKeys 47: 17–33 (2019)Rostania revised: testing generic delimitations in Collemataceae 17 doi: 10.3897/mycokeys.47.32227 RESEARCH ARTICLE MycoKeys http://mycokeys.pensoft.net Launched to accelerate biodiversity research Rostania revised: testing generic delimitations in Collemataceae (Peltigerales, Lecanoromycetes) Alica Košuthová1, Martin Westberg2, Mónica A.G. Otálora3, Mats Wedin1 1 Department of Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Swe- den 2 Museum of Evolution, Uppsala University, Norbyvägen 16, SE-752 36, Uppsala, Sweden 3 Plant Eco- logical Genetics, Institute of Integrative Biology, ETH Zurich, Universitätstrasse 16, 8092 Zurich, Switzerland Corresponding author: Alica Košuthová ([email protected]) Academic editor: T. Lumbsch | Received 6 December 2018 | Accepted 18 January 2019 | Published 20 February 2019 Citation: Košuthová A, Westberg M, Otálora MAG, Wedin M (2019) Rostania revised: testing generic delimitations in Collemataceae (Peltigerales, Lecanoromycetes). MycoKeys 47: 17–33. https://doi.org/10.3897/mycokeys.47.32227 Abstract Here, we test the current generic delimitation of Rostania (Collemataceae, Peltigerales, Ascomycota) utilizing molecular phylogeny and morphological investigations.