Volvariella Volvacea
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A Genetic Analysis of the Life Cycle of Volvariella volvacea by He Xiaoyi Thesis submitted as partial fulfillment for the degree of Master of Philosophy February, 1996 Division of Biology Graduate School The Chinese University ofHong Kong RECEIVED - 5 AUG 199? ^M^ (n 2 2 m 1998 jiJ ^¾ U^'IVERSiTY ~iM \^>vLiBRARY SYSTEMyW X^^^ iK^SffliMMMMBBMHHlB^BBHMMMW———M^^BM^MI^^^^^^^^^^MI^M^MIMB Statement All the experimental works reported in this thesis were performed by the author unless specially stated otherwise in the text. He Xiaoyi Abstract Volvariella volvacea is the most popular fresh mushroom in Hong Kong. Li order to find out whether genetic variation exists in V. volvacea’ a genetical analysis was carried out. Strain V34 was used and AP-PCR (arbitrarily-primed polymerase chain reaction) was employed to detect genetic variations. The released protoplasts from vegetative mycelium were regenerated and the regeneration frequency in this study was 10.9%. F1 and F2 single spore progenies of V34 were also isolated. Growth rates of six protoplast regenerants, ten F1 single spore isolates and ten single spore isolates of two fertile F1 progenies (F2) were studied by measuring their colony diameters and biomass gain after 4 days incubation. F1 single spore isolates were cultivated in compost to examine their fruiting abilities. Results showed that great variations existed among V34 progenies, in the aspects of colony morphology, growth rate and fhiiting ability. Protoplast regenerants also showed differences in colony morphology and growth rate. Two out of ten F1 isolates could fruit in straw based compost and produced the F2 progenies. Individuals with different morphologies and growth rates were examined by two arbitrary primers, M13sq and M13rs. However, none of the primers used in this study revealed any polymorphism among six randomly choosen protoplast regenerants and their parental strain V34. As for F1 progenies, both M13sq and M13rs yielded highly similiar DNA profiles with those ofthe strain V34. The results from this study confirmed the persistence of phenotypic variations in V. volvacea. Several possible mechanisms to induce these variations are discussed. Mitochondrial genome may play an important role. Acknowledgments I would like to express my sincere gratitude to my supervisors: Dr. Siu-Wai Chiu and Prof. Shu-Ting Chang, who not only gave me the opportunity to study in the establishment of mushroom Volvariella volvacea, but also have been leading me and offering me countless ideas, advices and encouragement. I would also like to thank Dr. J. A. Buswell and Dr. H. S. Kwan for acting as members of my Thesis Committee. Thanks for their patience, advices and criticism. Moreover, I would like to send my thanks to my external examiner, although I do not know yet who he is. My appreciation also extends to Mr. S. N. Mok for teaching me cultivate mushrooms, to technicians in Biology Department for technical assistance and to Ms. M. Y. Yu, Mr. H. X. Wang, Mr Y. J. Cai,Ms S. J. Chapman and all the other classmates for their helping me overcome many difficulties. Finally but not means the least, I wish to thank my family, for the support, encouragement and endless love they always give me. Content Page List ofTables I List ofIllustrations 11 List of Abbreviations HI Chapter 1 Introduction 1 1.1 Fungal life cycles 1 1.1.1 Heterothallism 1 1.1.1.1 Bipolar incompatibility 2 1.1.1.2 Tetrapolar incompatibility 2 1.1.2 Homothallism 2 1.1.2.1 Primary homothallism 2 1.1.2.2 Secondary homothallism 3 1.2 Biology ofhomothallic Volvariella volvacea 3 1.3 Genetic mechanisms generating variations in fungi 8 1.3.1 Meiotic recombination 8 1.3.2 Mitotic recombination 9 1.3.3 Fungal mitochondrial genomes 11 1.3.3.1 Structure of fungal mitochondrial genome 11 1.3.3.2 Mitochondrial plasmids 14 1.3.3.3 Mitochondrial inheritance 14 1.3.3.4 Mitochondrial polymorphisms 15 1.3.4 Transposons 16 1.4 Genetic studies of mushrooms by molecular and protoplast tools 17 1.4.1 Genetic markers 17 1.4.1.1 Restriction fragement length polymorphisms (RFLPs) 18 1.4.1.2 Polymerase chain reaction (PCR) 18 1.4.1.2.1 Arbitrarilyprimed PCR (AP-PCR) 20 1.4.2 Protoplasts 23 1.4.2.1 Protoplast isolation - 23 1.4.2.2 Mycolytic enzymes 24 1.4.2.3 Osmotic stabilizers 26 1.4.2.4 Physiological condition ofmycelium 27 1.4.2.5 Protoplast regeneration 28 1.4.2.6 Application ofprotoplasts 28 1.5 Purpose and significance ofthis genetic study on V. volvacea 29 Chapter 2 Materials and Methods 30 2.1 Organism 30 2.2 Cell cultivation and maintenance 30 2.3 Solutions and chemicals 30 2.3.1 Solutions for DNA isolation 30 2.3.2 Solutions for agarose gel electrophoresis 31 2.3.3 PCR primers and reagents 31 2.4 DNA extraction and purification 31 2.5 Agarose gel electrophoresis 32 2.6 Arbitrarily primed polymerase chain reaction (AP-PCR) 33 2.7 Protoplast isolation and regeneration 34 2.7.1 Preparation ofprotoplasts 34 2.7.2 Regeneration of protoplasts 34 2.8 Single spore isolation and germination 35 2.9 Growth rate measurement 36 2.9.1 Colony diameter measurement 36 2.9.2 Biomass gain measurement 37 Chapter 3 Results 38 3.1 Genomic DNA extraction - 38 3.2 Genetic analyses of V34 and its progenies 3 8 3.2.1 Protoplast regenerants ^ 8 3.2.1.1 Protoplast preparation 3 8 3.2.1.2 Protoplast regeneration 42 3.2.1.3 Morphology of V34 protoplast regenerants 42 3.2.1.4 Growth rate measurement 44 3.2.1.5 AP-PCR analysis ofV34 protoplast regenerants 44 3.2.2 V34 single spore isolates (SSIs) - F1 progenies 48 3.2.2.1 Single spore isolation and germination 48 3.2.2.2 Morphology ofFl progenies 48 3.2.2.3 Growth rate measurement 48 3.2.2.4 AP-PCR analysis of 10 V34 single spore isolates 51 3.2.2.5 Fruiting ability of F1 progenies 51 3.2.3 Single spore isolates from F1 progenies-F2 progenies 54 3.2.3.1 Colony morphology and growth rate 54 Chapter 4 Discussion ^^ 4.1 Protoplast isolation and regeneration 59 4.2 Phenotypic variations in Volvariella volvacea 61 4.2.1 Colony morphology 61 ^~— I •ii^^^M—^^^—I^M^—^M^I^M^MMMMTmMITMffMlllHIII^III i|l|iHIWIillll|i|ii IWH|ll_WHiUMU'mimi_I 4.2.2 Growth rate 61 4.2.3 Fruiting ability 62 4.3 Genetic mechanisms for phenotypic variations in V. volvacea 63 4.4 AP-PCR analyses 65 4.5 Possible sources ofvariations 66 4.5.1 Mitochondrial DNA (mtDNA) 67 4.5.2 Spontaneous mutations - 67 Conclusion 69 References 70 List ofIllustrations Fig. 1 Haploid life cycle of Volvariella volvacea (Chiu, 1993). 7 Fig. 2 Meiotic crossing-over in fungi (modified from Bos & Swart, 1995). 10 Fig. 3 Recombination during mitosis in fungi (modified from Bos & Swart,1995). 12 Fig. 4 A typical scan spectrum ofgenomic DNA sample from Volvariella volvacea strain V34 and its progenies. 39 Fig. 5 Agarose gel showing the genomic DNAs from Volvariella volvacea isolates. 40 Fig. 6 Protoplast yield from different ages ofmycelia and different times of exposure to lytic enzymes. 41 Fig. 7 Colony morphologies of V34 protoplast regenerants. 43 Fig. 8 The biomass gain by six V34 protoplast regenerants after 4-day incubation. 45 Fig. 9 AP-PCR profiles of six protoplast regenerants of V. volvacea V34 using primer M13sq. 46 Fig. 10 AP-PCR profiles of six protoplast regenerants of V. volvacea V34 using primer M13rs. 47 Fig. 11 Colony morphologies of V34 single spore isolates (F1). 49 Fig. 12 The biomass gain by ten V34 single spore isolates (F1) after 4-day incubation. 50 Fig. 13 AP-PCR profiles of 10 single spore isolates ofV34 using primer M13sq. 52 Fig. 14 AP-PCR profiles of 10 single spore isolates of V34 using primer M13rs. 53 Fig. 15 Colony morphologies of single spore isolates ofNo.33 (the F2 progeny). 55 Fig. 16 Colony morphologies of single spore isolates ofNo. 10 (the F2 progeny). 56 Fig. 17 The biomass gain by ten single spore isolates of No. 10 isolate after 4-day incubation. 57 Fig. 18 The biomass gain by ten single spore isolates ofNo. 33 isolate after 4-day incubation. 58 List of Tables Table 1 Nomenclature for mitochondrial genes (Hudespeth, 1992). 13 Table 2 Properties of RFLPs and RAPDs/AP-PCR (modified from Rafalski & Tingey,1993). 22 Table 3 Protoplast isolation system in some edible mushrooms (sources: Selitrennikoff& Bloomfield, 1984; Kitamoto et al., 1988; Peberdy, 1991). 25 Table 4. The regeneration frequency of protoplasts 42 Table 5. The colony diameters ofprotoplast regenerants (4 day cultures) 42 Table 6. Germination frequency of V34 spores 48 Table 7. The colony diameters of single spore isolates (SSIs) (4 day cultures) 48 Table 8. Fruiting test of F1 progeny 51 Table 9. The colony diameters of single spore isolates of No.lO F1 progeny (4 day cultures) 54 Table 10. The colony diameters ofsingle spore isolates of No.33 F1 progeny (4 day cultures) 54 List of Abbreviations AP-PCR: Arbitrarily primed polymerase chain reaction bp: base pair CM: Complete medium dNTPs: deoxyribonucleotide triphosphates EDTA: Ethylenediaminetetra-acetic acid Kb: Kilobase pairs Mb: Megabase pairs MCM: Mannitol complete medium MI: First meiotic division MtDNA: Mitochondrial DNA PCR: Polymerase chain reaction PD: Potato dextrose broth PDA: Potato dextrose agar RAPDs: Random amplified polymorphic DNAs RFLPs: Restriction fragement length polymorphisms SDS: Sodium dodecyl sulfate SSI: Single spore isolate Tris: Tris (hydroxymethyl) aminomethane Chapter 1.