O-Glcnac Modification of Tau Directly Inhibits Its Aggregation Without Perturbing the Conformational Properties of Tau Monomers
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Glycation Marker Glucosepane Increases with the Progression Of
Legrand et al. Arthritis Research & Therapy (2018) 20:131 https://doi.org/10.1186/s13075-018-1636-6 RESEARCHARTICLE Open Access Glycation marker glucosepane increases with the progression of osteoarthritis and correlates with morphological and functional changes of cartilage in vivo Catherine Legrand1†, Usman Ahmed2,3†, Attia Anwar2, Kashif Rajpoot4, Sabah Pasha2, Cécile Lambert1, Rose K. Davidson5, Ian M. Clark5, Paul J. Thornalley2,3, Yves Henrotin1,6 and Naila Rabbani2,3* Abstract Background: Changes of serum concentrations of glycated, oxidized, and nitrated amino acids and hydroxyproline and anticyclic citrullinated peptide antibody status combined by machine learning techniques in algorithms have recently been found to provide improved diagnosis and typing of early-stage arthritis of the knee, including osteoarthritis (OA), in patients. The association of glycated, oxidized, and nitrated amino acids released from the joint with development and progression of knee OA is unknown. We studied this in an OA animal model as well as interleukin-1β-activated human chondrocytes in vitro and translated key findings to patients with OA. Methods: Sixty male 3-week-old Dunkin-Hartley guinea pigs werestudied.Separategroupsof12animalswerekilledat age 4, 12, 20, 28 and 36 weeks, and histological severity of knee OA was evaluated, and cartilage rheological properties were assessed. Human chondrocytes cultured in multilayers were treated for 10 days with interleukin-1β. Human patients with early and advanced OA and healthy controls were recruited, blood samples were collected, and serum or plasma was prepared. Serum, plasma, and culture medium were analyzed for glycated, oxidized, and nitrated amino acids. Results: Severity of OA increased progressively in guinea pigs with age. -
Amino Acid Building Block Models – in Brief
Amino Acid Building Block Models – In Brief Key Teaching Points for Amino Acid Building Block Models© Overall Student Learning Objective: What Dictates How a Protein Folds? Amino acids are the building blocks of proteins. All amino acids have an identical core structure consisting of an alpha-carbon, carboxyl group, amino group and R-group (sidechain). A linear chain of amino acids is a polypeptide. The primary sequence of a protein is the linear sequence of amino acids in a polypeptide. Proteins are made up of amino acid monomers linked together by peptide bonds. Peptide bond formation between amino acids results in the release of water (dehydration synthesis or condensation reaction). The protein backbone is characterized by the “N-C-C-N-C-C. .” pattern. The “ends” of the protein can be identified by the N-terminus (amino group) end and the C-terminus (carboxyl group) end. For a more complete lesson guide, please visit: http://www.3dmoleculardesigns.com/3DMD-Files/AABB/ContentsandAssembly.pdf Amino Acid Core Structure Build an amino acid according to the diagram to the right: 1. Identify the alpha carbon, amino group, carboxyl group and R-group (sidechain representation) in the structure you have constructed. Two amino acids can be chemically linked by a reaction called “condensation” or “dehydration synthesis” to form a dipeptide bond linking the two amino acids. A chain of amino acid units (monomers) linked together by peptide bonds is called a polypeptide. General Dipeptide Structure Construct a model of a dipeptide using the amino acid models previously built. 2. What are the products of the condensation reaction (dehydration synthesis)? 3. -
Protein Carbamylation Is a Hallmark of Aging SEE COMMENTARY
Protein carbamylation is a hallmark of aging SEE COMMENTARY Laëtitia Gorissea,b, Christine Pietrementa,c, Vincent Vuibleta,d,e, Christian E. H. Schmelzerf, Martin Köhlerf, Laurent Ducaa, Laurent Debellea, Paul Fornèsg, Stéphane Jaissona,b,h, and Philippe Gillerya,b,h,1 aUniversity of Reims Champagne-Ardenne, Extracellular Matrix and Cell Dynamics Unit CNRS UMR 7369, Reims 51100, France; bFaculty of Medicine, Laboratory of Medical Biochemistry and Molecular Biology, Reims 51100, France; cDepartment of Pediatrics (Nephrology Unit), American Memorial Hospital, University Hospital, Reims 51100, France; dDepartment of Nephrology and Transplantation, University Hospital, Reims 51100, France; eLaboratory of Biopathology, University Hospital, Reims 51100, France; fInstitute of Pharmacy, Faculty of Natural Sciences I, Martin Luther University Halle-Wittenberg, Halle 24819, Germany; gDepartment of Pathology (Forensic Institute), University Hospital, Reims 51100, France; and hLaboratory of Pediatric Biology and Research, Maison Blanche Hospital, University Hospital, Reims 51100, France Edited by Bruce S. McEwen, The Rockefeller University, New York, NY, and approved November 23, 2015 (received for review August 31, 2015) Aging is a progressive process determined by genetic and acquired cartilage, arterial wall, or brain, and shown to be correlated to the factors. Among the latter are the chemical reactions referred to as risk of adverse aging-related outcomes (5–10). Because AGE nonenzymatic posttranslational modifications (NEPTMs), such as formation -
Elucidating Crosstalk Mechanisms Between Phosphorylation and O
Elucidating crosstalk mechanisms between PNAS PLUS phosphorylation and O-GlcNAcylation Aneika C. Leneya,b,c,d, Dris El Atmiouie, Wei Wua,b,c,d, Huib Ovaae, and Albert J. R. Hecka,b,c,d,1 aBiomolecular Mass Spectrometry and Proteomics, Utrecht University, 3584 CH Utrecht, The Netherlands; bBijvoet Center for Biomolecular Research, Utrecht University, 3584 CH Utrecht, The Netherlands; cUtrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, The Netherlands; dNetherlands Proteomics Centre, Utrecht University, 3584 CH Utrecht, The Netherlands; and eChemical Immunology, Leiden University Medical Centre, 2333 ZA Leiden, The Netherlands Edited by Tony Hunter, The Salk Institute for Biological Studies, La Jolla, CA, and approved July 21, 2017 (received for review December 14, 2016) Proteins can be modified by multiple posttranslational modifications from studies in which cellular stimuli were shown to increase both (PTMs), creating a PTM code that controls the function of proteins in O-GlcNAcylation and phosphorylation levels simultaneously (6, 7). space and time. Unraveling this complex PTM code is one of the great Although, many studies have demonstrated that crosstalk occurs, challenges in molecular biology. Here, using mass spectrometry-based studies that identify and colocalize both the phosphorylation and assays, we focus on the most common PTMs—phosphorylation and O-GlcNAcylation sites simultaneously on the same protein/peptide O-GlcNAcylation—and investigate how they affect each other. We are sporadic. Thus, doubt still exists as to whether on a specific demonstrate two generic crosstalk mechanisms. First, we define a protein molecule O-GlcNAcylation directly affects phosphorylation frequently occurring, very specific and stringent phosphorylation/ or vice versa. -
NIH Public Access Author Manuscript J Neuropathol Exp Neurol
NIH Public Access Author Manuscript J Neuropathol Exp Neurol. Author manuscript; available in PMC 2010 September 24. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: J Neuropathol Exp Neurol. 2009 July ; 68(7): 709±735. doi:10.1097/NEN.0b013e3181a9d503. Chronic Traumatic Encephalopathy in Athletes: Progressive Tauopathy following Repetitive Head Injury Ann C. McKee, MD1,2,3,4, Robert C. Cantu, MD3,5,6,7, Christopher J. Nowinski, AB3,5, E. Tessa Hedley-Whyte, MD8, Brandon E. Gavett, PhD1, Andrew E. Budson, MD1,4, Veronica E. Santini, MD1, Hyo-Soon Lee, MD1, Caroline A. Kubilus1,3, and Robert A. Stern, PhD1,3 1 Department of Neurology, Boston University School of Medicine, Boston, Massachusetts 2 Department of Pathology, Boston University School of Medicine, Boston, Massachusetts 3 Center for the Study of Traumatic Encephalopathy, Boston University School of Medicine, Boston, Massachusetts 4 Geriatric Research Education Clinical Center, Bedford Veterans Administration Medical Center, Bedford, Massachusetts 5 Sports Legacy Institute, Waltham, MA 6 Department of Neurosurgery, Boston University School of Medicine, Boston, Massachusetts 7 Department of Neurosurgery, Emerson Hospital, Concord, MA 8 CS Kubik Laboratory for Neuropathology, Department of Pathology, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts Abstract Since the 1920s, it has been known that the repetitive brain trauma associated with boxing may produce a progressive neurological deterioration, originally termed “dementia pugilistica” and more recently, chronic traumatic encephalopathy (CTE). We review the 47 cases of neuropathologically verified CTE recorded in the literature and document the detailed findings of CTE in 3 professional athletes: one football player and 2 boxers. -
Introduction to Proteins and Amino Acids Introduction
Introduction to Proteins and Amino Acids Introduction • Twenty percent of the human body is made up of proteins. Proteins are the large, complex molecules that are critical for normal functioning of cells. • They are essential for the structure, function, and regulation of the body’s tissues and organs. • Proteins are made up of smaller units called amino acids, which are building blocks of proteins. They are attached to one another by peptide bonds forming a long chain of proteins. Amino acid structure and its classification • An amino acid contains both a carboxylic group and an amino group. Amino acids that have an amino group bonded directly to the alpha-carbon are referred to as alpha amino acids. • Every alpha amino acid has a carbon atom, called an alpha carbon, Cα ; bonded to a carboxylic acid, –COOH group; an amino, –NH2 group; a hydrogen atom; and an R group that is unique for every amino acid. Classification of amino acids • There are 20 amino acids. Based on the nature of their ‘R’ group, they are classified based on their polarity as: Classification based on essentiality: Essential amino acids are the amino acids which you need through your diet because your body cannot make them. Whereas non essential amino acids are the amino acids which are not an essential part of your diet because they can be synthesized by your body. Essential Non essential Histidine Alanine Isoleucine Arginine Leucine Aspargine Methionine Aspartate Phenyl alanine Cystine Threonine Glutamic acid Tryptophan Glycine Valine Ornithine Proline Serine Tyrosine Peptide bonds • Amino acids are linked together by ‘amide groups’ called peptide bonds. -
Aluminum Neurotoxicity — Potential Role in the Pathogenesis of Neurofibrillary Tangle Formation Daniel P
LE JOURNAL CANADIEN DES SCIENCES NEUROLOGIQUES Aluminum Neurotoxicity — Potential Role in the Pathogenesis of Neurofibrillary Tangle Formation Daniel P. Perl and William W. Pendlebury ABSTRACT: Alzheimer's disease is a progressive neurodegenerative disease characterized neuropathologically by the development of large numbers of neurofibrillary tangles in certain neuronal populations of affected brains. This paper presents a review of the available evidence which suggests that aluminum is associated with Alzheimer's disease and specifically with the development of the neurofibrillary tangle. Aluminum salts innoculated into experi mental animals produce neurofilamentous lesions which are similar, though not identical, to the neurofibrillary tangle of man. Although a few reports have suggested evidence of increased amounts of aluminum in the brains of Alzheimer's disease victims, such bulk analysis studies have been difficult to replicate. Using scanning electron microscopy with x-ray spectrometry, we have identified accumulations of aluminum in neurofibrillary tangle-bearing neurons of Alzheimer's disease. Similar accumulations have been identified in the neurofibrillary tangle-bearing neurons found in the brains of indigenous natives of Guam who suffer from parkinsonism with dementia and amyotrophic lateral sclerosis. This ongoing research still cannot ascribe a causal role of aluminum in the pathogenesis of neurofibrillary tangle formation; however, it does suggest that environmental factors may play an important part in the formation of this abnormality. RESUME: La neurotoxicity de Paluminium: son role possible dans la pathogenese de la formation des enchevetrements neurofibrillaires. La maladie d'Alzheimer est une maladie neurodegenerative progressive caracterisee au point de vue anatomo-pathologique par le developpement d'un grand nombre d'enchevetrements neurofibrillaires au sein de certaines populations de neurones dans le cerveau des sujets atteints. -
Introduction 1.1 Post-Translational Modifications
Chapter I: Introduction 1.1 Post-translational modifications Post-translational modifications (PTMs) are responsible for dynamic regulation of protein structure and function (Jensen et al., 2006). One example of the function of post-translational modifications in the dynamic regulation of protein structure and function is signal transduction; post-translational modification of key regulatory proteins in signal transduction pathways controls cellular proliferation, metabolism, gene expression, cytoskeletal organization and apoptosis (Jensen et al., 2006). Post-translational modifications not only change the mass of the protein, they are also often responsible for changes in charge, structure and conformation. This leads to changes in the biological activity of proteins like enzymes, the binding affinity of proteins to receptors and other protein-protein interactions (Hoffmann et al., 2008) (Murray et al., 1998). For example, the interaction of the cytokine TGF-beta with its receptor complex results in the phosphorylation of SMAD family proteins which activates these proteins to regulate target gene expression (Massague et al., 2000). Post-translational modified amino acid residues can act as binding sites on proteins for a specific recognition domain on other proteins. For example, phosphorylated tyrosine residues can bind to SH2 or PTB domains (Pawson et al., 1997). Depending on the type of PTM they can be very abundant and have a large number of target proteins, whereas other PTM`s have only a few target proteins. Moreover, some PTM`s are connected with several different residues and not only with one residue. For example multi-site phosphorylation that primarily targets Serine, Threonine and Tyrosine residues is a crucial mechanism for the regulation of protein localization and functional activity (Cohen et al., 2000). -
Peptides & Proteins
Peptides & Proteins (thanks to Hans Börner) 1 Proteins & Peptides Proteuos: Proteus (Gr. mythological figure who could change form) proteuo: „"first, ref. the basic constituents of all living cells” peptos: „Cooked referring to digestion” Proteins essential for: Structure, metabolism & cell functions 2 Bacterium Proteins (15 weight%) 50% (without water) • Construction materials Collagen Spider silk proteins 3 Proteins Structural proteins structural role & mechanical support "cell skeleton“: complex network of protein filaments. muscle contraction results from action of large protein assemblies Myosin und Myogen. Other organic material (hair and bone) are also based on proteins. Collagen is found in all multi cellular animals, occurring in almost every tissue. • It is the most abundant vertebrate protein • approximately a quarter of mammalian protein is collagen 4 Proteins Storage Various ions, small molecules and other metabolites are stored by complexation with proteins • hemoglobin stores oxygen (free O2 in the blood would be toxic) • iron is stored by ferritin Transport Proteins are involved in the transportation of particles ranging from electrons to macromolecules. • Iron is transported by transferrin • Oxygen via hemoglobin. • Some proteins form pores in cellular membranes through which ions pass; the transport of proteins themselves across membranes also depends on other proteins. Beside: Regulation, enzymes, defense, functional properties 5 Our universal container system: Albumines 6 zones: IA, IB, IIA, IIB, IIIA, IIIB; IIB and -
Advanced Glycation End Products
ition & F tr oo u d N f S o c l i e a n n c r e u s o J Journal of Nutrition & Food Sciences Abate G, et al., J Nutr Food Sci 2015, 5:6 ISSN: 2155-9600 DOI: 10.4172/2155-9600.1000440 Review Artice Open Access Advanced Glycation End Products (AGEs) in Food: Focusing on Mediterranean Pasta Abate G1, Delbarba A2, Marziano M1, Memo M1 and Uberti D1,2* 1Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy. 2Diadem Ltd, Spin Off of Brescia University, Brescia, Italy. *Corresponding author: Uberti D, Department of Molecular and Translational Medicine, University of Brescia, 25123 Brescia, Italy, Tel: +39-0303717509; E-mail: [email protected] Rec Date: Nov 16, 2015; Acc Date: Nov 26, 2015; Pub Date: Nov 30, 2015 Copyright: © 2015 Abate G, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Abstract Advanced glycation end products, also known as glycotoxins, are a diverse group of highly oxidant compounds with pathogenic significance in aged-chronic disease, including diabetes, cardiovascular disease and neurodegenerative disease. They are produced physiologically in the body when reducing sugar binds to a free amino acid group of macromolecules. Thus conditions such as hyperglycemia and/or oxidative stress can favor AGE product formation, contributing to ageing processes and the exacerbation of pathological states. Beside endogenous AGEs, dietary AGE intake contributes significantly to the body AGE pool. -
Structure and Synthesis of Antifungal Disulfide
microorganisms Review Structure and Synthesis of Antifungal Disulfide β-Strand Proteins from Filamentous Fungi Györgyi Váradi 1,*, Gábor K. Tóth 1,2 and Gyula Batta 3 1 Department of Medical Chemistry, Faculty of Medicine, University of Szeged, H-6720 Szeged, Hungary; [email protected] 2 MTA-SZTE Biomimetic Systems Research Group, University of Szeged, H-6720 Szeged, Hungary 3 Department of Organic Chemistry, University of Debrecen, H-4032 Debrecen, Hungary; [email protected] * Correspondence: [email protected]; Tel.: +36-62-545-142; Fax: +36-62-545-971 Received: 20 November 2018; Accepted: 24 December 2018; Published: 27 December 2018 Abstract: The discovery and understanding of the mode of action of new antimicrobial agents is extremely urgent, since fungal infections cause 1.5 million deaths annually. Antifungal peptides and proteins represent a significant group of compounds that are able to kill pathogenic fungi. Based on phylogenetic analyses the ascomycetous, cysteine-rich antifungal proteins can be divided into three different groups: Penicillium chrysogenum antifungal protein (PAF), Neosartorya fischeri antifungal protein 2 (NFAP2) and “bubble-proteins” (BP) produced, for example, by P. brevicompactum. They all dominantly have β-strand secondary structures that are stabilized by several disulfide bonds. The PAF group (AFP antifungal protein from Aspergillus giganteus, PAF and PAFB from P. chrysogenum, Neosartorya fischeri antifungal protein (NFAP)) is the best characterized with their common β-barrel tertiary structure. These proteins and variants can efficiently be obtained either from fungi production or by recombinant expression. However, chemical synthesis may be a complementary aid for preparing unusual modifications, e.g., the incorporation of non-coded amino acids, fluorophores, or even unnatural disulfide bonds. -
Chronic Traumatic Encephalopathy-Like Abnormalities in a Routine Neuropathology Service
J Neuropathol Exp Neurol Vol. 75, No. 12, December 2016, pp. 1145–1154 doi: 10.1093/jnen/nlw092 ORIGINAL ARTICLE Chronic Traumatic Encephalopathy-Like Abnormalities in a Routine Neuropathology Service Shawna Noy, MD, Sherry Krawitz, MD, PhD, and Marc R. Del Bigio, MD, PhD, FRCPC Downloaded from https://academic.oup.com/jnen/article-abstract/75/12/1145/2452334 by guest on 07 September 2018 sports including boxing, American football, soccer, ice Abstract hockey, wrestling and rugby, as well as in military personnel Chronic traumatic encephalopathy (CTE) has been described who have had exposure to blast or concussive injury (3–6). mainly in professional athletes and military personnel and is charac- McKeeetal(1) categorized the histological findings of CTE terized by deposition of hyperphosphorylated tau at the depths of into 4 stages. Their evidence suggests that CTE begins at the cortical sulci and around blood vessels. To assess CTE-like changes depths of cortical sulci in a perivascular distribution, and in a routine neuropathology service, we prospectively examined 111 spreads to involve widespread regions of the central nervous brains (age 18–60 years). The presence of tau-immunoreactive de- system. The pathogenesis of CTE is not well understood. posits was staged using guidelines described by others and was cor- Repetitive mild brain trauma is the postulated underlying related with the medical history. 72/111 cases were negative for stimulus (3). Tau (which is encoded by the MAPT gene) is an CTE-like changes; 34/111 were CTE stage <1; 3/111 were CTE axonal protein that promotes microtubule assembly and stabil- stage 1; and 2/111 were CTE stage 2.