Toxin Synergism in Snake Venoms
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KEGG Orthology-Based Annotation of the Predicted
Dunlap et al. BMC Genomics 2013, 14:509 http://www.biomedcentral.com/1471-2164/14/509 DATABASE Open Access KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome Walter C Dunlap1,2, Antonio Starcevic4, Damir Baranasic4, Janko Diminic4, Jurica Zucko4, Ranko Gacesa4, Madeleine JH van Oppen1, Daslav Hranueli4, John Cullum5 and Paul F Long2,3* Abstract Background: Contemporary coral reef research has firmly established that a genomic approach is urgently needed to better understand the effects of anthropogenic environmental stress and global climate change on coral holobiont interactions. Here we present KEGG orthology-based annotation of the complete genome sequence of the scleractinian coral Acropora digitifera and provide the first comprehensive view of the genome of a reef-building coral by applying advanced bioinformatics. Description: Sequences from the KEGG database of protein function were used to construct hidden Markov models. These models were used to search the predicted proteome of A. digitifera to establish complete genomic annotation. The annotated dataset is published in ZoophyteBase, an open access format with different options for searching the data. A particularly useful feature is the ability to use a Google-like search engine that links query words to protein attributes. We present features of the annotation that underpin the molecular structure of key processes of coral physiology that include (1) regulatory proteins of -
Comparative Studies of the Venom of a New Taipan Species, Oxyuranus Temporalis, with Other Members of Its Genus
Toxins 2014, 6, 1979-1995; doi:10.3390/toxins6071979 OPEN ACCESS toxins ISSN 2072-6651 www.mdpi.com/journal/toxins Article Comparative Studies of the Venom of a New Taipan Species, Oxyuranus temporalis, with Other Members of Its Genus Carmel M. Barber 1, Frank Madaras 2, Richard K. Turnbull 3, Terry Morley 4, Nathan Dunstan 5, Luke Allen 5, Tim Kuchel 3, Peter Mirtschin 2 and Wayne C. Hodgson 1,* 1 Monash Venom Group, Department of Pharmacology, Faculty of Medicine, Nursing and Health Sciences, Monash University, Clayton, Victoria 3168, Australia; E-Mail: [email protected] 2 Venom Science Pty Ltd, Tanunda, South Australia 5352, Australia; E-Mails: [email protected] (F.M.); [email protected] (P.M.) 3 SA Pathology, IMVS Veterinary Services, Gilles Plains, South Australia 5086, Australia; E-Mails: [email protected] (R.K.T.); [email protected] (T.K.) 4 Adelaide Zoo, Adelaide, South Australia 5000, Australia; E-Mail: [email protected] 5 Venom Supplies, Tanunda, South Australia, South Australia 5352, Australia; E-Mails: [email protected] (N.D.); [email protected] (L.A.) * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +61-3-9905-4861; Fax: +61-3-9905-2547. Received: 5 May 2014; in revised form: 11 June 2014 / Accepted: 16 June 2014 / Published: 2 July 2014 Abstract: Taipans are highly venomous Australo-Papuan elapids. A new species of taipan, the Western Desert Taipan (Oxyuranus temporalis), has been discovered with two specimens housed in captivity at the Adelaide Zoo. This study is the first investigation of O. -
Biochemical Characterization of Phospholipase A2 (Trimorphin) from the Venom of the Sonoran Lyre Snake Trimorphodon Biscutatus Lambda (Family Colubridae)
Toxicon 44 (2004) 27–36 www.elsevier.com/locate/toxicon Biochemical characterization of phospholipase A2 (trimorphin) from the venom of the Sonoran Lyre Snake Trimorphodon biscutatus lambda (family Colubridae) Ping Huang, Stephen P. Mackessy* Department of Biological Sciences, University of Northern Colorado, 501 20th St., CB 92, Greeley, CO 80639-0017, USA Received 3 December 2003; accepted 23 March 2004 Available online 18 May 2004 Abstract Phospholipases A2 (PLA2), common venom components and bioregulatory enzymes, have been isolated and sequenced from many snake venoms, but never from the venom (Duvernoy’s gland secretion) of colubrid snakes. We report for the first time the purification, biochemical characterization and partial sequence of a PLA2 (trimorphin) from the venom of a colubrid snake, Trimorphodon biscutatus lambda (Sonoran Lyre Snake). Specific phospholipase activity of the purified PLA2 was confirmed by enzyme assays. The molecular weight of the enzyme has been determined by SDS-PAGE and mass spectrometry to be 13,996 kDa. The sequence of 50 amino acid residues from the N-terminal has been identified and shows a high degree of sequence homology to the type IA PLA2s, especially the Asp-49 enzymes. The Cys-11 residue, characteristic of the group IA 2þ PLA2s, and the Ca binding loop residues (Tyr-28, Gly-30, Gly-32, and Asp-49) are conserved. In addition, the His-48 residue, a key component of the active site, is also conserved in trimorphin. The results of phylogenetic analysis on the basis of amino acid sequence homology demonstrate that trimorphin belongs to the type IA family, and it appears to share a close evolutionary relationship with the PLA2s from hydrophiine elapid snakes (sea snakes and Australian venomous snakes). -
Structure±Function Properties of Venom Components from Australian Elapids
PERGAMON Toxicon 37 (1999) 11±32 Review Structure±function properties of venom components from Australian elapids Bryan Grieg Fry * Peptide Laboratory, Centre for Drug Design and Development, University of Queensland, St. Lucia, Qld, 4072, Australia Received 9 December 1997; accepted 4 March 1998 Abstract A comprehensive review of venom components isolated thus far from Australian elapids. Illustrated is that a tremendous structural homology exists among the components but this homology is not representative of the functional diversity. Further, the review illuminates the overlooked species and areas of research. # 1998 Elsevier Science Ltd. All rights reserved. 1. Introduction Australian elapids are well known to be the most toxic in the world, with all of the top ten and nineteen of the top 25 elapids with known LD50s residing exclusively on this continent (Broad et al., 1979). Thus far, three main types of venom components have been characterised from Australian elapids: prothrombin activating enzymes; lipases with a myriad of potent activities; and powerful peptidic neurotoxins. Many species have the prothrombin activating enzymes in their venoms, the vast majority contain phospholipase A2s and all Australian elapid venoms are suspected to contain peptidic neurotoxins. In addition to the profound neurological eects such as disorientation, ¯accid paralysis and respiratory failure, characteristic of bites by many species of Australian elapids is hemorrhaging and incoagulable blood. As a result, these elapids can be divided into two main classes: species with procoagulant venom (Table 1) and species with non-procoagulant venoms (Table 2) (Tan and * Author to whom correspondence should be addressed. 0041-0101/98/$ - see front matter # 1998 Elsevier Science Ltd. -
Composition Modulating Botulinum Neurotoxin Effect
(19) *EP003753568A1* (11) EP 3 753 568 A1 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: (51) Int Cl.: 23.12.2020 Bulletin 2020/52 A61K 38/17 (2006.01) A61K 31/205 (2006.01) A61K 31/4178 (2006.01) A61K 38/48 (2006.01) (2006.01) (2006.01) (21) Application number: 19181635.4 A61P 9/00 A61P 21/00 A61P 29/00 (2006.01) (22) Date of filing: 21.06.2019 (84) Designated Contracting States: •Cros, Cécile AL AT BE BG CH CY CZ DE DK EE ES FI FR GB 74580 Viry (FR) GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO • Hulo, Nicolas PL PT RO RS SE SI SK SM TR 1252 Meinier (CH) Designated Extension States: • Machicoane, Mickaël BA ME 1290 Versoix (CH) Designated Validation States: KH MA MD TN (74) Representative: Barbot, Willy Simodoro-ip (71) Applicant: Fastox Pharma SA 82, rue Sylvabelle 1003 Lausanne (CH) 13006 Marseille (FR) (72) Inventors: • Le Doussal, Jean-Marc 1007 Lausanne (CH) (54) COMPOSITION MODULATING BOTULINUM NEUROTOXIN EFFECT (57) The present invention relates to a method for cholinergic neuronal transmission to the botulinum neu- modulating the effect of a botulinum neurotoxin compo- rotoxin composition. The invention also relates to com- sition, that is accelerating the onset of action and /or ex- positions comprising at least one postsynaptic inhibitor tending the duration of action and/or enhancing the in- of cholinergic neuronal transmission and a botulinum tensity of action of a botulinum neurotoxin composition, neurotoxin, and their uses for treating aesthetic or ther- comprising adding at least one postsynaptic inhibitor of apeutic conditions. -
The Role of Ion Channels in Neurodegeneration
The Role of Ion Channels in Neurodegeneration Phyllis Dan, Ph.D. Neurodegenerative diseases take an enormous toll on society as well as on individuals. Very limited treatments for these diseases exist, since their molecular mechanisms are not well understood. Several ion channels, a group of membrane spanning proteins that regulate ion content and membrane potential in cells, have been implicated as important 2+ players in these diseases. While many Ca conducting channels (CaV, P2X or glutamate receptors) may contribute to glutamate overload and excitotoxicity directly, K+ channels often regulate the membrane potential controlling the Ca2+ signal indirectly. Below, we review the use of Alomone Labs' products in research related to the role ion channels play in these diseases. Sodium, potassium, and calcium channels, as well receptors from the basal forebrain cholinergic the these currents in a drosophila model, specific 7 as the glutamate receptors NMDA and AMPA have neurons (BCFN) , whose numbers are shown to blocker of the Kv4.2 channel, Phrixotoxin-2 all been implicated in various neurodegenerative decrease early in the disease process. In addition, (#P-700) and specific blocker of the Shaker diseases. One of the main factors in neurotoxicity potassium channels, specifically Kv3.1 and Kv2.1 channel α-Dendrotoxin (#D-350) were used. is glutamate overload.1 Glutamate is the primary have been implicated. Immunohistochemical Treatment of cells with amyloid peptide altererd excitory neurotransmittor of the nervous system. techniques, using Anti-Kv3.1 antibody (#APC-014) the kinetics of the current and caused a decrease 9 Following glutamate release, postsynaptic and Anti-Kv2.1 antibody (#APC-012) were used in neuronal viability. -
Pseudechetoxin: a Peptide Blocker of Cyclic Nucleotide-Gated Ion Channels
Proc. Natl. Acad. Sci. USA Vol. 96, pp. 754–759, January 1999 Neurobiology Pseudechetoxin: A peptide blocker of cyclic nucleotide-gated ion channels (Pseudechis australis, Australian king brown snakeypeptide toxinsysnake venomypatch-clamp techniqueypeptide sequencing) R. LANE BROWN*†,TAMMIE L. HALEY*, KAREN A. WEST‡, AND JOHN W. CRABB‡ *Neurological Sciences Institute, Oregon Health Sciences University, 1120 NW 20th Avenue, Portland, OR 97209; and ‡Eye Institute, Department of Ophthalmic Research, Cleveland Clinic Foundation, 9500 Euclid Avenue, Cleveland, OH 44195 Edited by Denis Baylor, Stanford University School of Medicine, Stanford, CA, and approved November 20, 1998 (received for review October 21, 1998) ABSTRACT Ion channels activated by the binding of CNG channel proteins are tetramers containing a- and cyclic nucleotides first were discovered in retinal rods where b-subunits (9–15). Each subunit contains an amino-terminal they generate the cell’s response to light. In other systems, transmembrane domain and pore region (16) followed by a however, it has been difficult to unambiguously determine single cyclic nucleotide-binding domain near the carboxyl whether cyclic nucleotide-dependent processes are mediated terminus (17). The cooperative binding of four cyclic nucleo- by protein kinases, their classical effector enzymes, or cyclic tide molecules activates a nonspecific cation conductance (18). Although expression of the a-subunits alone generates cyclic nucleotide-gated (CNG) ion channels. Part of this difficulty b has been caused by the lack of specific pharmacological tools. nucleotide-dependent currents, coexpression of the -subunits Here we report the purification from the venom of the creates channels that more faithfully reproduce the properties Australian King Brown snake of a peptide toxin that inhibits of the native channel (13, 14). -
Snake Venoms and Envenomations
SNAKE VENOMS AND ENVENOMATIONS Jean-Philippe Chippaux Translation by F. W. Huchzermeyer KRIEGER PUBLISHING COMPANY Malabar, Florida 2006 Original French Edition Venins des"pent et enuenimations 2002 Translated from the original French by F. W. Huchzermeyer Copyright © English Edition 2006 by IRD Editions. France Original English Edition 2006 Printed and Published by KRIEGER PUBLISHING COMPANY KRIEGER DRIVE MAlABAR. FLORIDA 32950 Allrights reserved. No part of this book may be reproduced in any form or by any means. electronic or mechanical. including information storate and retrieval systems without permission in writing from the publisher. No liabilityisassumed with respect to the useofthe inftrmation contained herein. Printed in the United States of America. Library of Congress Cataloging-in-Publication Data FROM A DECLARATION OF PRINCIPLES JOINTLY ADOPTED BY A COMMITTEE OF THE AMERICAN BAR ASSOCIATION AND A COMMITTEE OF PUBLISHERS: This publication is designed to provide accurqate and authoritative information in regard to the subject matter covered. It is sold with the understanding that the publisher is not engaged in rendering legal, accounting. or other professional service. If legal advice or other expert assistance is required. the services of a competent professional person should be sought. Chippaux, Jean-Philippe. [Venins de serpent et envenirnations, English] Snake venoms and envenomations I Jean-Philippe Chippaux ; translation by F.W. Huchzermeyer. p. cm. Includes bibliographical references and index. ISBN 1-57524-272-9 (hbk. : a1k. paper) 1. Venom. 2. Snakes. 3. Toxins. I. TIde. QP235.C4555 2006 615.9'42---<ic22 2005044486 10 9 8 7 6 5 4 3 2 Contents Glossary v Preface vii Introduction ix PART I ZOOLOGY 1. -
KEGG Orthology-Based Annotation of the Predicted
Dunlap et al. BMC Genomics 2013, 14:509 http://www.biomedcentral.com/1471-2164/14/509 DATABASE Open Access KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome Walter C Dunlap1,2, Antonio Starcevic4, Damir Baranasic4, Janko Diminic4, Jurica Zucko4, Ranko Gacesa4, Madeleine JH van Oppen1, Daslav Hranueli4, John Cullum5 and Paul F Long2,3* Abstract Background: Contemporary coral reef research has firmly established that a genomic approach is urgently needed to better understand the effects of anthropogenic environmental stress and global climate change on coral holobiont interactions. Here we present KEGG orthology-based annotation of the complete genome sequence of the scleractinian coral Acropora digitifera and provide the first comprehensive view of the genome of a reef-building coral by applying advanced bioinformatics. Description: Sequences from the KEGG database of protein function were used to construct hidden Markov models. These models were used to search the predicted proteome of A. digitifera to establish complete genomic annotation. The annotated dataset is published in ZoophyteBase, an open access format with different options for searching the data. A particularly useful feature is the ability to use a Google-like search engine that links query words to protein attributes. We present features of the annotation that underpin the molecular structure of key processes of coral physiology that include (1) regulatory proteins of -
(12) Patent Application Publication (10) Pub. No.: US 2010/0184685 A1 Zavala, JR
US 20100184685A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2010/0184685 A1 Zavala, JR. et al. (43) Pub. Date: Jul. 22, 2010 (54) SYSTEMS AND METHODS FORTREATING Publication Classification POST OPERATIVE, ACUTE, AND CHRONIC (51) Int. Cl. PAIN USING AN INTRA-MUSCULAR A638/16 (2006.01) CATHETERADMINISTRATED A6IP 29/00 (2006.01) COMBINATION OF A LOCAL ANESTHETIC A6M 25/00 (2006.01) AND ANEUROTOXIN PROTEIN (52) U.S. Cl. ........................................... 514/12: 604/523 (57) ABSTRACT (76) Inventors: Gerardo Zavala, JR., San Antonio, TX (US); Gerardo Zavala, SR. Systems, and methods for the use of Such systems, are San Antonio, TX (US) described that allow for the administration of a combination of a Sustained release local anesthetic compound (such as bupivicaine) through a catheter based administration device Correspondence Address: and direct visualization or percutaneous injection of a neuro JACKSON WALKER LLP toxic protein compound (such as botulinum toxin) for post 901 MAIN STREET, SUITE 6000 operative and refractory treated muscle pain and discomfort DALLAS, TX 75202-3797 (US) in patients having undergone spinal Surgery and other muscle splitting or treatments aimed at improving muscle pain. The (21) Appl. No.: 12/689,381 systems utilize specific catheter-based administration proto cols and methods for placement of the catheter in association with muscles Surrounding the spine and other anatomical (22) Filed: Jan. 19, 2010 sites within the patient. The utilization of an initial bolus of a specific combination of medications (local anesthetic com Related U.S. Application Data pound and\or neurotoxic protein compound) followed by a dosage pump administration through the catheter is antici (60) Provisional application No. -
Gated Calcium Currents in Turtle Auditory Hair Cells
J Physiol (2003), 549.3, pp. 697–717 DOI: 10.1113/jphysiol.2002.037481 © The Physiological Society 2003 www.jphysiol.org Biophysical and pharmacological characterization of voltage- gated calcium currents in turtle auditory hair cells M. E. Schnee and A. J. Ricci Neuroscience Center and Kresge Hearing Laboratories, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA Hair cell calcium channels regulate membrane excitability and control synaptic transmission. The present investigations focused on determining whether calcium channels vary between hair cells of different characteristic frequencies or if multiple channel types exist within a hair cell, each serving a different function. To this end, turtle auditory hair cells from high- (317 ± 27 Hz) and low- frequency (115 ± 6 Hz) positions were voltage clamped using the whole-cell recording technique, Journal of Physiology and calcium currents were characterized based on activation, inactivation and pharmacological properties. Pharmacological sensitivity to dihydropyridines (nimodipine, Bay K 8644), benzothiazepines (diltiazem) and acetonitrile derivatives (verapamil, D600) and the insensitivity to non-L-type calcium channel antagonists support the conclusion that only L-type calcium channels were present. Fast activation rise times (< 0.5 ms), hyperpolarized half-activation potentials and a relative insensitivity to nimodipine suggest the channels were of the a1D (CaV1.3) variety. Although no pharmacological differences were found between calcium currents obtained from high- and low- frequency cells, low-frequency cells activated slightly faster and at hyperpolarized potentials, with half-activating voltages of _43 ± 1mV compared to _35 ± 1mV. Inactivation was observed in both high- and low-frequency cells. The time course of inactivation required three time constants for a fit. -
(12) Patent Application Publication (10) Pub. No.: US 2011/0033378 A1 Dimasi Et Al
US 2011 0033378A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2011/0033378 A1 Dimasi et al. (43) Pub. Date: Feb. 10, 2011 (54) CYSTEINE ENGINEERED ANTIBODIES FOR Related U.S. Application Data SITE-SPECIFIC CONUGATION (60) Provisional application No. 61/022,073, filed on Jan. 18, 2008. (75) Inventors: Nazzareno Dimasi, Gaithersburg, O O MD (US); Changshou Gao Publication Classification Potomac, MD (US); Herren Wu, (51) Int. Cl. Boyds, MD (US) A6II 5L/It (2006.01) C07K 6/00 (2006.01) Correspondence Address: YK i.By 30.8 MEDIMMUNE LLC Patrick Scott Alban9 CI2N 5/10 (2006.01) CI2N 9/96 (2006.01) ONE MEDIMMUNE WAY C07K 9/00 (2006.01) GAITHERSBURG, MD 20878 (US) A 6LX 39/395 (2006.01) A6IP35/00 (2006.01) (73) Assignee: Medlmmune, LLC., Gaithersburg, A6IP37/02 (2006.01) MD (US) A6IP 29/00 (2006.01) A6IP3L/00 (2006.01) (21) Appl. No.: 12/863,322 (52) U.S. Cl. .................. 424/1.49; 530/387.3; 536/23.53; 435/320.1; 435/325; 435/188: 530/391.5; 530/391.9; 424/133.1; 424/1811; 424/179.1 (22) PCT Filed: Jan. 16, 2009 (57) ABSTRACT (86). PCT No.: PCT/USO9/31294 Cysteine engineered antibodies useful for the site-specific conjugation to a variety of agents are provided. Methods for S371 (c)(1), the design, preparation, screening, selection and use of Such (2), (4) Date: Sep. 9, 2010 antibodies are also provided. Patent Application Publication Feb. 10, 2011 Sheet 1 of 23 US 2011/0033378A1 v?eun61) Patent Application Publication Feb.