BS1950 Phytophthora Review FINAL REPORT
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Phytopythium: Molecular Phylogeny and Systematics
Persoonia 34, 2015: 25–39 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X685382 Phytopythium: molecular phylogeny and systematics A.W.A.M. de Cock1, A.M. Lodhi2, T.L. Rintoul 3, K. Bala 3, G.P. Robideau3, Z. Gloria Abad4, M.D. Coffey 5, S. Shahzad 6, C.A. Lévesque 3 Key words Abstract The genus Phytopythium (Peronosporales) has been described, but a complete circumscription has not yet been presented. In the present paper we provide molecular-based evidence that members of Pythium COI clade K as described by Lévesque & de Cock (2004) belong to Phytopythium. Maximum likelihood and Bayesian LSU phylogenetic analysis of the nuclear ribosomal DNA (LSU and SSU) and mitochondrial DNA cytochrome oxidase Oomycetes subunit 1 (COI) as well as statistical analyses of pairwise distances strongly support the status of Phytopythium as Oomycota a separate phylogenetic entity. Phytopythium is morphologically intermediate between the genera Phytophthora Peronosporales and Pythium. It is unique in having papillate, internally proliferating sporangia and cylindrical or lobate antheridia. Phytopythium The formal transfer of clade K species to Phytopythium and a comparison with morphologically similar species of Pythiales the genera Pythium and Phytophthora is presented. A new species is described, Phytopythium mirpurense. SSU Article info Received: 28 January 2014; Accepted: 27 September 2014; Published: 30 October 2014. INTRODUCTION establish which species belong to clade K and to make new taxonomic combinations for these species. To achieve this The genus Pythium as defined by Pringsheim in 1858 was goal, phylogenies based on nuclear LSU rRNA (28S), SSU divided by Lévesque & de Cock (2004) into 11 clades based rRNA (18S) and mitochondrial DNA cytochrome oxidase1 (COI) on molecular systematic analyses. -
Methods and Work Profile
REVIEW OF THE KNOWN AND POTENTIAL BIODIVERSITY IMPACTS OF PHYTOPHTHORA AND THE LIKELY IMPACT ON ECOSYSTEM SERVICES JANUARY 2011 Simon Conyers Kate Somerwill Carmel Ramwell John Hughes Ruth Laybourn Naomi Jones Food and Environment Research Agency Sand Hutton, York, YO41 1LZ 2 CONTENTS Executive Summary .......................................................................................................................... 8 1. Introduction ............................................................................................................ 13 1.1 Background ........................................................................................................................ 13 1.2 Objectives .......................................................................................................................... 15 2. Review of the potential impacts on species of higher trophic groups .................... 16 2.1 Introduction ........................................................................................................................ 16 2.2 Methods ............................................................................................................................. 16 2.3 Results ............................................................................................................................... 17 2.4 Discussion .......................................................................................................................... 44 3. Review of the potential impacts on ecosystem services ....................................... -
Molecular Identification and Detection of Phytophthora Species on Some Important Mediterranean Plants Including Sweet Chestnut
For. Snow Landsc. Res. 76, 3: 351–356 (2001) 351 Molecular identification and detection of Phytophthora species on some important Mediterranean plants including sweet chestnut Santa Olga Cacciola1, Naomi A. Williams2, David E. L. Cooke2 and James M. Duncan2 1 Dipartimento di Scienze Entomologiche Fitopatologiche, Microbiologiche Agrarie e Zootecniche – Sezione di Patologia Vegetale e Microbiologia Agraria 90128 Palermo, University of Palermo, Italy [email protected] 2 Scottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA, Scotland, U.K. [email protected] Abstract PCR amplification of the internal transcribed spacer regions and 5.8S gene of rDNA and sequencing or restriction digestion of the resultant product were used to confirm the identities of a collection of Phytophthora isolates from a variety of hosts in Italy. All isolates were of previously described species, but a number of new host-pathogen combinations of potential economic import ance were found, including P. palmivora on olive (Olea europaea) trees. Three Phyto ph - thora isolates from chestnut (Castanea sativa) trees were identified as P. cambivora, a known pathogen of chestnut. Existing, but previously unpublished, rapid, sensitive, DNA-based assays for P. cambivora and P. cinnamomi are described. In combination with similar diagnostics for other species such as P. cactorum, these assays could be used to detect nearly all important Phytophthora species known to occur in chestnut. Keywords: Phytophthora, ITS-RFLP, specific primers, diagnosis, Castanea sativa, Italy 1 Introduction The genus Phytophthora comprises approximately 60 species, nearly all of which are pathogens that damage plants and some of which are among the most important pathogens worldwide (ERWIN and RIBEIRO 1996). -
Alnus Glutinosa
bioRxiv preprint doi: https://doi.org/10.1101/2019.12.13.875229; this version posted December 13, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Investigations into the declining health of alder (Alnus glutinosa) along the river Lagan in Belfast, including the first report of Phytophthora lacustris causing disease of Alnus in Northern Ireland Richard O Hanlon (1, 2)* Julia Wilson (2), Deborah Cox (1) (1) Agri-Food and Biosciences Institute, Belfast, BT9 5PX, Northern Ireland, UK. (2) Queen’s University Belfast, Northern Ireland, UK * [email protected] Additional key words: Plant health, Forest pathology, riparian, root and collar rot. Abstract Common alder (Alnus glutinosa) is an important tree species, especially in riparian and wet habitats. Alder is very common across Ireland and Northern Ireland, and provides a wide range of ecosystem services. Surveys along the river Lagan in Belfast, Northern Ireland led to the detection of several diseased Alnus trees. As it is known that Alnus suffers from a Phytophthora induced decline, this research set out to identify the presence and scale of the risk to Alnus health from Phytophthora and other closely related oomycetes. Sampling and a combination of morphological and molecular testing of symptomatic plant material and river baits identified the presence of several Phytophthora species, including Phytophthora lacustris. A survey of the tree vegetation along an 8.5 km stretch of the river revealed that of the 166 Alnus trees counted, 28 were severely defoliated/diseased and 9 were dead. -
Presidio Phytophthora Management Recommendations
2016 Presidio Phytophthora Management Recommendations Laura Sims Presidio Phytophthora Management Recommendations (modified) Author: Laura Sims Other Contributing Authors: Christa Conforti, Tom Gordon, Nina Larssen, and Meghan Steinharter Photograph Credits: Laura Sims, Janet Klein, Richard Cobb, Everett Hansen, Thomas Jung, Thomas Cech, and Amelie Rak Editors and Additional Contributors: Christa Conforti, Alison Forrestel, Alisa Shor, Lew Stringer, Sharon Farrell, Teri Thomas, John Doyle, and Kara Mirmelstein Acknowledgements: Thanks first to Matteo Garbelotto and the University of California, Berkeley Forest Pathology and Mycology Lab for providing a ‘forest pathology home’. Many thanks to the members of the Phytophthora huddle group for useful suggestions and feedback. Many thanks to the members of the Working Group for Phytophthoras in Native Habitats for insight into the issues of Phytophthora. Many thanks to Jennifer Parke, Ted Swiecki, Kathy Kosta, Cheryl Blomquist, Susan Frankel, and M. Garbelotto for guidance. I would like to acknowledge the BMP documents on Phytophthora that proceeded this one: the Nursery Industry Best Management Practices for Phytophthora ramorum to prevent the introduction or establishment in California nursery operations, and The Safe Procurement and Production Manual. 1 Title Page: Authors and Acknowledgements Table of Contents Page Title Page 1 Table of Contents 2 Executive Summary 5 Introduction to the Phytophthora Issue 7 Phytophthora Issues Around the World 7 Phytophthora Issues in California 11 Phytophthora -
Final Report for Project PG0102 Ramorum 060911
Measuring the economic, environmental and ecosystem services value of herita ge gardens, heathland and woodland in the context of determining potential impacts from the regulated plant pathogens Phytophthora ramorum and Phytopthora kernoviae Prepared for: Defra Prepared by: ADAS UK Ltd in conjunction with CJC Consulting, Fera, and the London School of Economics Date: 17th June 2011 0936648 Project FFG0921: TEV at risk from P. ramorum and P. kernoviae Acknowledgements The project team would like to thank the time, effort and support provided by the Defra economists, Phil Cryle, Adam Bell, Meredith Ward and internal reviewers as well as the team at Fera including Alan Inman, Keith Walters, Claire Sansford, and Judith Turner. For assistance and provision of information to: Bruce Rothnie, Jennifer Mcvey, Pat Snowdon, Olly Stephenson, Justin Gilbert, Shona Cameron and Mark Broadmeadow (Forestry Commission), Suzanne Perry and Keith Kirby (Natural England) and Ian Wright (National Trust). Project team: Glyn Jones, Ben Drake (ADAS) – lead authors and contact Nigel Boatman, John Hughes, Kate Somerwill (Fera) Bob Crabtree (CJC Consulting) Susana Mourato (London School of Economics) Project FFG0921: TEV at risk from P. ramorum and P. kernoviae Executive summary Introduction The main aim of this research is to provide estimates of the total value to society of heritage gardens, heathland and woodland which may be under threat from impacts from Phytophthora ramorum (P. ramorum) and Phytophthora kernoviae (P. kernoviae) . The estimates provide an update to the figures used in the 2008 Impact Assessment. Background P. ramorum and P. kernoviae are exotic plant pathogens that have only recently been described in the last decade. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Distribution and Severity of Alder Phytophthora in Alaska1
Proceedings of the Sudden Oak Death Fourth Science Symposium Distribution and Severity of Alder 1 Phytophthora in Alaska G.C. Adams,2 M. Catal,2 and L. Trummer3 Abstract In Alaska, an unprecedented dieback and mortality of Alnus incana ssp. tenuifolia has occurred which stimulated an effort to determine causal agents of the disease. In Europe, similar dieback and mortality of Alnus incana and Alnus glutinosa has been attributed to root rot by a spectrum of newly emergent strains in the hybrid species Phytophthora alni. The variable hybrids of P. alni were grouped into three subspecies: P. alni ssp. alni (PAA), P. alni ssp. multiformis (PAM), and P. alni ssp. uniformis (PAU). From 2007 to 2008, we conducted a survey of Phytophthora species at 30 locations with stream baiting as used in the 2007 national Phytophthora ramorum Early Detection Survey for Forests in the United States. Additionally, Phytophthora species from saturated rhizosphere soil beneath alder stands were baited in situ using rhododendron leaves. We discovered PAU in rhizosphere soils in 2007 at two sample locations in unmanaged stands hundreds of miles apart, on the Kenai Peninsula and near Denali National Park. PAA was reported to be the most aggressive and pathogenic to alders and PAM and PAU were significantly less aggressive than PAA, though still pathogenic. To ascertain whether PAU was of restricted distribution due to recent introduction, or widespread distribution, we extended the survey in 2008 to 81 locations. Intensive sampling was conducted at five alder stands exhibiting dieback and 10 alder genets per location were excavated to expose nearly the entire root system for evaluation of the severity of root rot, ELISA detection of Phytophthora in diseased roots, and isolation of Phytophthora species. -
Status of Aphanomyces Root Rot in Wisconsin
STATUS OF APHANOMYCES ROOT ROT IN WISCONSIN C.R. Grau1 Introduction Alfalfa is the primary forage crop in Wisconsin and is a key element in the state’s dairy industry. The yield of new varieties is greater than that of Vernal and other older varieties due to genetic gains made by breeders over the years. Much of the yield advantage of new varieties may be attributed to efforts to breed for resistance to a wide variety of major pathogens of alfalfa such as Verticillium, Phytophthora, and Aphanomyces. Although the yield gap has widened between new varieties and Vernal, yield of all varieties has declined steadily in Wisconsin during the past 30 years (Wiersma et al., 1997). There are several possible explanations for this situation including changing climate and the difficulties inherent in dealing with such a genetically diverse crop such as alfalfa. From a pathologist’s perspective, new disease-causing organisms or new strains of previously described pathogens may also play a role in limiting yield gains for Wisconsin alfalfa growers. At the University of Wisconsin-Madison, we are conducting research on alfalfa diseases, particularly those caused by organisms that have not been studied previously with respect to their presence and influence on the alfalfa crop. Aphanomyces root rot is one relatively new disease of alfalfa that has been studied in this regard. Overview of Aphanomyces Root Rot Although the cause, the fungus Aphanomyces euteiches, was reported to infect alfalfa in the 1930’s, this organism was considered a minor pathogen of alfalfa. In contrast, Phytophthora root rot, caused by Phytophthora medicaginis, was considered the only significant cause of root disease of alfalfa in wet soil situations. -
Modern Techniques in Colorado Potato Beetle (Leptinotarsa Decemlineata Say) Control and Resistance Management: History Review and Future Perspectives
insects Review Modern Techniques in Colorado Potato Beetle (Leptinotarsa decemlineata Say) Control and Resistance Management: History Review and Future Perspectives Martina Kadoi´cBalaško 1,* , Katarina M. Mikac 2 , Renata Bažok 1 and Darija Lemic 1 1 Department of Agricultural Zoology, Faculty of Agriculture, University of Zagreb, Svetošimunska 25, 10000 Zagreb, Croatia; [email protected] (R.B.); [email protected] (D.L.) 2 Centre for Sustainable Ecosystem Solutions, School of Earth, Atmospheric and Life Sciences, Faculty of Science, Medicine and Health, University of Wollongong, Wollongong 2522, Australia; [email protected] * Correspondence: [email protected]; Tel.: +385-1-239-3654 Received: 8 July 2020; Accepted: 22 August 2020; Published: 1 September 2020 Simple Summary: The Colorado potato beetle (CPB) is one of the most important potato pest worldwide. It is native to U.S. but during the 20th century it has dispersed through Europe, Asia and western China. It continues to expand in an east and southeast direction. Damages are caused by larvae and adults. Their feeding on potato plant leaves can cause complete defoliation and lead to a large yield loss. After the long period of using only chemical control measures, the emergence of resistance increased and some new and different methods come to the fore. The main focus of this review is on new approaches to the old CPB control problem. We describe the use of Bacillus thuringiensis and RNA interference (RNAi) as possible solutions for the future in CPB management. RNAi has proven successful in controlling many pests and shows great potential for CPB control. Better understanding of the mechanisms that affect efficiency will enable the development of this technology and boost potential of RNAi to become part of integrated plant protection in the future. -
The Taxonomy and Biology of Phytophthora and Pythium
Journal of Bacteriology & Mycology: Open Access Review Article Open Access The taxonomy and biology of Phytophthora and Pythium Abstract Volume 6 Issue 1 - 2018 The genera Phytophthora and Pythium include many economically important species Hon H Ho which have been placed in Kingdom Chromista or Kingdom Straminipila, distinct from Department of Biology, State University of New York, USA Kingdom Fungi. Their taxonomic problems, basic biology and economic importance have been reviewed. Morphologically, both genera are very similar in having coenocytic, hyaline Correspondence: Hon H Ho, Professor of Biology, State and freely branching mycelia, oogonia with usually single oospores but the definitive University of New York, New Paltz, NY 12561, USA, differentiation between them lies in the mode of zoospore differentiation and discharge. Email [email protected] In Phytophthora, the zoospores are differentiated within the sporangium proper and when mature, released in an evanescent vesicle at the sporangial apex, whereas in Pythium, the Received: January 23, 2018 | Published: February 12, 2018 protoplast of a sporangium is transferred usually through an exit tube to a thin vesicle outside the sporangium where zoospores are differentiated and released upon the rupture of the vesicle. Many species of Phytophthora are destructive pathogens of especially dicotyledonous woody trees, shrubs and herbaceous plants whereas Pythium species attacked primarily monocotyledonous herbaceous plants, whereas some cause diseases in fishes, red algae and mammals including humans. However, several mycoparasitic and entomopathogenic species of Pythium have been utilized respectively, to successfully control other plant pathogenic fungi and harmful insects including mosquitoes while the others utilized to produce valuable chemicals for pharmacy and food industry. -
Plant, Microbiology and Genetic Science and Technology Duccio
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Florence Research DOCTORAL THESIS IN Plant, Microbiology and Genetic Science and Technology section of " Plant Protection" (Plant Pathology), Department of Agri-food Production and Environmental Sciences, University of Florence Phytophthora in natural and anthropic environments: new molecular diagnostic tools for early detection and ecological studies Duccio Migliorini Years 2012/2015 DOTTORATO DI RICERCA IN Scienze e Tecnologie Vegetali Microbiologiche e genetiche CICLO XXVIII COORDINATORE Prof. Paolo Capretti Phytophthora in natural and anthropic environments: new molecular diagnostic tools for early detection and ecological studies Settore Scientifico Disciplinare AGR/12 Dottorando Tutore Dott. Duccio Migliorini Dott. Alberto Santini Coordinatore Prof. Paolo Capretti Anni 2012/2015 1 Declaration I hereby declare that this submission is my own work and that, to the best of my knowledge and belief, it contains no material previously published or written by another person nor material which to a substantial extent has been accepted for the award of any other degree or diploma of the university or other institute of higher learning, except where due acknowledgment has been made in the text. Duccio Migliorini 29/11/2015 A copy of the thesis will be available at http://www.dispaa.unifi.it/ Dichiarazione Con la presente affermo che questa tesi è frutto del mio lavoro e che, per quanto io ne sia a conoscenza, non contiene materiale precedentemente pubblicato o scritto da un'altra persona né materiale che è stato utilizzato per l’ottenimento di qualunque altro titolo o diploma dell'Università o altro istituto di apprendimento, a eccezione del caso in cui ciò venga riconosciuto nel testo.