Novel Insights Into the Mechanisms of Pregnancy Establishment

Total Page:16

File Type:pdf, Size:1020Kb

Novel Insights Into the Mechanisms of Pregnancy Establishment REPRODUCTIONRESEARCH Porcine sperm capacitation involves tyrosine phosphorylation and activation of aldose reductase Yuki Katoh1,2, Kohsuke Takebayashi1, Akihiko Kikuchi1, Ayumi Iki1, Kazuhiro Kikuchi3, Michiko Tamba1, Akihiro Kawashima1, Manabu Matsuda1 and Naomichi Okamura1,4 1Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tennodai 1-1-1, Tsukuba, Ibaraki 305-8575, Japan, 2Center for Humanities and Sciences, Ibaraki Prefectural University of Health Sciences, Ami 4669-2, Ami, Ibaraki 300-0394, Japan, 3Division of Animal Sciences, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan and 4Graduate School of Science, University of Tokyo, Tokyo 113-0033, Japan Correspondence should be addressed to N Okamura; Email: [email protected] Abstract Mammalian sperm must be activated in the tubal isthmus through capacitation to induce the acrosome reaction and subsequent fertilization. Although the molecular mechanisms involved in capacitation have yet to be fully elucidated, increased concentrations of reactive oxygen species (ROS) and the extent of tyrosine phosphorylation of proteins have been suggested to play central roles in the completion of capacitation. In this study, aldose reductase was for the first time identified as one of the tyrosine-phosphorylated proteins involved in the capacitation of porcine cauda epididymal sperm. Both tyrosine phosphorylation and activity of aldose reductase associated with the particulate fraction of sperm cells were significantly enhanced during capacitation. Alrestatin, a membrane- permeable and specific inhibitor of aldose reductase, plays a role in the inhibition of aldose reductase activity, elevation of intracellular levels of ROS, and induction of hyperactivated motility, all at similar dose dependencies. Alrestatin canceled both the increase in the tyrosine phosphorylation of aldose reductase and the decrease in the glutathione levels in sperm-induced during capacitation. The hyperactivated motility was induced to a higher extent in the presence of glucose than in the presence of fructose. These results indicate that aldose reductase plays an important role in induction of hyperactivation and capacitation of sperm through the elevation of ROS in sperm cells. Furthermore, aldose reductase was shown to be added to sperm during transit through the epididymis, suggesting that aldose reductase is one of the key proteins that support the functional maturation of sperm. Reproduction (2014) 148 389–401 Introduction O’Flaherty 2008). NO% is produced by NO synthases, which have been found in both the head and the flagellar Mammalian sperm require time-dependent changes in regions of sperm (Hou et al. 2008, de Lamirande et al. the female reproductive tract to acquire the capacity to %K 2009). On the other hand, the source of O2 fertilize oocytes; this acquisition is termed as ‘capaci- production has yet to be fully elucidated, although tation’ (Yanagimachi 1994, Fraser 2010, Aitken & Nixon NAD(P)H oxidase has been indicated as the enzyme 2013). Capacitation involves modulation of cell mem- responsible for its production in sperm during capaci- brane properties and signaling cascades, which results tation (Bedard & Krause 2007, Sabeur & Ball 2007, in the hyperactivation of motility and the acquisition of de Lamirande & Lamothe 2009). capacity to undergo the acrosome reaction (Gadella & The polyol pathway contributes to diabetes-induced Harrison 2000, Harrison & Gadella 2005, Salicioni et al. oxidative stress (Chung et al. 2003, Giacco & Brownlee 2007). Several studies have suggested that both gener- 2010). In particular, aldose reductase, the first and ation of reactive oxygen species (ROS) and tyrosine rate-limiting enzyme of the polyol pathway, has been phosphorylation of proteins play essential roles in the suggested to be the major contributor to hyper- process of capacitation (Visconti et al. 1995, 2002, glycemia-induced oxidative stress in nerve cells Leclerc et al. 1996, Lewis & Aitken 2001, O’Flaherty (Vikramadithyan et al. 2005). As the oviductal fluids, et al. 2006a,b, de Lamirande & O’Flaherty 2008). where sperm undergo capacitation, contain higher levels %K ROS such as superoxide anion (O2 ) and nitric oxide of glucose than of fructose (Larose et al. 2012), glucose % (NO ) are produced at the initial step of capacitation and flux through the polyol pathway is likely to increase regulate the downstream events leading to hyperactiva- in capacitating sperm, resulting in the induction of tion and the acrosome reaction (de Lamirande & oxidative stress. In preliminary experiments, aldose q 2014 Society for Reproduction and Fertility DOI: 10.1530/REP-14-0199 ISSN 1470–1626 (paper) 1741–7899 (online) Online version via www.reproduction-online.org Downloaded from Bioscientifica.com at 09/24/2021 08:30:06AM via free access 390 Y Katoh and others reductase in porcine sperm was found to be tyrosine- Sperm motility was observed under the microscope, and the phosphorylated during capacitation. This finding percentages of sperm with hyperactivated motion in all of prompted us to analyze the effects of aldose reductase the motile sperm were calculated. Sperm suspensions of 20 ml activity on capacitation. Herein, we report that tyrosine (1!105 cells/ml) prepared before and after capacitation were phosphorylation and activation of aldose reductase are placed on a prewarmed (37 8C) slide and analysis of sperm involved in porcine sperm capacitation in vitro, which motility was done using a computer-assisted sperm analysis are in turn inhibited by a specific and membrane- (CASA) system (HTM-CEROS; Hamilton Thorne Research, permeable aldose reductase inhibitor, alrestatin. Beverly, MA, USA) (Fig. 1a). Motion parameters such as curvilinear velocity (VCL; mm/s), straight-line velocity (VSL; mm/s), average path velocity (VAP; mm/s), linearity of the Materials and methods curvilinear trajectory (LIN; VSL!100/VCL), straightness (STR; VSL!100/VAP), amplitude of lateral head displacement (ALH; Animals and chemicals mm), and beat cross-frequency (Hz) were determined. For All animal experiments were approved by the Animal flagellar movement analyses, sperm motility was recorded Experiment Committee of the University of Tsukuba. by Nikon-NY-D5100 Super System (Microscope Network, Fresh porcine testes and epididymes were purchased from the Saitama, Japan) on the slide glass with 0.02 mm depth local slaughter house. Alrestatin was obtained from Enzo Life (Hamilton Thorne Research), and both the flagellar beat angle Sciences (Farmingdale, NY,USA). Lysyl endopeptidase, NADPH, (FBA) and the flagellar curvature ratio (FCR) were determined DTNB, glutathione (GSH) reductase, and 6-carboxy-20,70- according to the method of Schmidt & Kamp (2004), as shown dichlorodihydrofluorescein diacetate, diacetoxymethyl ester in Supplementary videos 1 and 2, see section on supplementary (H2DCFDA) were purchased from Wako Pure Chemical data given at the end of this article and Fig. 1b. Industries (Osaka, Japan). GSH was purchased from Tokyo Chemical Industry (Tokyo, Japan). Chlortetracycline (CTC), peroxidase-conjugated anti-mouse IgG antibody, peroxidase- Western blotting analysis of tyrosine-phosphorylated conjugated anti-rabbit IgG, Freund’s complete adjuvant, and proteins Freund’s incomplete adjuvant were obtained from Sigma– Total sperm proteins were extracted with 1% Triton X-100 in Aldrich. Protein A Sepharose 4 Fast Flow, ECL plus, and homogenizing buffer (20 mM Tris–HCl, pH 7.4, containing PreScission Protease were purchased from GE Healthcare 2.5% Protease Inhibitor Cocktail and 0.25% Phosphatase (Chalfont St Giles, Buckinghamshire, UK). Protease Inhibitor Cocktail, Phosphatase Inhibitor Cocktail, and Chemi-Lumi One L (a) were obtained from Nacalai Tesque (Kyoto, Japan). A sorbitol dehydrogenase (SORD) inhibitor, CP-470,711, was kindly donated by Pfizer. All other chemicals were reagent grade. Preparation of cauda epididymal sperm and induction of capacitation Spermatozoa were collected from the porcine cauda epididy- (b) mis by air perfusion through the ductus epididymidis and washed at 20 8C with a noncapacitating medium (Non-cap medium) containing 4.8 mM KCl, 1.2 mM KH2PO4,95mM NaCl, 2 mM sodium pyruvate, and 5.56 mM glucose (pH 7.4) by centrifugation at 400 g for 5 min. The sperm pellets were washed twice more with the Non-cap medium by centrifu- gation as mentioned above. When capacitation was induced, the Cap medium: 2 mM CaCl2,0.4%BSA,and25mM NaHCO3 in the Non-cap medium, was used for washing the FCR = 0.64 y sperm pellets. The sperm forward motility was immediately y x ° determined under the microscope by the addition of Non-cap FCR = 0.91 FBA = 32 x ° medium containing 25 mM NaHCO3. Only sperm samples FBA = 117 with over 95% of the sperm showing progressive motility were used for the experiments. Sperm capacitation was induced Noncapacitated sperm Capacitated sperm according to the method reported by of Tardif et al. (2001), with slight modifications. The washed sperm were incubated either Figure 1 Analysis of sperm motility. (a) Comparison of swimming ! 6 trajectories obtained with CASA (frame rate 30 Hz, frame acquired 80) in 15 ml of Non-cap medium or in Cap medium (5 10 cells/ml) between noncapacitated (left) and capacitated sperm (right). at 37 8C for 3 h in a 5% CO2 atmosphere. Capacitated sperm (b) Representative flagellar movement of noncapacitated (left) and were assessed on the basis of the changes in the pattern of capacitated sperm (right) and determination of FBA
Recommended publications
  • (19) United States (12) Patent Application Publication (10) Pub
    US 20050221029A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2005/0221029 A1 Cater et al. (43) Pub. Date: Oct. 6, 2005 (54) OXYGEN SCAVENGING SYSTEM Publication Classi?cation (76) Inventors: Mark W. Cater, Prairie, MN (US); (51) Int. Cl? ..................................................... .. B65D 1/00 Donald A. Grindsta?', Apple Valley, (52) US. Cl. .......................................................... .. 428/341 MN (US) (57) ABSTRACT Correspondence Address: The oxygen scavenging system of the subject invention NAWROCKI, ROONEY & SIVERTSON contemplates a composition, system and appurtenant meth SUITE 401, BROADWAY PLACE EAST odology for substantially eliminating elemental oxygen 3433 BROADWAY STREET NORTHEAST from packaged oxygen sensitive products. The composition MINNEAPOLIS, MN 554133009 or scavenging agent includes an oxidoreductase enZyme, a suitable energy source or substrate for the enZyme, and a (21) Appl. No.: 10/518,292 buffer. The composition binds oxygen When exposed to moisture, thereby reducing the level of oxygen in a closed (22) PCT Filed: Jun. 17, 2003 (e.g., sealed) space such as a food package or the like. More particularly and preferably, the composition includes glu (86) PCT No.: PCT/US03/19029 cose oxidase in an amount of betWeen 1 and 100 activity units (U) per gram, catalase in an amount of betWeen 1 and Related US. Application Data 300 activity units (U) per gram, dextrose in an amount of betWeen about 20 and 99 percent by Weight, and sodium (60) Provisional application No. 60/389,246, ?led on Jun. bicarbonate in an amount of betWeen about 1 and 80 percent 17, 2002. by Weight. US 2005/0221029 A1 Oct. 6, 2005 OXYGEN SCAVENGING SYSTEM or sachets.
    [Show full text]
  • Hexose Oxidase from Chondrus Crispus Expressed in Hansenula Polymorpha
    Chemical and Technical Assessment 63rdJECFA Hexose Oxidase from Chondrus Crispus expressed in Hansenula Polymorpha CHEMICAL AND TECHNICAL ASSESSMENT (CTA) Prepared by Jim Smith and Zofia Olempska-Beer © FAO 2004 1 Summary Hexose oxidase (HOX) is an enzyme that catalyses the oxidation of C6-sugars to their corresponding lactones. A hexose oxidase enzyme produced from a nonpathogenic and nontoxigenic genetically engineered strain of the yeast Hansenula polymorpha has been developed for use in several food applications. It is encoded by the hexose oxidase gene from the red alga Chondrus crispus that is not known to be pathogenic or toxigenic. C. crispus has a long history of use in food in Asia and is a source of carrageenan used in food as a stabilizer. As this alga is not feasible as a production organism for HOX, Danisco has inserted the HOX gene into the yeast Hansenula polymorpha. The information about this enzyme is provided in a dossier submitted to JECFA by Danisco, Inc. (Danisco, 2003). Based on the hexose oxidase cDNA from C. crispus, a synthetic gene was constructed that is more suitable for expression in yeast. The synthetic gene encodes hexose oxidase with the same amino acid sequence as that of the native C. crispus enzyme. The synthetic gene was combined with regulatory sequences, promoter and terminator derived from H. polymorpha, and inserted into the well-known plasmid pBR322. The URA3 gene from Saccharomyces cerevisiae (Baker’s yeast) and the HARS1 sequence from H. polymorpha were also inserted into the plasmid. The URA3 gene serves as a selectable marker to identify cells containing the transformation vector.
    [Show full text]
  • (FAD) and Flavin Mononucleotide (FMN) to Enzymes: the Current State of Affairs
    Protein Science (1998). 77-20. Cambridge University Press. Printed in the USA. Copyright 0 1998 The Protein Society REVIEW Covalent attachment of flavin adenine dinucleotide (FAD) and flavin mononucleotide (FMN) to enzymes: The current state of affairs MARTIN MEWIES,' WILLIAM S. McINTIRE,~.~AND NIGEL S. SCRUTTON' ' Department of Biochemistry, University of Leicester, Adrian Building, University Road, Leicester LEI 7RH UK * Molecular Biology Division, Department of Veterans Affairs Medical Center, San Francisco, California 94121 Department of Biochemistry and Biophysics and Department of Anesthesia, University of California, San Francisco, California 94565 (RECEIVEDMay 29, 1997; ACCEFTEDJuly 18, 1997) Abstract The first identified covalent flavoprotein, a component of mammalian succinate dehydrogenase, was reported 42 years ago. Since that time, more than 20 covalent flavoenzymes have been described, each possessing one of five modes of FAD or FMN linkage to protein. Despite the early identification of covalent flavoproteins, the mechanisms of covalent bond formation and the roles of the covalent links are only recently being appreciated. The main focus of this review is, therefore, one of mechanism and function, in addition to surveying the types of linkage observed and the methods employed for their identification. Case studies are presented for a variety of covalent flavoenzymes, from which general findings are beginning to emerge. Keywords: covalent flavoproteins; flavin adenine dinucleotide; flavin mononucleotide; flavinylation; redox cofactors Cofactors are recruited by protein molecules to extend the chem- lipoate-protein ligases (Brookfield et al., 1991; Moms et al., 1994), istry available within the active sites of enzymes. The chemistries respectively. In a similar fashion, a heme cytochrome c lyase (Steiner displayed are variable and the range of protein-specific cofactors et al., 1996) is responsible for the covalent addition of heme to two available bears testimony to the types of biological reaction achieved Cys residues via thioether linkages.
    [Show full text]
  • Enzyme DHRS7
    Toward the identification of a function of the “orphan” enzyme DHRS7 Inauguraldissertation zur Erlangung der Würde eines Doktors der Philosophie vorgelegt der Philosophisch-Naturwissenschaftlichen Fakultät der Universität Basel von Selene Araya, aus Lugano, Tessin Basel, 2018 Originaldokument gespeichert auf dem Dokumentenserver der Universität Basel edoc.unibas.ch Genehmigt von der Philosophisch-Naturwissenschaftlichen Fakultät auf Antrag von Prof. Dr. Alex Odermatt (Fakultätsverantwortlicher) und Prof. Dr. Michael Arand (Korreferent) Basel, den 26.6.2018 ________________________ Dekan Prof. Dr. Martin Spiess I. List of Abbreviations 3α/βAdiol 3α/β-Androstanediol (5α-Androstane-3α/β,17β-diol) 3α/βHSD 3α/β-hydroxysteroid dehydrogenase 17β-HSD 17β-Hydroxysteroid Dehydrogenase 17αOHProg 17α-Hydroxyprogesterone 20α/βOHProg 20α/β-Hydroxyprogesterone 17α,20α/βdiOHProg 20α/βdihydroxyprogesterone ADT Androgen deprivation therapy ANOVA Analysis of variance AR Androgen Receptor AKR Aldo-Keto Reductase ATCC American Type Culture Collection CAM Cell Adhesion Molecule CYP Cytochrome P450 CBR1 Carbonyl reductase 1 CRPC Castration resistant prostate cancer Ct-value Cycle threshold-value DHRS7 (B/C) Dehydrogenase/Reductase Short Chain Dehydrogenase Family Member 7 (B/C) DHEA Dehydroepiandrosterone DHP Dehydroprogesterone DHT 5α-Dihydrotestosterone DMEM Dulbecco's Modified Eagle's Medium DMSO Dimethyl Sulfoxide DTT Dithiothreitol E1 Estrone E2 Estradiol ECM Extracellular Membrane EDTA Ethylenediaminetetraacetic acid EMT Epithelial-mesenchymal transition ER Endoplasmic Reticulum ERα/β Estrogen Receptor α/β FBS Fetal Bovine Serum 3 FDR False discovery rate FGF Fibroblast growth factor HEPES 4-(2-Hydroxyethyl)-1-Piperazineethanesulfonic Acid HMDB Human Metabolome Database HPLC High Performance Liquid Chromatography HSD Hydroxysteroid Dehydrogenase IC50 Half-Maximal Inhibitory Concentration LNCaP Lymph node carcinoma of the prostate mRNA Messenger Ribonucleic Acid n.d.
    [Show full text]
  • Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
    Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase
    [Show full text]
  • Masterarbeit / Master's Thesis
    MASTERARBEIT / MASTER’S THESIS Titel der Masterarbeit / Title of the Master‘s Thesis „Physiology, Metabolism and Biohydrogen Production of Desulfurococcus fermentans“ verfasst von / submitted by Barbara Reischl, BSc angestrebter akademischer Grad / in partial fulfilment of the requirements for the degree of Master of Science (MSc) Wien, 2016 / Vienna 2016 Studienkennzahl lt. Studienblatt / A 066 830 degree programme code as it appears on the student record sheet: Studienrichtung lt. Studienblatt / Molecular Microbiology, Microbial Ecology degree programme as it appears on and Immunobiology the student record sheet: Betreut von / Supervisor: Univ.-Prof. Dipl.-Biol. Dr. Christa Schleper Mitbetreut von / Co-Supervisor: Mag. Mag. Dr. Simon Karl-Maria Rasso Rittmann, Bakk. 2 Table of Contents 1. Introduction .......................................................................................................... 5 1.1 Role of Biohydrogen ................................................................................................ 5 1.2 Hydrogenases ......................................................................................................... 6 1.3 Characteristics of Desulfurococcus fermentans ....................................................... 7 1.4 Aims of this Study ................................................................................................... 8 2. Material and Methods ............................................................................................ 9 2.1 Chemicals ..............................................................................................................
    [Show full text]
  • University of Groningen Exploring the Cofactor-Binding and Biocatalytic
    University of Groningen Exploring the cofactor-binding and biocatalytic properties of flavin-containing enzymes Kopacz, Malgorzata IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2014 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Kopacz, M. (2014). Exploring the cofactor-binding and biocatalytic properties of flavin-containing enzymes. Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). The publication may also be distributed here under the terms of Article 25fa of the Dutch Copyright Act, indicated by the “Taverne” license. More information can be found on the University of Groningen website: https://www.rug.nl/library/open-access/self-archiving-pure/taverne- amendment. Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. Download date: 29-09-2021 Exploring the cofactor-binding and biocatalytic properties of flavin-containing enzymes Małgorzata M. Kopacz The research described in this thesis was carried out in the research group Molecular Enzymology of the Groningen Biomolecular Sciences and Biotechnology Institute (GBB), according to the requirements of the Graduate School of Science, Faculty of Mathematics and Natural Sciences.
    [Show full text]
  • Metabolic Network-Based Stratification of Hepatocellular Carcinoma Reveals Three Distinct Tumor Subtypes
    Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes Gholamreza Bidkhoria,b,1, Rui Benfeitasa,1, Martina Klevstigc,d, Cheng Zhanga, Jens Nielsene, Mathias Uhlena, Jan Borenc,d, and Adil Mardinoglua,b,e,2 aScience for Life Laboratory, KTH Royal Institute of Technology, SE-17121 Stockholm, Sweden; bCentre for Host-Microbiome Interactions, Dental Institute, King’s College London, SE1 9RT London, United Kingdom; cDepartment of Molecular and Clinical Medicine, University of Gothenburg, SE-41345 Gothenburg, Sweden; dThe Wallenberg Laboratory, Sahlgrenska University Hospital, SE-41345 Gothenburg, Sweden; and eDepartment of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden Edited by Sang Yup Lee, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea, and approved November 1, 2018 (received for review April 27, 2018) Hepatocellular carcinoma (HCC) is one of the most frequent forms of of markers associated with recurrence and poor prognosis (13–15). liver cancer, and effective treatment methods are limited due to Moreover, genome-scale metabolic models (GEMs), collections tumor heterogeneity. There is a great need for comprehensive of biochemical reactions, and associated enzymes and transporters approaches to stratify HCC patients, gain biological insights into have been successfully used to characterize the metabolism of subtypes, and ultimately identify effective therapeutic targets. We HCC, as well as identify drug targets for HCC patients (11, 16–18). stratified HCC patients and characterized each subtype using tran- For instance, HCC tumors have been stratified based on the uti- scriptomics data, genome-scale metabolic networks and network lization of acetate (11). Analysis of HCC metabolism has also led topology/controllability analysis.
    [Show full text]
  • 12) United States Patent (10
    US007635572B2 (12) UnitedO States Patent (10) Patent No.: US 7,635,572 B2 Zhou et al. (45) Date of Patent: Dec. 22, 2009 (54) METHODS FOR CONDUCTING ASSAYS FOR 5,506,121 A 4/1996 Skerra et al. ENZYME ACTIVITY ON PROTEIN 5,510,270 A 4/1996 Fodor et al. MICROARRAYS 5,512,492 A 4/1996 Herron et al. 5,516,635 A 5/1996 Ekins et al. (75) Inventors: Fang X. Zhou, New Haven, CT (US); 5,532,128 A 7/1996 Eggers Barry Schweitzer, Cheshire, CT (US) 5,538,897 A 7/1996 Yates, III et al. s s 5,541,070 A 7/1996 Kauvar (73) Assignee: Life Technologies Corporation, .. S.E. al Carlsbad, CA (US) 5,585,069 A 12/1996 Zanzucchi et al. 5,585,639 A 12/1996 Dorsel et al. (*) Notice: Subject to any disclaimer, the term of this 5,593,838 A 1/1997 Zanzucchi et al. patent is extended or adjusted under 35 5,605,662 A 2f1997 Heller et al. U.S.C. 154(b) by 0 days. 5,620,850 A 4/1997 Bamdad et al. 5,624,711 A 4/1997 Sundberg et al. (21) Appl. No.: 10/865,431 5,627,369 A 5/1997 Vestal et al. 5,629,213 A 5/1997 Kornguth et al. (22) Filed: Jun. 9, 2004 (Continued) (65) Prior Publication Data FOREIGN PATENT DOCUMENTS US 2005/O118665 A1 Jun. 2, 2005 EP 596421 10, 1993 EP 0619321 12/1994 (51) Int. Cl. EP O664452 7, 1995 CI2O 1/50 (2006.01) EP O818467 1, 1998 (52) U.S.
    [Show full text]
  • Oxidative Enzymes As Sustainable Industrial Biocatalysts 2010
    Oxidative Enzymes as Sustainable Industrial Biocatalysts 2010 STUCTURE-FUNCTION OF FLAVOENZYMES OF INDUSTRIAL INTEREST W.J.H. van Berkel Laboratory of Biochemistry. Wageningen University. Wageningen. The Netherlands E‐mail: [email protected] 1. Introduction Flavoenzymes are attractive biocatalysts because of the selectivity, controllability and efficiency of their reactions. Flavoenzymes typically contain a non‐covalently bound FMN or FAD cofactor involved in redox chemistry (van Berkel 2008). In some flavoenzymes, the isoalloxazine moiety of the flavin is covalently linked to the polypeptide chain (Hefti et al. 2003; Heuts et al. 2009). This can be beneficial for cofactor economy, protein stability, and the enzyme oxidation power. Flavoenzymes constitute about 2% of all enzymes and can be classified according to sequence, fold, and function. Here we focus on the structure‐function of flavoenzymes that are of interest for applications in the pharmaceutical, fine‐chemical and food industries. 2. Flavoprotein reductases Flavoprotein reductases primarily use NAD(P)H as electron donor and pass these electrons to a protein substrate or another electron acceptor. Flavoprotein reductases have long been ignored for biocatalytic applications, but this scenario has changed since the characterization of a number of members of the Old Yellow Enzyme (OYE) family. Ene reductases of the OYE family catalyze the asymmetric reduction of activated α,β‐unsaturated alkenes to the corresponding alkanes yielding valuable products containing one or two chiral carbon centres. Combining the ene reductases with a suitable NAD(P)H recycling catalyst enables highly stereoselective alkene reductions on a preparative scale that are difficult to perform by conventional means (Stuermer et al.
    [Show full text]
  • Carbon Source Feeding Strategies for Recombinant Protein Expression in Pichia Pastoris and Pichia Methanolica
    African Journal of Biotechnology Vol. 9(15), pp. 2173-2184, 12 April, 2010 Available online at http://www.academicjournals.org/AJB ISSN 1684–5315 © 2010 Academic Journals Review Carbon source feeding strategies for recombinant protein expression in Pichia pastoris and Pichia methanolica Raúl A. Poutou-Piñales1, 4*, Henry A. Córdoba-Ruiz2, Luis A. Barrera-Avellaneda3 and Julio M. Delgado-Boada4 1Laboratorio de Biotecnología Aplicada, Grupo de Biotecnología Ambiental e Industrial (GBAI), Departamento de Microbiología. Facultad de Ciencias, Pontificia Universidad Javeriana (PUJ). Bogota, D.C., Colombia. 2Departamento de Química. Facultad de Ciencias, Pontificia Universidad Javeriana (PUJ). Bogota, D.C., Colombia. 3Instituto de Errores Innatos del Metabolismo (IEIM), Pontificia Universidad Javeriana (PUJ). Bogota D.C., Colombia. 4Biotechnova Ltda. Bogota, D.C. Colombia. Accepted 28 December, 2009 Pichia pastoris and Pichia methanolica have been used as expression systems for the production of recombinant protein. The main problems of the production are the slow hierarchic consumption of ethanol and acetate which cause toxicity problems due to methanol accumulation when this surpasses 0.5 gl-1. In some cases, the laboratory scale cultures does not show the methanol accumulation problems because the cells are usually washed before changing the depleted carbon source culture media, by a fresh one, supplemented with methanol; a strategy that is clearly inapplicable in the industrial productions. Other authors use to feed the methanol before the depletion of glycerol or D- glucose, but this practice does not guaranty the ethanol and acetate fast consumption; leading to methanol accumulation and toxicity problems. It was concluded that pre-induction stage strategy should be studied in detail and that it is very important to start the induction stage with a concentration of biomass as great as possible.
    [Show full text]
  • (12) Patent Application Publication (10) Pub. No.: US 2003/0094384 A1 Vreeke Et Al
    US 2003OO94384A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2003/0094384 A1 Vreeke et al. (43) Pub. Date: May 22, 2003 (54) REAGENTS AND METHODS FOR Related U.S. Application Data DETECTING ANALYTES, AND DEVICES COMPRISING REAGENTS FOR DETECTING (60) Provisional application No. 60/318,716, filed on Sep. ANALYTES 14, 2001. Publication Classification (76) Inventors: Mark S. Vreeke, Houston, TX (US); Mary Ellen Warchal-Windham, (51) Int. Cl. ................................................ G01N 27/327 Osceola, IN (US); Christina Blaschke, (52) U.S. Cl. ................................... 205/777.5; 204/403.01 White Pigeon, MI (US); Barbara J. Mikel, Mishawaka, IN (US); Howard A. Cooper, Elkhart, IN (US) (57) ABSTRACT Reagents for detecting an analyte are described. A reagent Correspondence Address: comprises (a) an enzyme Selected from the group consisting Jerome L. Jeffers, Esq. of a flavoprotein, a quinoprotein, and a combination thereof; Bayer Corporation and (b) a mediator Selected from the group consisting of a P.O. BOX 40 phenothiazine, a phenoxazine, and a combination thereof. In Elkhart, IN 46515-0040 (US) addition, reagents having good Stability to radiation Steril ization are described. Electrochemical Sensors and Sampling devices comprising Such reagents, methods of producing a (21) Appl. No.: 10/231,539 Sterilized device including Such reagents, and methods for detecting an analyte which utilize Such reagents are (22) Filed: Sep. 3, 2002 described as well. Layer 1 Layer 2 Layer3 Laminated Structure Patent Application Publication May 22, 2003. Sheet 1 of 6 US 2003/0094384 A1 FIG. 1 Layer 1 Layer 2 Layer3 Laminated Structure Patent Application Publication May 22, 2003.
    [Show full text]