THE EFFECT of CHEMICAL TREATMENTS on the CELLULAR STRUCTURE of CORK Key Words

Total Page:16

File Type:pdf, Size:1020Kb

THE EFFECT of CHEMICAL TREATMENTS on the CELLULAR STRUCTURE of CORK Key Words IAWA Bulletin n. s., Vol. 9 (4), 1988: 337-345 THE EFFECT OF CHEMICAL TREATMENTS ON THE CELLULAR STRUCTURE OF CORK by Helena Pereira* and A. Velez Marques** Summary The effect of chemical treatments on the pressibility (Ross & Krahmer 1971). An ob­ cellular structure of cork from Quercus suber vious example is given by the cork of the L. was studied using SEM. Treatments in­ cork-oak (Quercus suber L.), as it forms a cluded successive solvent extractions with thick layer of several centimetres with out­ petroleum ether, ethanol and water; desuber­ standing properties of impermeability to liq­ inisation with NaOCH3 in methanol; and de­ uids, compressibility and resilience, and en­ lignification with HNOJ in CH3COOH. ergy absorbing capacity (Gibson et al. 1981). Solvents swell cork anisotropically, with The cellular structure of Q. subercork has considerably larger dimensional increases in been shown to be regular and homogeneous the radial direction, but removal of extractives with rare intercellular voids apart from the does not change its cellular structure. The presence of lenticular channels. The cells are properties of cork are affected by the chemi­ approximately prismatic, mostly pentagonal cal treatments that react with and remove the and hexagonal , stacked in rows in the radial main cell wall structural components. The direction of the tree, and have corrugations in removal of suberin leaves holed cell walls the radial and transverse walls (Pereira et ai. and reveals a loose ribbonlike network; lignin 1987). These structural characteristics are acts as a supporting framework and deligni­ generally invoked when explaining some of fied cell walls collapse. In both cases, cork the properties of cork (Gibson et ai. 1981, looses its low density, compressibility and Rosa & Fortes 1987a, b). However, it may resilience. be assumed that chemical composition and Key words: Quercus suber; chemical treat­ wall topochemistry will also contribute to es­ ments; cell walls; suberin; lignin; solvent tablish these properties. extractions. The role of the different cell wall compo­ nents is already well understood in relation to Introduction the properties of wood. However, cork cells Cork cells in tree barks are thin-walled differ from wood cells in their chemical com­ cells, unpitted or with very infrequent pits. position, with their most typical chemical fea­ They are observed in sections with an ap­ ture being the presence of suberin and waxes. proximate polygonal form and they show In Q. suber, cork is made up mainly of sub­ corrugations or wrinkling of the cell walls erin and lignin (respectively, 40% and 22%); (Esau 1965; Krahmer & Wellons 1973; Ho­ cellulose only represents approximately 9% ward 1977). Cork cells have physical and of cork (Pereira 1988a). The comparison of mechanical properties that differ from the these values with the average chemical com­ other bark and wood cells, namely in relation position of wood shows a similar lignifica­ to density, dimensional variation and com- tion but very different cellulose contents, * Departamento de Engenharia Florestal, Instituto Superior de Agronomia, Universidade Tee­ nica de Lisboa, 1399 Lisboa Codex, Portugal. ** Departamento de Qufmica Organica, Instituto Superior de Engenharia de Lisboa, 1900 Lis­ boa, Portugal. Downloaded from Brill.com10/07/2021 05:40:44PM via free access 338 IAWA Bulletin n.s ., Vol. 9 (4),1988 suggesting that the role of main cell wall After each treatment the cubes were air­ component played by cellulose in wood is dried, and dimensional variation and mass taken by suberin in the case of cork. yield were measured. For the solvent extrac­ Some aspects of the role of the different tions, the absorption of solvent was cal­ chemical components in establishing cell culated from the mass increase after each ex­ structure were investigated by observing cork traction and the extracted material was gravi­ samples of Q. suberafter the removal of cell metrically determined in the solvent. wall components with different chemical Samples for observation in the scanning treatments. This paper reports the results ob­ electron microscope were cut from the cubes tained by using scanning electron microscopy and coated with gold (approximately 200 A on the chemically treated cork samples. thickness). The surface and the interior ofthe cubes were observed in radial, transverse and tangential surfaces. Material and Methods Reproduction cork from Quercus suberL. Results and Discussion with an average thickness of 2.4 cm and of The chemical treatments of the cork cubes good quality (low porosity and absence of under the conditions used in this study defects) was used in this study . Samples with should only affect the superficial layers of the approximate dimensions of 2 x 2 x 2 em were samples, since reactants and reaction times prepared by cutting cubes from the same cork were similar to those used when attacking plank. All the dried phelloderm and phloem cork samples of much smaller dimension, tissues from the outer surface of cork were e. g. 40-60 mesh fractions, as in the course removed prior to the cutting. The cubes were of chemical analysis (Pereira 1988a). This measured, and weighed and subjected to the was in fact the case, as seen macroscopically following chemical treatments: by the extent of penetration of reagents and 1. Successive solvent extractions, in soxhlet, the colour change of the cork, and sub­ with petroleum ether, ethanol and water sequently observed in the scanning electron during 10 h for each solvent. microscope. This allowed the comparison 2. Desuberinisation of the pre-extracted cork between chemically changed and unchanged cubes with 3% NaOCH3 in methanol in cells, respectively at the surface and in the reflux for 6 h. interior of each cork cube. 3. Treatment of the pre-extracted cork cubes The results of the successive solvent ex­ with a solution of HN03 and CH3COOH tractions are shown in Table 1 in relation to (aqueous solution of 90 ml HN03 and dimensional variations and solvent absorp­ 732 ml CH3COOH per liter) in reflux for tion. Absorption of solvent and swelling of 1 h. the cork cubes occurred in variable extents Table 1. Successive solvent extraction of cork cubes with petroleum ether, ethanol and water . % of initial cork weight % of initial linear dimension Extracted Weight Dimensional swelling material increase* Radial Tangential Axial Petroleum ether 0.2 3.0 2.5 0.0 0.3 Ethanol 0.9 71.2 4.8 1.8 2.3 Water 4.0 70.4 9.5 1.9 2.5 * After extraction, before drying . Downloaded from Brill.com10/07/2021 05:40:44PM via free access Pereira & Velez Marques - Chemical treatment of cork 339 Fig. 1. SEM photographs of the surface of cork cubes after solvent extraction . - a: Petroleum ether extracted; transverse section showing the general structure of the cork tissue, namely the corrugations of cell walls and late cork cells at the end of an annual growth ring (arrow); bar = 100 urn. - b: Water extracted; radial section showing the flattening of cell wall corrugations; bar = 20 urn, - c: Petroleum ether extracted; tangential section showing cell wall voids and lamellation (arrows); bar = 10 urn. with the different solvents. Swelling was ob­ of swelling with much larger increases in the served after each solvent treatment but the ef­ radial direction. This is probably the result of fect of petroleum ether was smaller than that the cell geometry and corresponds to the ef­ of ethanol or water: the increase in volume fect of flattening of the cell wall corrugations; corresponded to 2.8% when using petroleum this will cause a larger increase in the cellu­ ether, 9.1% after the ethanol treatment and lar prism height and therefore an enhanced 14.4% with the final extraction with water. swelling in the radial direction. Petroleum The dimensional variations show anisotropy ether was not significantly absorbed by cork, Downloaded from Brill.com10/07/2021 05:40:44PM via free access 340 IAWA Bulletin n.s., Vol. 9 (4),1988 Downloaded from Brill.com10/07/2021 05:40:44PM via free access Pereira & Velez Marques - Chemical treatment of cork 341 Fig. 2. SEM photographs of the pre-extracted cork cubes after desuberinisation. - a: The sur­ face of the sample in radial section, showing transition between two annual growth rings with failure between growth rings; bar = 100 11m. - b: Radial section of the interior of one sample, from the surface (arrow) inwards; bar = 100 11m. - c: As b, showing the transition between the area of chemical attack and the interior of sample; bar = 20 11m. - d: Radial section; holed cell walls at the surface of sample; bar = 111m. - e: Transverse section showing fragments of terti­ ary walls; bar = 20 11m. - f: Detail of e, showing a loose intercrossed cell wall structure; bar = 5 11m. - g: Cells where desuberinisation is beginning; bar = 11m. - h: Amorphous material in the desuberinised region; bar =211m. as was the case with ethanol and water. Ab­ traction (Fig. la, b). The removal of extrac­ sorption of the latter accounted for approxi­ tives does not alter the physical aspect of the mately 70% weight variation in the samples. cell wall and its thickness remains un­ Absorption into the cork cell wall seems to changed. However, extraction of waxes by require a polar and H-bonding solvent such petroleum ether in some cases causes voids in as ethanol or water. A similar effect in di­ the cell wall and seems to facilitate the sepa­ mensional variations and solvent swelling ration of the cell wall into lamellae, as ob­ characteristics has been reported for cork served in Figure 1c both in transverse and cells in Douglas-fir bark (Krahmer & Wel­ tangential sections of the cell wall. lons 1973). This is in agreement with the localisation The SEM observations of the extracted of soluble waxes between the suberin lamel­ samples did not show remarkable differences lae in the secondary wall of cork, as pro­ in the structure of cork after the solvent ex­ posed by Sitte (1962, 1975).
Recommended publications
  • ATP-Citrate Lyase Has an Essential Role in Cytosolic Acetyl-Coa Production in Arabidopsis Beth Leann Fatland Iowa State University
    Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 2002 ATP-citrate lyase has an essential role in cytosolic acetyl-CoA production in Arabidopsis Beth LeAnn Fatland Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Molecular Biology Commons, and the Plant Sciences Commons Recommended Citation Fatland, Beth LeAnn, "ATP-citrate lyase has an essential role in cytosolic acetyl-CoA production in Arabidopsis " (2002). Retrospective Theses and Dissertations. 1218. https://lib.dr.iastate.edu/rtd/1218 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. ATP-citrate lyase has an essential role in cytosolic acetyl-CoA production in Arabidopsis by Beth LeAnn Fatland A dissertation submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Major: Plant Physiology Program of Study Committee: Eve Syrkin Wurtele (Major Professor) James Colbert Harry Homer Basil Nikolau Martin Spalding Iowa State University Ames, Iowa 2002 UMI Number: 3158393 INFORMATION TO USERS The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleed-through, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted.
    [Show full text]
  • On the Determínation of Suberin and Other Structural Components in Cork from Quercus Suber L
    Recebido em 14 de Dezembro de 1987 On the determínation of suberin and other structural components in cork from Quercus suber L. by A. VELEZ MARQUES Dep. Quím. Org., Instituto Superior de Engenharia de Lisboa and HELENA PEREIRA Dep. Eng. Florestal, Instituto Superior de Agronomia RESUMO Estudou-se a despolimerização da suberina na cortiça de Quercus suber L. em relação à influência da concentração de reagente e tempo de reacção, utilizando uma transesterificação com metóxido de sódio em metanol. A de­ terminação da lenhina e dos polisacáridos foi feita em cortiça dessuberinizada. A quantidade de suberina aumenta com a concentração de metóxido, ao contrário do que se passa para os outros componentes; o mesmo se observa com o aumento do tempo da reacção. A composição monomérica dos polisacáridos mantém-se sensivelmente constante para todas as condições de metanólise. Propõe-se um método de despolimerização de suberina utilizando metóxido de sódio a 3% em metanol, em refluxo durante 3h, para uma amostra de l,5g de cortiça livre de extractivos, de modo a maximizar a despolimerização da suberina mas com menores efeitos nas determinações subsequentes dos outros componentes estruturais. 322 ANAIS DO INSTITUTO SUPERIOR DE AGRONOMIA SYNOPSIS The depolymerization of suberin in cork from Quercus suber L. was stu- died in relation to the effect of reagent concentration and reaction time, using a transesterification witli sodium methoxide in methanol. Lignin and carbohy- drates were determined in the desuberinised cork samples. The amount of suberin increases with the concentration of methoxide con- trarily to the other componentes; the same effect is observed with an increase of reaction time.
    [Show full text]
  • The Age of Coumarins in Plant–Microbe Interactions Pca Issue Special Ioannis A
    The Age of Coumarins in Plant–Microbe Interactions Special Issue Ioannis A. Stringlis *, Ronnie de Jonge and Corne´ M. J. Pieterse Plant-Microbe Interactions, Department of Biology, Science4Life, Utrecht University, Padualaan 8, Utrecht, 3584 CH, The Netherlands *Corresponding author: E-mail, [email protected]; Fax,+31 30 253 2837. (Received February 9, 2019; Accepted April 23, 2019) Coumarins are a family of plant-derived secondary metab- For example, the cell wall-fortifying compounds lignin, cutin olites that are produced via the phenylpropanoid pathway. and suberin form structural barriers that inhibit pathogen in- In the past decade, coumarins have emerged as iron-mobi- vasion (Doblas et al. 2017). Other phenylpropanoid derivatives – Review lizing compounds that are secreted by plant roots and aid in such as flavonoids, anthocyanins and tannins participate in iron uptake from iron-deprived soils. Members of the cou- other aspects of environmental stress adaptation, or in plant marin family are found in many plant species. Besides their growth and physiology (Vogt 2010). More specifically, flavon- role in iron uptake, coumarins have been extensively studied oids emerged as important mediators of the chemical commu- for their potential to fight infections in both plants and nication between leguminous plants and beneficial nitrogen- animals. Coumarin activities range from antimicrobial and fixing rhizobia. In this mutualistic interaction, root-secreted fla- antiviral to anticoagulant and anticancer. In recent years, vonoids act as chemoattractants for rhizobia and activate genes studies in the model plant species tobacco and required for nodulation, which established the initial paradigm Arabidopsis have significantly increased our understanding for the role phenylpropanoid-derived metabolites in beneficial of coumarin biosynthesis, accumulation, secretion, chemical plant–microbe interactions (Fisher and Long 1992, Phillips modification and their modes of action against plant patho- 1992).
    [Show full text]
  • Global Transcriptome Analysis and Characterization of Dryopteris Fragrans
    Lu et al. BMC Genomics (2018) 19:471 https://doi.org/10.1186/s12864-018-4843-2 RESEARCHARTICLE Open Access Global transcriptome analysis and characterization of Dryopteris fragrans (L.) Schott sporangium in different developmental stages Zhen Lu1, Qingyang Huang1,3, Tong Zhang1, Baozhong Hu2* and Ying Chang1* Abstract Background: Dryopteris fragrans (D. fragrans) is a potential medicinal fern distributed in volcanic magmatic rock areas under tough environmental condition. Sporangia are important organs for fern reproduction. This study was designed to characterize the transcriptome characteristics of the wild D. fragrans sporangia in three stages (stage A, B, and C) with the aim of uncovering its molecular mechanism of growth and development. Results: Using a HiSeq 4000, 79.81 Gb clean data (each sample is at least 7.95 GB) were obtained from nine samples, with three being supplied from each period, and assembled into 94,705 Unigenes, among which 44,006 Unigenes were annotated against public protein databases (NR, Swiss-Prot, KEGG, COG, KOG, GO, eggNOG and Pfam). Furthermore, we observed 7126 differentially expressed genes (DEG) (Fold Change > 4, FDR < 0.001), 349,885 SNP loci, and 10,584 SSRs. DEGs involved in DNA replication and homologous recombination were strongly expressed in stage A, and several DEGs involved in cutin, suberin and wax biosynthesis had undergone dramatic changes during development, which was consistent with morphological observations. DEGs responsible for secondary metabolism and plant hormone signal transduction changed clearly in the last two stages. DEGs homologous to those known genes associated with the development of reproductive organs of flowering plants have also been validated and discussed, such as AGL61, AGL62, ONAC010.
    [Show full text]
  • A 13C NMR Study Using Isotopically Labeled Precursors
    3298 J. Agric. Food Chem. 2000, 48, 3298−3304 Biosynthesis, Molecular Structure, and Domain Architecture of Potato Suberin: A 13C NMR Study Using Isotopically Labeled Precursors Bin Yan and Ruth E. Stark* Department of Chemistry, Graduate School and College of Staten Island of the City University of New York, 2800 Victory Boulevard, Staten Island, New York 10314 Although suberin in potato wound periderm is known to be a polyester containing long-chain fatty acids and phenolics embedded within the cell wall, many aspects of its molecular structure and polymer-polymer connectivities remain elusive. The present work combines biosynthetic incorpora- tion of site-specifically 13C-enriched acetates and phenylalanines with one- and two-dimensional solid-state 13C NMR spectroscopic methods to monitor the developing suberin polymer. Exogenous acetate is found to be incorporated preferentially at the carboxyl end of the aliphatic carbon chains, suggesting addition during the later elongation steps of fatty acid synthesis. Carboxyl-labeled phenylalanine precursors provide evidence for the concurrent development of phenolic esters and of monolignols typical of lignin. Experiments with ring-labeled phenylalanine precursors demonstrate a predominance of sinapyl and guaiacyl structures among suberin’s phenolic moieties. Finally, the analysis of spin-exchange (solid-state NOESY) NMR experiments in ring-labeled suberin indicates distances of no more than 0.5 nm between pairs of phenolic and oxymethine carbons, which are attributed to the aromatic-aliphatic polyester and the cell wall polysaccharide matrix, respectively. These results offer direct and detailed molecular information regarding the insoluble intermediates of suberin biosynthesis, indicate probable covalent linkages between moieties of its polyester and polysaccharide domains, and yield a clearer overall picture of this agriculturally important protective material.
    [Show full text]
  • Changes in the Plasmodesma Structure and Permeability at the Bundle Sheath and Mesophyll Interface During the Maize C4 Leaf Development
    bioRxiv preprint doi: https://doi.org/10.1101/2020.09.30.320283; this version posted October 1, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Title: Changes in the plasmodesma structure and permeability at the bundle sheath and mesophyll interface during the maize C4 leaf development. Peng Gao1, Baijuan Du2, Pinghua Li2, and Byung-Ho Kang1* 1State Key Laboratory of Agrobiotechnology, Center for Cell and Developmental Biology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China 2State Key Laboratory of Crop Biology, College of Agronomic Sciences, Shandong Agricultural University, Tai’an 271018, China *Author for correspondence: Byung-Ho Kang ([email protected], 852-3943-6101) Key Words: C4 photosynthesis, plasmodesmata, maize, Kranz anatomy, dimorphic chloroplast, suberin Author contributions: GP and BHK: Planned and designed the research. GP: Performed microscopy imaging, immunolocalization, and qRT-PCR. BD and PL: Maintained maize mutant lines, carried out transcriptomic data analysis and gene expression correlation test. GP, BD, PL, and BHK: Interpreted the data. GP and BHK: Wrote the manuscript. bioRxiv preprint doi: https://doi.org/10.1101/2020.09.30.320283; this version posted October 1, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Plasmodesmata are intercellular channels that facilitate molecular diffusion betWeen neighboring plant cells. The development and functions of plasmodesmata are controlled by multiple intra- and intercellular signaling pathways. Plasmodesmata are critical for dual-cell C4 photosynthesis in maize because plasmodesmata at the mesophyll and bundle sheath interface mediate exchange of CO2-carrying organic acids.
    [Show full text]
  • Suberin Biosynthesis and Deposition in the Wound-Healing Potato (Solanum Tuberosum L.) Tuber Model
    Western University Scholarship@Western Electronic Thesis and Dissertation Repository 12-4-2018 2:30 PM Suberin Biosynthesis and Deposition in the Wound-Healing Potato (Solanum tuberosum L.) Tuber Model Kathlyn Natalie Woolfson The University of Western Ontario Supervisor Bernards, Mark A. The University of Western Ontario Graduate Program in Biology A thesis submitted in partial fulfillment of the equirr ements for the degree in Doctor of Philosophy © Kathlyn Natalie Woolfson 2018 Follow this and additional works at: https://ir.lib.uwo.ca/etd Part of the Plant Biology Commons Recommended Citation Woolfson, Kathlyn Natalie, "Suberin Biosynthesis and Deposition in the Wound-Healing Potato (Solanum tuberosum L.) Tuber Model" (2018). Electronic Thesis and Dissertation Repository. 5935. https://ir.lib.uwo.ca/etd/5935 This Dissertation/Thesis is brought to you for free and open access by Scholarship@Western. It has been accepted for inclusion in Electronic Thesis and Dissertation Repository by an authorized administrator of Scholarship@Western. For more information, please contact [email protected]. Abstract Suberin is a heteropolymer comprising a cell wall-bound poly(phenolic) domain (SPPD) covalently linked to a poly(aliphatic) domain (SPAD) that is deposited between the cell wall and plasma membrane. Potato tuber skin contains suberin to protect against water loss and microbial infection. Wounding triggers suberin biosynthesis in usually non- suberized tuber parenchyma, providing a model system to study suberin production. Spatial and temporal coordination of SPPD and SPAD-related metabolism are required for suberization, as the former is produced soon after wounding, and the latter is synthesized later into wound-healing. Many steps involved in suberin biosynthesis remain uncharacterized, and the mechanism(s) that regulate and coordinate SPPD and SPAD production and assembly are not understood.
    [Show full text]
  • Suberin Biosynthesis in O. Sativa: Characterisation of a Cytochrome P450 Monooxygenase
    Suberin biosynthesis in O. sativa: characterisation of a cytochrome P450 monooxygenase Dissertation zur Erlangung des Doktorgrades (Dr. rer. nat.) der Mathematisch-Naturwissenschaftlichen Fakultät der Rheinischen Friedrich-Wilhelms-Universität Bonn vorgelegt von Friedrich Felix Maria Waßmann aus Berlin Bonn, April 2014 Angefertigt mit Genehmigung der Mathematisch-Naturwissenschaftlichen Fakultät der Rheinischen Friedrich-Wilhelms-Universität Bonn. 1. Gutachter: Prof. Dr. Lukas Schreiber 2. Gutachter: Dr. Rochus Franke Tag der Promotion: 28.07.2014 Erscheinungsjahr: 2015 Contents List of abbreviationsIV 1 Introduction1 1.1 Adaptations of the apoplast to terrestrial life...................1 1.1.1 Aromatic and aliphatic polymers in vascular plants...........2 1.2 Structures of the root apoplast............................3 1.3 The lipid polyester suberin..............................5 1.3.1 Suberin biosynthetic pathways.......................6 1.3.2 Cytochrome P450...............................9 1.4 Aims of this work.................................... 10 2 Materials and methods 11 2.1 Materials......................................... 11 2.1.1 Chemicals.................................... 11 2.1.2 Media and solutions.............................. 12 2.1.3 Software..................................... 14 2.1.4 In silico tools and databases......................... 15 2.2 Plants........................................... 16 2.2.1 Genotypes.................................... 16 2.2.2 Cultivation and propagation of O. sativa .................
    [Show full text]
  • Suberin: a Promising Renewable Resource for Novel Macromolecular Materials
    ARTICLE IN PRESS Prog. Polym. Sci. 31 (2006) 878–892 www.elsevier.com/locate/ppolysci Suberin: A promising renewable resource for novel macromolecular materials Alessandro GandiniÃ, Carlos Pascoal Neto, Armando J.D. Silvestre CICECO and Department of Chemistry, University of Aveiro, 3810-193 Aveiro, Portugal Received 20 February 2006; received in revised form 17 July 2006; accepted 25 July 2006 Abstract Suberin, an aliphatic-aromatic cross-linked natural polymer present in the outer tissues of numerous vegetable species, is discussed in terms of (i) its occurrence, particularly where it dominates the bark composition of some trees, (ii) its macromolecular structure and positioning within the cell wall, (iii) its controlled chemical splicing (depolymerization through ester cleavage), (iv) the qualitative and quantitative composition of the ensuing monomeric fragments, and (v) the exploitation of this mixture of monomers in macromolecular science, both as a possible functional additive and as a source of novel materials. The presence of terminal carboxylic and hydroxy groups and of side hydroxy and epoxy moieties on the long chains of suberin ‘‘monomers’’ makes them particularly suited as building blocks for polymers with original architectures and interesting properties. r 2006 Elsevier Ltd. All rights reserved. Keywords: Suberin; Cork; Long-chain aliphatic compounds; Hydroxyacids; Dicarboxylic acids; Polyurethanes Contents 1. Introduction . 879 2. Natural occurrence . 879 3. Macromolecular structure. 881 4. Monomer composition through ester cleavage . 882 4.1. Depolymerization methods . 882 4.2. Monomer composition of suberin. 882 5. Physical properties of depolymerized suberin . 886 6. Application in macromolecular materials . 888 6.1. Dep-suberin as a functional additive . 889 6.2.
    [Show full text]
  • Lignin Phenols and Cutin- and Suberin-Derived Aliphatic Monomers As Biomarkers for Stand History, SOM Source, and Turnover
    Lignin phenols and cutin- and suberin-derived aliphatic monomers as biomarkers for stand history, SOM source, and turnover Sandra Spielvogel , Jörg Prietzel and Ingrid Kögel-Knabner Lehrstuhl für Bodenkunde, Technische Universität München, 85350 Freising, Germany, Email [email protected] Abstract Each tree species has a unique chemical composition, and also various tree tissues differ in their chemistry. Analysis of lignin phenols and cutin- and suberin-derived aliphatic monomers was employed to investigate wheter their composition can be traced back after decay and transformation into soil organic matter (SOM) to study SOM source, degradation, and stand history. The composition of bound lipids and lignin compounds in leaves/needles and root material of different tree species and of grasses was analyzed using copper (II) oxide (CuO) oxidation, saponification and subsequent analysis by gas chromatography/mass spectrometry (GC/ MS). The aim was to examine the applicability of these compounds in soils and different density and particle size fractions as biomarkers for the respective tree species and the grass. In contrast to lignin, aliphatic molecules derived from suberins and cutins were preferentially preserved in horizons and soil fractions with mean residence times > 250 years. The pattern of cutin and suberin monomers in the soils and fractions changed with increasing 14 C age, but alteration of these aliphatic macromolecules resulted in less degradable structures which are still indicative for the respective plant species. Key Words Saponification, CuO oxidation, lipids, forest trees, gas chromatography/mass spectrometry. Introduction The composition of lignin components is different for angiosperm, gymnosperm and grass lignin. Leaf cutins and suberin found in barks and roots of different plants are known to exhibit plant specific chemical compositions (Goñi and Hedges 1990).
    [Show full text]
  • Suberin: the Biopolyester at the Frontier of Plants
    REVIEW published: 30 October 2015 doi: 10.3389/fchem.2015.00062 Suberin: the biopolyester at the frontier of plants José Graça * Centro de Estudos Florestais, Instituto Superior de Agronomia, Universidade de Lisboa, Lisboa, Portugal Suberin is a lipophilic macromolecule found in specialized plant cell walls, wherever insulation or protection toward the surroundings is needed. Suberized cells form the periderm, the tissue that envelops secondary stems as part of the bark, and develop as the sealing tissue after wounding or leaf abscission. Suberin is a complex polyester built from poly-functional long-chain fatty acids (suberin acids) and glycerol. The suberin acids composition of a number of plant tissues and species is now established, but how the polyester macromolecule is assembled within the suberized cell walls is not known. In the last years contributions from several areas have however significantly enriched our understanding of suberin. The primary structure of the polyester, i.e., how the suberin acids and glycerol are sequentially linked was revealed, together with the stereochemistry of the mid-chain functional groups some suberin acids have; solid- state NMR studies showed the presence of methylene chains spatially separated and with different molecular mobility; biophysical studies showed the membrane behavior of suberin acids derivatives, allowing new insights on structure-properties relationships; Edited by: and a number of candidate genes were conclusively related to suberin biosynthesis. The José Alejandro Heredia-Guerrero, comprehension of suberin as a macromolecule will be essential to understand its vital Fondazione Istituto Italiano di Tecnologia, Italy protective roles in plants and how they will deal with eventual environmental changes.
    [Show full text]
  • Improved De Novo Chromosome‐Level Genome Assembly of the Vulnerable
    Received: 11 May 2020 | Revised: 15 March 2021 | Accepted: 29 March 2021 DOI: 10.1111/1755-0998.13394 RESOURCE ARTICLE Improved de novo chromosome- level genome assembly of the vulnerable walnut tree Juglans mandshurica reveals gene family evolution and possible genome basis of resistance to lesion nematode Feng Yan1 | Rui- Min Xi1 | Rui- Xue She1 | Peng- Peng Chen1 | Yu- Jie Yan1 | Ge Yang1 | Meng Dang1 | Ming Yue2 | Dong Pei3 | Keith Woeste4 | Peng Zhao1 1Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry Abstract of Education, College of Life Sciences, Manchurian walnut (Juglans mandshurica Maxim.) is a synonym of J. cathayensis, a dip- Northwest University, Xi’an, China 2Xi’an Botanical Garden of Shaanxi loid, vulnerable, temperate deciduous tree valued for its wood and nut. It is also valued Province, Xi’an, China as a rootstock for Juglans regia because of its reported tolerance of lesion nematode. 3 State Key Laboratory of Tree Genetics Reference genomes are available for several Juglans species, our goal was to produce and Breeding, Key Laboratory of Tree Breeding and Cultivation of the State a de novo, chromosome-level assembly of the J. mandshurica genome. Here, we re- Forestry and Grassland Administration, ported an improved assembly of J. mandshurica with a contig N50 size of 6.49 Mb Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China and a scaffold N50 size of 36.1 Mb. The total genome size was 548 Mb encoding 4Department of Forestry and Natural 29,032 protein coding genes which were annotated. The collinearity analysis showed Resources, USDA Forest Service that J.
    [Show full text]