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Infections of Cats with Blood Mycoplasmas in Various Contexts
ACTA VET. BRNO 2021, 90: 211–219; https://doi.org/10.2754/avb202190020211 Infections of cats with blood mycoplasmas in various contexts Dana Lobová1, Jarmila Konvalinová2, Iveta Bedáňová2, Zita Filipejová3, Dobromila Molinková1 University of Veterinary Sciences Brno, 1Faculty of Veterinary Medicine, Department of Infectious Diseases and Microbiology, 2Faculty of Veterinary Hygiene and Ecology, Department of Animal Protection, Welfare and Ethology, 3Faculty of Veterinary Medicine, Small Animal Clinic, Brno, Czech Republic Received April 1, 2020 Accepted May 26, 2021 Abstract Haemotropic microorganisms are the most common bacteria that infect erythrocytes and are associated with anaemia of varying severity. The aim of this study was to focus on the occurrence of Mycoplasma haemofelis, Mycoplasma haemominutum, and Mycoplasma turicensis in cats. We followed infected individuals’ breeding conditions, age, sex, basic haematological indices, and co-infection with one of the feline retroviruses. A total of 73 cats were investigated. Haemoplasmas were detected by PCR and verified by sequencing. Haematology examination was performed focusing on the number of erythrocytes, haemoglobin concentrations and haematocrit. A subset of 40 cat blood samples was examined by a rapid immunochromatography test to detect retroviruses. The following was found in our study group: M. haemofelis in 12.3% of individuals, M. haemominutum in 35.6% of individuals and M. turicensis in 17.8% of individuals. A highly significant difference was found between positive evidence of blood mycoplasmas in cats living only at home (15%) and in cats with access to the outside (69.8%). There was also a highly significant difference in the incidence of mycoplasma in cats over 3 years of age compared to 1–3 years of age and up to 1 year of age. -
Genome Published Outside of SIGS, January – June 2011 Methylovorus Sp
Standards in Genomic Sciences (2011) 4:402-417 DOI:10.4056/sigs.2044675 Genome sequences published outside of Standards in Genomic Sciences, January – June 2011 Oranmiyan W. Nelson1 and George M. Garrity1 1Editorial Office, Standards in Genomic Sciences and Department of Microbiology, Michigan State University, East Lansing, MI, USA The purpose of this table is to provide the community with a citable record of publications of on- going genome sequencing projects that have led to a publication in the scientific literature. While our goal is to make the list complete, there is no guarantee that we may have omitted one or more publications appearing in this time frame. Readers and authors who wish to have publica- tions added to this subsequent versions of this list are invited to provide the bibliometric data for such references to the SIGS editorial office. Phylum Crenarchaeota “Metallosphaera cuprina” Ar-4, sequence accession CP002656 [1] Thermoproteus uzoniensis 768-20, sequence accession CP002590 [2] “Vulcanisaeta moutnovskia” 768-28, sequence accession CP002529 [3] Phylum Euryarchaeota Methanosaeta concilii, sequence accession CP002565 (chromosome), CP002566 (plasmid) [4] Pyrococcus sp. NA2, sequence accession CP002670 [5] Thermococcus barophilus MP, sequence accession CP002372 (chromosome) and CP002373 plasmid) [6] Phylum Chloroflexi Oscillochloris trichoides DG-6, sequence accession ADVR00000000 [7] Phylum Proteobacteria Achromobacter xylosoxidans A8, sequence accession CP002287 (chromosome), CP002288 (plasmid pA81), and CP002289 -
Molecular Detection of Urogenital Mollicutes in Patients with Invasive Malignant Prostate Tumor Osama Mohammed Saed Abdul-Wahab1, Mishari H
Abdul-Wahab et al. Infectious Agents and Cancer (2021) 16:6 https://doi.org/10.1186/s13027-021-00344-9 RESEARCH ARTICLE Open Access Molecular detection of urogenital mollicutes in patients with invasive malignant prostate tumor Osama Mohammed Saed Abdul-Wahab1, Mishari H. Al-Shyarba2, Boutheina Ben Abdelmoumen Mardassi3, Nessrine Sassi3, Majed Saad Shaya Al Fayi4, Hassan Otifi5, Abdullah Hassan Al Murea6, Béhija Mlik3 and Elhem Yacoub3* Abstract Background: The etiology of prostate cancer (PCa) is multiple and complex. Among the causes recently cited are chronic infections engendered by microorganisms that often go unnoticed. A typical illustration of such a case is infection due to mollicutes bacteria. Generally known by their lurking nature, urogenital mollicutes are the most incriminated in PCa. This study was thus carried out in an attempt to establish the presence of these mollicutes by PCR in biopsies of confirmed PCa patients and to evaluate their prevalence. Methods: A total of 105 Formalin-Fixed Paraffin-Embedded prostate tissues collected from 50 patients suffering from PCa and 55 with benign prostate hyperplasia were subjected to PCR amplification targeting species-specific genes of 5 urogenital mollicutes species, Mycoplasma genitalium, M. hominis, M. fermentans, Ureaplasma parvum, and U. urealyticum. PCR products were then sequenced to confirm species identification. Results significance was statistically assessed using Chi-square and Odds ratio tests. Results: PCR amplification showed no positive results for M. genitalium, M. hominis, and M. fermentans in all tested patients. Strikingly, Ureaplasma spp. were detected among 30% (15/50) of PCa patients. Nucleotide sequencing further confirmed the identified ureaplasma species, which were distributed as follows: 7 individuals with only U. -
The Phylogenetic Composition and Structure of Soil Microbial Communities Shifts in Response to Elevated Carbon Dioxide
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by University of Minnesota Digital Conservancy The ISME Journal (2012) 6, 259–272 & 2012 International Society for Microbial Ecology All rights reserved 1751-7362/12 www.nature.com/ismej ORIGINAL ARTICLE The phylogenetic composition and structure of soil microbial communities shifts in response to elevated carbon dioxide Zhili He1, Yvette Piceno2, Ye Deng1, Meiying Xu1,3, Zhenmei Lu1,4, Todd DeSantis2, Gary Andersen2, Sarah E Hobbie5, Peter B Reich6 and Jizhong Zhou1,2 1Institute for Environmental Genomics, Department of Botany and Microbiology, University of Oklahoma, Norman, OK, USA; 2Ecology Department, Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; 3Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology, Guangzhou, China; 4College of Life Sciences, Zhejiang University, Hangzhou, China; 5Department of Ecology, Evolution, and Behavior, St Paul, MN, USA and 6Department of Forest Resources, University of Minnesota, St Paul, MN, USA One of the major factors associated with global change is the ever-increasing concentration of atmospheric CO2. Although the stimulating effects of elevated CO2 (eCO2) on plant growth and primary productivity have been established, its impacts on the diversity and function of soil microbial communities are poorly understood. In this study, phylogenetic microarrays (PhyloChip) were used to comprehensively survey the richness, composition and structure of soil microbial communities in a grassland experiment subjected to two CO2 conditions (ambient, 368 p.p.m., versus elevated, 560 p.p.m.) for 10 years. The richness based on the detected number of operational taxonomic units (OTUs) significantly decreased under eCO2. -
Metabolic Network Percolation Quantifies Biosynthetic Capabilities
RESEARCH ARTICLE Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome David B Bernstein1,2, Floyd E Dewhirst3,4, Daniel Segre` 1,2,5,6,7* 1Department of Biomedical Engineering, Boston University, Boston, United States; 2Biological Design Center, Boston University, Boston, United States; 3The Forsyth Institute, Cambridge, United States; 4Harvard School of Dental Medicine, Boston, United States; 5Bioinformatics Program, Boston University, Boston, United States; 6Department of Biology, Boston University, Boston, United States; 7Department of Physics, Boston University, Boston, United States Abstract The biosynthetic capabilities of microbes underlie their growth and interactions, playing a prominent role in microbial community structure. For large, diverse microbial communities, prediction of these capabilities is limited by uncertainty about metabolic functions and environmental conditions. To address this challenge, we propose a probabilistic method, inspired by percolation theory, to computationally quantify how robustly a genome-derived metabolic network produces a given set of metabolites under an ensemble of variable environments. We used this method to compile an atlas of predicted biosynthetic capabilities for 97 metabolites across 456 human oral microbes. This atlas captures taxonomically-related trends in biomass composition, and makes it possible to estimate inter-microbial metabolic distances that correlate with microbial co-occurrences. We also found a distinct cluster of fastidious/uncultivated taxa, including several Saccharibacteria (TM7) species, characterized by their abundant metabolic deficiencies. By embracing uncertainty, our approach can be broadly applied to understanding metabolic interactions in complex microbial ecosystems. *For correspondence: DOI: https://doi.org/10.7554/eLife.39733.001 [email protected] Competing interests: The authors declare that no Introduction competing interests exist. -
Lists of Names of Prokaryotic Candidatus Taxa
NOTIFICATION LIST: CANDIDATUS LIST NO. 1 Oren et al., Int. J. Syst. Evol. Microbiol. DOI 10.1099/ijsem.0.003789 Lists of names of prokaryotic Candidatus taxa Aharon Oren1,*, George M. Garrity2,3, Charles T. Parker3, Maria Chuvochina4 and Martha E. Trujillo5 Abstract We here present annotated lists of names of Candidatus taxa of prokaryotes with ranks between subspecies and class, pro- posed between the mid- 1990s, when the provisional status of Candidatus taxa was first established, and the end of 2018. Where necessary, corrected names are proposed that comply with the current provisions of the International Code of Nomenclature of Prokaryotes and its Orthography appendix. These lists, as well as updated lists of newly published names of Candidatus taxa with additions and corrections to the current lists to be published periodically in the International Journal of Systematic and Evo- lutionary Microbiology, may serve as the basis for the valid publication of the Candidatus names if and when the current propos- als to expand the type material for naming of prokaryotes to also include gene sequences of yet-uncultivated taxa is accepted by the International Committee on Systematics of Prokaryotes. Introduction of the category called Candidatus was first pro- morphology, basis of assignment as Candidatus, habitat, posed by Murray and Schleifer in 1994 [1]. The provisional metabolism and more. However, no such lists have yet been status Candidatus was intended for putative taxa of any rank published in the journal. that could not be described in sufficient details to warrant Currently, the nomenclature of Candidatus taxa is not covered establishment of a novel taxon, usually because of the absence by the rules of the Prokaryotic Code. -
Comprehensive Analysis of Risk Factors for Periodontitis Focusing on the Saliva Microbiome and Polymorphism
International Journal of Environmental Research and Public Health Article Comprehensive Analysis of Risk Factors for Periodontitis Focusing on the Saliva Microbiome and Polymorphism Naoki Toyama 1,* , Daisuke Ekuni 1 , Daisuke Matsui 2, Teruhide Koyama 2 , Masahiro Nakatochi 3, Yukihide Momozawa 4, Michiaki Kubo 4 and Manabu Morita 1 1 Department of Preventive Dentistry, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, 2-5-1 Shikata-cho, Kita-ku, Okayama 700-8558, Japan; [email protected] (D.E.); [email protected] (M.M.) 2 Department of Epidemiology for Community Health and Medicine, Kyoto Prefectural University of Medicine, 465 Kajii-cho, Kamigyo-ku, Kyoto 602-8566, Japan; [email protected] (D.M.); [email protected] (T.K.) 3 Public Health Informatics Unit, Department of Integrated Health Sciences, Nagoya University Graduate School of Medicine, Nagoya 461-8673, Japan; [email protected] 4 Laboratory for Genotyping Development, RIKEN Center for Integrative Medical Sciences, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama City 230-0045, Japan; [email protected] (Y.M.); [email protected] (M.K.) * Correspondence: [email protected]; Tel.: +81-86-235-6712 Abstract: Few studies have exhaustively assessed relationships among polymorphisms, the micro- biome, and periodontitis. The objective of the present study was to assess associations simultaneously among polymorphisms, the microbiome, and periodontitis. We used propensity score matching with a 1:1 ratio to select subjects, and then 22 individuals (mean age ± standard deviation, 60.7 ± 9.9 years) Citation: Toyama, N.; Ekuni, D.; were analyzed. -
Genome Diversity of Spore-Forming Firmicutes MICHAEL Y
Genome Diversity of Spore-Forming Firmicutes MICHAEL Y. GALPERIN National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894 ABSTRACT Formation of heat-resistant endospores is a specific Vibrio subtilis (and also Vibrio bacillus), Ferdinand Cohn property of the members of the phylum Firmicutes (low-G+C assigned it to the genus Bacillus and family Bacillaceae, Gram-positive bacteria). It is found in representatives of four specifically noting the existence of heat-sensitive vegeta- different classes of Firmicutes, Bacilli, Clostridia, Erysipelotrichia, tive cells and heat-resistant endospores (see reference 1). and Negativicutes, which all encode similar sets of core sporulation fi proteins. Each of these classes also includes non-spore-forming Soon after that, Robert Koch identi ed Bacillus anthracis organisms that sometimes belong to the same genus or even as the causative agent of anthrax in cattle and the species as their spore-forming relatives. This chapter reviews the endospores as a means of the propagation of this orga- diversity of the members of phylum Firmicutes, its current taxon- nism among its hosts. In subsequent studies, the ability to omy, and the status of genome-sequencing projects for various form endospores, the specific purple staining by crystal subgroups within the phylum. It also discusses the evolution of the violet-iodine (Gram-positive staining, reflecting the pres- Firmicutes from their apparently spore-forming common ancestor ence of a thick peptidoglycan layer and the absence of and the independent loss of sporulation genes in several different lineages (staphylococci, streptococci, listeria, lactobacilli, an outer membrane), and the relatively low (typically ruminococci) in the course of their adaptation to the saprophytic less than 50%) molar fraction of guanine and cytosine lifestyle in a nutrient-rich environment. -
Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices
Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices Jenna Morgan Lang1,2, Aaron E. Darling1, Jonathan A. Eisen1,2* 1 Department of Medical Microbiology and Immunology and Department of Evolution and Ecology, University of California Davis, Davis, California, United States of America, 2 Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America Abstract Over 3000 microbial (bacterial and archaeal) genomes have been made publically available to date, providing an unprecedented opportunity to examine evolutionary genomic trends and offering valuable reference data for a variety of other studies such as metagenomics. The utility of these genome sequences is greatly enhanced when we have an understanding of how they are phylogenetically related to each other. Therefore, we here describe our efforts to reconstruct the phylogeny of all available bacterial and archaeal genomes. We identified 24, single-copy, ubiquitous genes suitable for this phylogenetic analysis. We used two approaches to combine the data for the 24 genes. First, we concatenated alignments of all genes into a single alignment from which a Maximum Likelihood (ML) tree was inferred using RAxML. Second, we used a relatively new approach to combining gene data, Bayesian Concordance Analysis (BCA), as implemented in the BUCKy software, in which the results of 24 single-gene phylogenetic analyses are used to generate a ‘‘primary concordance’’ tree. A comparison of the concatenated ML tree and the primary concordance (BUCKy) tree reveals that the two approaches give similar results, relative to a phylogenetic tree inferred from the 16S rRNA gene. After comparing the results and the methods used, we conclude that the current best approach for generating a single phylogenetic tree, suitable for use as a reference phylogeny for comparative analyses, is to perform a maximum likelihood analysis of a concatenated alignment of conserved, single-copy genes. -
Vertical Transmission of Mycoplasma Haemolamae in Alpacas (Vicugna Pacos)
Vertical transmission of Mycoplasma haemolamae in alpacas (Vicugna pacos) THESIS Presented in Partial Fulfillment of the Requirements for the Degree Master of Science in the Graduate School of The Ohio State University By Rebecca Lynne Pentecost, D.V.M, B.S. Graduate Program in Comparative and Veterinary Medicine The Ohio State University 2012 Thesis Committee: Jeffrey Lakritz, Advisor Antoinette E. Marsh Andrew J. Niehaus Joshua Daniels Paivi Rajala-Schultz Copyright by Rebecca Lynne Pentecost 2012 Abstract Mycoplasma haemolamae is a parasite with tropism for the red blood cells of alpacas, llamas, and guanacos. Transmission of the parasite likely occurs via an insect vector although the vector has not been elucidated to date. Transmission via blood transfusion has been demonstrated experimentally. In utero infection has been suggested and later demonstrated in a limited number of cases (n≤5). The purpose of this study was to 1) determine the frequency of vertical transmission of Mycoplasma haemolamae from dam to cria; 2) determine whether colostral transmission of M. haemolamae occurs; and 3) provide preliminary data on colostral M. haemolamae specific antibody from pregnant alpacas on a farm with known prevalence of infection. Mycoplasma haemolamae specific PCR was performed on blood and colostrum from pregnant alpacas and their cria (n=52 pairs). Indirect fluorescent antibody testing was performed on a subset (n=43) of these colostrum samples. Total immunoglobulin concentrations of colostrum and cria sera and M. haemolamae specific IgG (prior to and after ingesting colostrum) were determined by turbidometric immunoassay and indirect fluorescence antibody testing, respectively. Sixteen of 52 dams (30.7%) pre-partum and one of 52 cria post-partum (1.9%; prior to ingestion of colostrum) were PCR positive for M. -
Feline Mycoplasma Molecular Detection Kit Transmission Can Occur Through Arthropod Vectors Such Cat
organisms. The hemolytic anemia caused by M. haemofelis is usually regenerative in nature unless this response is suppressed by an underlying disease such as Feline Leukemia Virus infection. Parasitemia is episodic and is directly coupled with decreased hematocrit levels at the time of increased parasitic load. Because of the cyclic parasitemia, organisms may be numerous, rare or undetectable in a given blood sample. Feline Mycoplasma Molecular Detection Kit Transmission can occur through arthropod vectors such Cat. No.30FMH116/30FMH148 as lice, fleas, ticks, and mosquitoes as well as by transfer of infected blood (blood transfusions or use of contaminated For in vitro veterinarian diagnostic use only needles or surgical instruments). Vertical infection and User Manual direct transmission associated with aggressive behavior between cats have been reported. Most cats infected INTENDED USE with M. haemofelis become asymptomatic carriers and redevelop milder versions of the disease when under stress2. PCRun® Feline Mycoplasma Molecular Detection Kit is intended for detection of Mycoplasma haemofelis in DNA isolated from DIAGNOSIS feline whole blood. The kit should be used for detection of acute infections. It contains all the disposable components In the acutely sick feline, macrocytic and normochromic required for performing an easy and accurate test. regenerative anemia are most common. Diagnostic symptoms include pale mucous membranes, splenomegaly, lethargy, anorexia, depression, weight loss and weakness. Hematocrit PRINCIPLE values in cats presenting with clinical signs of illness are often 50% of the normal. Fever occurs in some acutely infected cats PCRun® is a molecular assay based on isothermal amplification and may be intermittent in chronically infected individuals. -
Effectiveness of a 10% Imidacloprid/4.5% Flumethrin Polymer Matrix Collar in Reducing the Risk of Bartonella Spp
Greco et al. Parasites & Vectors (2019) 12:69 https://doi.org/10.1186/s13071-018-3257-y RESEARCH Open Access Effectiveness of a 10% imidacloprid/4.5% flumethrin polymer matrix collar in reducing the risk of Bartonella spp. infection in privately owned cats Grazia Greco1* , Emanuele Brianti2, Canio Buonavoglia1, Grazia Carelli1, Matthias Pollmeier3, Bettina Schunack3, Giulia Dowgier1,4, Gioia Capelli5, Filipe Dantas-Torres1,6 and Domenico Otranto1 Abstract Background: Bartonella henselae, Bartonella clarridgeiae and the rare Bartonella koehlerae are zoonotic pathogens, with cats being regarded as the main reservoir hosts. The spread of the infection among cats occurs mainly via fleas and specific preventive measures need to be implemented. The effectiveness of a 10% imidacloprid/4.5% flumethrin polymer matrix collar (Seresto®, Bayer Animal Health), registered to prevent flea and tick infestations, in reducing the risk of Bartonella spp. infection in privately owned cats, was assessed in a prospective longitudinal study. Methods: In March-May 2015 [Day 0 (D0)], 204 privately-owned cats from the Aeolian Islands (Sicily) were collared (G1, n =104)orleftascontrols(G2,n = 100). The bacteraemia of Bartonella spp. was assessed at enrolment (D0) and study closure (D360) by PCR and DNA sequencing both prior to and after an enrichment step, using Bartonella alpha proteobacteria growth medium (BAPGM). Results: A total of 152 cats completed the study with 3 in G1 and 10 in G2 being positive for Bartonella spp. Bartonella henselae genotype I ZF1 (1.35%) and genotype II Fizz/Cal-1 (6.76%) as well as B. clarridgeiae (5.41%) were detected in cats of G2.