Mechanisms of Formation of Nitrogen-Containing Polycyclic
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A Photoionization Reflectron Time‐Of‐Flight Mass Spectrometric
Articles ChemPhysChem doi.org/10.1002/cphc.202100064 A Photoionization Reflectron Time-of-Flight Mass Spectrometric Study on the Detection of Ethynamine (HCCNH2) and 2H-Azirine (c-H2CCHN) Andrew M. Turner,[a, b] Sankhabrata Chandra,[a, b] Ryan C. Fortenberry,*[c] and Ralf I. Kaiser*[a, b] Ices of acetylene (C2H2) and ammonia (NH3) were irradiated with 9.80 eV, and 10.49 eV were utilized to discriminate isomers energetic electrons to simulate interstellar ices processed by based on their known ionization energies. Results indicate the galactic cosmic rays in order to investigate the formation of formation of ethynamine (HCCNH2) and 2H-azirine (c-H2CCHN) C2H3N isomers. Supported by quantum chemical calculations, in the irradiated C2H2:NH3 ices, and the energetics of their experiments detected product molecules as they sublime from formation mechanisms are discussed. These findings suggest the ices using photoionization reflectron time-of-flight mass that these two isomers can form in interstellar ices and, upon spectrometry (PI-ReTOF-MS). Isotopically-labeled ices confirmed sublimation during the hot core phase, could be detected using the C2H3N assignments while photon energies of 8.81 eV, radio astronomy. 1. Introduction acetonitrile (CH3CN; 1) and methyl isocyanide (CH3NC; 2) ‘isomer doublet’ (Figure 2) – the methyl-substituted counterparts of For the last decade, the elucidation of the fundamental reaction hydrogen cyanide (HCN) and hydrogen isocyanide (HNC) – has pathways leading to structural isomers – molecules with the been detected toward the star-forming region SgrB2.[4,8–9] same molecular formula, but distinct connectivities of atoms – However, none of their higher energy isomers has ever been of complex organic molecules (COMs) in the interstellar identified in any astronomical environment: 2H-azirine (c- [10–14] [15–19] medium (ISM) has received considerable interest from the NCHCH2; 3), ethynamine (HCCNH2; 4), ketenimine [1–3] [20] [21] astrochemistry and physical chemistry communities. -
Formation of Fulvene in the Reaction of C2H with 1,3-Butadiene
UC Berkeley UC Berkeley Previously Published Works Title Formation of fulvene in the reaction of C2H with 1,3-butadiene Permalink https://escholarship.org/uc/item/34x2s372 Authors Lockyear, JF Fournier, M Sims, IR et al. Publication Date 2015-02-15 DOI 10.1016/j.ijms.2014.08.025 Peer reviewed eScholarship.org Powered by the California Digital Library University of California International Journal of Mass Spectrometry 378 (2015) 232–245 Contents lists available at ScienceDirect International Journal of Mass Spectrometry journal homepage: www.elsevier.com/locate/ijms Formation of fulvene in the reaction of C2H with 1,3-butadiene Jessica F. Lockyear a,1, Martin Fournier b,c, Ian R. Sims b, Jean-Claude Guillemin c, Craig A. Taatjes d, David L. Osborn d, Stephen R. Leone a,* a Departments of Chemistry and Physics, University of California at Berkeley, and Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA b Institut de Physique de Rennes, UMR CNRS-UR1 6251, Université de Rennes 1, 263 Avenue du Général Leclerc, 35042 Rennes CEDEX,France c Ecole Nationale Supérieure de Chimie de Rennes, CNRS UMR 6226, 11 Allée de Beaulieu, CS 50837, 35708 Rennes CEDEX 7, France d Combustion Research Facility, Mailstop 9055, Sandia National Laboratories, Livermore, CA 94551-0969, USA ARTICLE INFO ABSTRACT Article history: Products formed in the reaction of C2H radicals with 1,3-butadiene at 4 Torr and 298 K are probed using Received 30 May 2014 photoionization time-of-flight mass spectrometry. The reaction takes place in a slow-flow reactor, and Received in revised form 21 July 2014 products are ionized by tunable vacuum-ultraviolet light from the Advanced Light Source. -
A Chemical Kinetics Network for Lightning and Life in Planetary Atmospheres P
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by St Andrews Research Repository The Astrophysical Journal Supplement Series, 224:9 (33pp), 2016 May doi:10.3847/0067-0049/224/1/9 © 2016. The American Astronomical Society. All rights reserved. A CHEMICAL KINETICS NETWORK FOR LIGHTNING AND LIFE IN PLANETARY ATMOSPHERES P. B. Rimmer and Ch Helling School of Physics and Astronomy, University of St Andrews, St Andrews, KY16 9SS, UK; [email protected] Received 2015 June 3; accepted 2015 October 22; published 2016 May 23 ABSTRACT There are many open questions about prebiotic chemistry in both planetary and exoplanetary environments. The increasing number of known exoplanets and other ultra-cool, substellar objects has propelled the desire to detect life andprebiotic chemistry outside the solar system. We present an ion–neutral chemical network constructed from scratch, STAND2015, that treats hydrogen, nitrogen, carbon, and oxygen chemistry accurately within a temperature range between 100 and 30,000 K. Formation pathways for glycine and other organic molecules are included. The network is complete up to H6C2N2O3. STAND2015 is successfully tested against atmospheric chemistry models for HD 209458b, Jupiter, and the present-day Earth using a simple one- dimensionalphotochemistry/diffusion code. Our results for the early Earth agree with those of Kasting for CO2,H2, CO, and O2, but do not agree for water and atomic oxygen. We use the network to simulate an experiment where varied chemical initial conditions are irradiated by UV light. The result from our simulation is that more glycine is produced when more ammonia and methane is present. -
House Fly Attractants and Arrestante: Screening of Chemicals Possessing Cyanide, Thiocyanate, Or Isothiocyanate Radicals
House Fly Attractants and Arrestante: Screening of Chemicals Possessing Cyanide, Thiocyanate, or Isothiocyanate Radicals Agriculture Handbook No. 403 Agricultural Research Service UNITED STATES DEPARTMENT OF AGRICULTURE Contents Page Methods 1 Results and discussion 3 Thiocyanic acid esters 8 Straight-chain nitriles 10 Propionitrile derivatives 10 Conclusions 24 Summary 25 Literature cited 26 This publication reports research involving pesticides. It does not contain recommendations for their use, nor does it imply that the uses discussed here have been registered. All uses of pesticides must be registered by appropriate State and Federal agencies before they can be recommended. CAUTION: Pesticides can be injurious to humans, domestic animals, desirable plants, and fish or other wildlife—if they are not handled or applied properly. Use all pesticides selectively and carefully. Follow recommended practices for the disposal of surplus pesticides and pesticide containers. ¿/áepé4áaUÁí^a¡eé —' ■ -"" TMK LABIL Mention of a proprietary product in this publication does not constitute a guarantee or warranty by the U.S. Department of Agriculture over other products not mentioned. Washington, D.C. Issued July 1971 For sale by the Superintendent of Documents, U.S. Government Printing Office Washington, D.C. 20402 - Price 25 cents House Fly Attractants and Arrestants: Screening of Chemicals Possessing Cyanide, Thiocyanate, or Isothiocyanate Radicals BY M. S. MAYER, Entomology Research Division, Agricultural Research Service ^ Few chemicals possessing cyanide (-CN), thio- cyanate was slightly attractive to Musca domes- eyanate (-SCN), or isothiocyanate (~NCS) radi- tica, but it was considered to be one of the better cals have been tested as attractants for the house repellents for Phormia regina (Meigen). -
Reaction of Allyl Radical with Acetylene
石 油 学 会 誌 J. Japan Petrol. Inst., 23, (2), 133-138 (1980) 133 Reaction of Allyl Radical with Acetylene Daisuke NOHARA* and Tomoya SAKAI* The title reaction was performed at 580-740℃, employing biallyl as the source of the allyl radical. The main product of addition of allyl radical to acetylene was cyclopentadiene, and the selectivity attained was more than 90 percent of the total C5 products. Such acyclic product as 1,4-pentadiene was scarcely formed in distinct contrast with the result of the addition of allyl radical to ethylene, in which almost equal amounts of 1-pentene and cyclopentene were formed. The product distribution of the title reaction was reported, and a scheme for the product forma- tion was proposed. From the kinetic analysis, the overall activation energy of reaction for the formation of cyclopentadiene from allyl radical and acetylene was estimated. The present experiment on thermal reaction of 1. Introduction biallyl with acetylene was undertaken to examine Allyl radical has been suggested as playing the the possibility of cycloaddition of allyl radical to role of diene1) in the cyclization reaction with the triple bond. Cyclopentadiene, one of the ex- olefins to form C5-cyclic products analogous to pected C5 compounds in the present reaction, was butadiene which thermally combines with olefins formed in high selectivity, i.e., ca. 40 percent of to yield C6-cyclic compounds. In the pyrolysis all products, including the products from the thermal of ethylene2), C6-cyclic compounds were formed reaction of acetylene itself. The selectivity was mostly through the Diels-Alder reaction between formed to be as high as 60 percent, excluding the butadiene and ethylene, the butadiene being one products from the reaction of acetylene itself. -
Microhydration and the Enhanced Acidity of Free Radicals
molecules Article Microhydration and the Enhanced Acidity of Free Radicals John C. Walton EaStCHEM School of Chemistry, University of St. Andrews, St. Andrews KY16 9ST, UK; [email protected]; Tel.: +44-(0)1334-463864 Received: 31 January 2018; Accepted: 14 February 2018; Published: 14 February 2018 Abstract: Recent theoretical research employing a continuum solvent model predicted that radical centers would enhance the acidity (RED-shift) of certain proton-donor molecules. Microhydration studies employing a DFT method are reported here with the aim of establishing the effect of the solvent micro-structure on the acidity of radicals with and without RED-shifts. Microhydration cluster structures were obtained for carboxyl, carboxy-ethynyl, carboxy-methyl, and hydroperoxyl radicals. The numbers of water molecules needed to induce spontaneous ionization were determined. The hydration clusters formed primarily round the CO2 units of the carboxylate-containing radicals. Only 4 or 5 water molecules were needed to induce ionization of carboxyl and carboxy-ethynyl radicals, thus corroborating their large RED-shifts. Keywords: free radicals; acidity; DFT computations; hydration 1. Introduction A transient-free radical is necessarily reactive at the site (X) of its unpaired electron (upe). In addition, a free radical with a structure containing a proton donor group may undergo ionic dissociation to a radical anion and a proton: • • − + XH2WAH! XH2WA + H in which W is a connector or spacer group, and A is the site of the departing proton. Effectively, the free radicals in this category can function as Br'nsted acids. More than 40 years ago, Hayon and Simic drew attention to the fact that free radicals could be more acidic than parent compounds [1]. -
Molecular Excitation in the Interstellar Medium: Recent Advances In
Molecular excitation in the Interstellar Medium: recent advances in collisional, radiative and chemical processes Evelyne Roueff∗,† and François Lique∗,‡ Laboratoire Univers et Théories, Observatoire de Paris, 92190, Meudon, France, and LOMC - UMR 6294, CNRS-Université du Havre, 25 rue Philippe Lebon, BP 540, 76058, Le Havre, France E-mail: [email protected]; [email protected] Contents 1 Introduction 3 2 Collisional excitation 7 2.1 Methods . 9 2.1.1 Theory . 9 2.1.2 Potential energy surfaces . 10 2.1.3 Scattering Calculations . 13 arXiv:1310.8259v1 [physics.chem-ph] 30 Oct 2013 2.1.4 Experiments . 17 2.2 H2, CO and H2O molecules as benchmark systems . 19 2.2.1 H2 ....................................... 19 ∗To whom correspondence should be addressed †Laboratoire Univers et Théories, Observatoire de Paris, 92190, Meudon, France ‡LOMC - UMR 6294, CNRS-Université du Havre, 25 rue Philippe Lebon, BP 540, 76058, Le Havre, France 1 2.2.2 CO . 22 2.2.3 H2O...................................... 27 2.3 Other recent results . 30 2.3.1 CN / HCN / HNC . 31 2.3.2 CS / SiO / SiS / SO / SO2 .......................... 34 2.3.3 NH3 /NH................................... 38 2.3.4 O2 / OH / NO . 40 2.3.5 C2 /C2H/C3 /C4 / HC3N.......................... 41 2.3.6 Complex Organic Molecules : H2CO / HCOOCH3 / CH3OH . 45 + + + + + 2.3.7 Cations : CH / SiH / HCO /N2H / HOCO . 49 + 2.3.8 H3 ...................................... 52 − − 2.3.9 Anions : CN /C2H ............................ 52 2.4 Isotopologues . 55 3 Radiative and chemical excitation 57 3.1 Radiative effects . 57 3.2 Chemical effects . 59 3.3 Examples . -
Chemical Dynamics of Triacetylene Formation and Implications to the Synthesis of Polyynes in Titan’S Atmosphere
Chemical dynamics of triacetylene formation and implications to the synthesis of polyynes in Titan’s atmosphere X. Gua,Y.S.Kima, R. I. Kaisera,1, A. M. Mebelb, M. C. Liangc,d,e, and Y. L. Yungf aDepartment of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822; bDepartment of Chemistry and Biochemistry, Florida International University, Miami, FL 33199 ; cResearch Center for Environmental Changes, Academia Sinica, Taipei 115, Taiwan; dGraduate Institute of Astronomy, National Central University, Jhongli 320, Taiwan; eInstitute of Astronomy and Astrophysics, Academia Sinica, Taipei 10617, Taiwan; and fDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125 Edited by William Klemperer, Harvard University, Cambridge, MA, and approved August 12, 2009 (received for review January 16, 2009) For the last four decades, the role of polyynes such as diacetylene Therefore, an experimental investigation of these elementary (HCCCCH) and triacetylene (HCCCCCCH) in the chemical evolution reactions under single collision conditions is desirable (16–18). of the atmosphere of Saturn’s moon Titan has been a subject of In this article, we report the results of a crossed molecular vigorous research. These polyacetylenes are thought to serve as an beam reaction of the isotope variant of the elementary reaction 2⌺ϩ 1⌺ϩ UV radiation shield in planetary environments; thus, acting as of ethynyl radicals (C2H; X ) with diacetylene (C4H2;X g ). prebiotic ozone, and are considered as important constituents of These results are combined with electronic structure calculations the visible haze layers on Titan. However, the underlying chemical and photochemical modeling to unravel the formation and role 1⌺ϩ processes that initiate the formation and control the growth of of the organic transient molecule triacetylene (C6H2;X g )in polyynes have been the least understood to date. -
The 1.66M Spectrum of the Ethynyl Radical
The 1.66 µm Spectrum of the Ethynyl Radical, CCH Eisen C. Gross Chemistry Department, Stony Brook University, Stony Brook, NY 11794-3400 Anh. T. Le School of Molecular Sciences, Arizona State University, Tempe, AZ 85287 Gregory E. Hall Chemistry Division, Brookhaven National Laboratory, Upton, NY 11973-5000 Trevor J. Sears∗ Chemistry Department, Stony Brook University, Stony Brook, NY 11794-3400 Abstract Frequency-modulated diode laser transient absorption spectra of the ethynyl radical have been recorded at wavelengths close to 1.66 µm. The observed spectrum includes strong, regular, line patterns. The two main bands observed originate in the ground X~ 2Σ+state and its first excited bending vibrational level of 2Π symmetry. The upper states, of 2Σ+ symmetry at 6055.6 cm−1and 2Π symmetry at 6413.5 cm−1 , respectively, had not previously been observed and the data were analyzed in terms of an effective Hamiltonian representing their rotational and fine structure levels to derive parameters which can be used to calculate rotational levels up to J = 37/2 for the 2Π level and J = 29/2 for the 2Σ one. Additionally, a weaker series of lines have been assigned to absorption from the second excited bending, (020), level of 2Σ symmetry, to a previously observed state of 2Π symmetry near 6819 cm−1 . These strong absorption bands at convenient near-IR laser wavelengths will be useful for arXiv:2011.08995v1 [physics.chem-ph] 17 Nov 2020 ∗Corresponding author Email addresses: [email protected] (Eisen C. Gross), [email protected] (Anh. T. Le), [email protected] (Gregory E. -
Chemical Production Rates of Intermediate Hydrocarbons in a Methane/Air Diffusion Flame
Twenty-first Symposium(International) on Combustion/TheCombustion Institute, 1986/pp. 1057-1065 CHEMICAL PRODUCTION RATES OF INTERMEDIATE HYDROCARBONS IN A METHANE/AIR DIFFUSION FLAME J. HOUSTON MILLER Department of Chemistry George Washington University Washington, DC 20052 W. GARY MALLARD AND KERMIT C. SMYTH Center for Fire Research National Bureau of Standards Gaithersburg, MD 20899 The net production and destruction rates for acetylene, diacetylene, butadiene, and benzene have been determined from measurements of species concentration, temperature, and velocity in a methane/air diffusion flame. In addition, profile measurements of the methyl radical are used to compute profiles of hydrogen atoms. These results provide an initial evaluation of proposed models of hydrocarbon chemical growth routes in diffusion flames, and indicate that the vinyl radical plays a key role in the formation of benzene. Evidence is also presented for acetylene participation in surface growth processes on small soot particles. I. Introduction composition is not sufficient to predict the concentrations of intermediate hydrocarbons, The identification of the formation mecha- such as acetylene and benzene, and soot nism of large hydrocarbons produced during particles 17. Therefore, in this paper an analysis combustion is one of the most challenging is undertaken combining detailed species pro- problems in high temperature chemistry. De- file measurements, temperature, and convec- spite the complexity of chemical growth reac- tive velocity measurements to calculate produc- tions in flames, there have been significant tion and destruction rates for intermediate recent gains in our understanding. Extensive hydrocarbons. The experimental values for the profile measurements have led to a detailed net production/destruction rates are compared description of the chemical structure of pre- with estimated rates of chemical growth reac- mixed flames 1-13. -
Arxiv:1510.07052V1 [Astro-Ph.EP] 23 Oct 2015 99 Lae Ta.20,Adrfrne Therein)
A Chemical Kinetics Network for Lightning and Life in Planetary Atmospheres P. B. Rimmer1 and Ch Helling School of Physics and Astronomy, University of St Andrews, St Andrews, KY16 9SS, United Kingdom ABSTRACT There are many open questions about prebiotic chemistry in both planetary and exoplane- tary environments. The increasing number of known exoplanets and other ultra-cool, substellar objects has propelled the desire to detect life and prebiotic chemistry outside the solar system. We present an ion-neutral chemical network constructed from scratch, Stand2015, that treats hydrogen, nitrogen, carbon and oxygen chemistry accurately within a temperature range between 100 K and 30000 K. Formation pathways for glycine and other organic molecules are included. The network is complete up to H6C2N2O3. Stand2015 is successfully tested against atmo- spheric chemistry models for HD209458b, Jupiter and the present-day Earth using a simple 1D photochemistry/diffusion code. Our results for the early Earth agree with those of Kasting (1993) for CO2, H2, CO and O2, but do not agree for water and atomic oxygen. We use the network to simulate an experiment where varied chemical initial conditions are irradiated by UV light. The result from our simulation is that more glycine is produced when more ammonia and methane is present. Very little glycine is produced in the absence of any molecular nitrogen and oxygen. This suggests that production of glycine is inhibited if a gas is too strongly reducing. Possible applications and limitations of the chemical kinetics network are also discussed. Subject headings: astrobiology — atmospheric effects — molecular processes — planetary systems 1. Introduction The input energy source and the initial chem- istry have been varied across these different ex- The potential connection between a focused periments. -
Crossed Molecular Beams Study on the Formation of Vinylacetylene in Titan’S Atmosphere†
J. Phys. Chem. A 2009, 113, 11167–11173 11167 Crossed Molecular Beams Study on the Formation of Vinylacetylene in Titan’s Atmosphere† Fangtong Zhang, Yong Seol Kim, and Ralf I. Kaiser* Department of Chemistry, UniVersity of Hawaii at Manoa, Honolulu, Hawaii 96822 Sergey P. Krishtal and Alexander M. Mebel Department of Chemistry and Biochemistry, Florida International UniVersity, Florida 33199 ReceiVed: April 8, 2009; ReVised Manuscript ReceiVed: May 15, 2009 2 + 1 The reaction of ground-state ethynyl radicals, C2H(X Σ ), with d4-ethylene, C2D4(X Ag), was investigated at a collision energy of 20.6 ( 0.4 kJ mol-1 utilizing the crossed-beams technique. Combined with electronic structure calculations, our results elucidate that this reaction follows indirect reaction dynamics via a doublet radical complex. The reaction is initiated by a barrierless addition of the ethynyl radical to a carbon atom of the d4-ethylene molecule to form a C4HD4 intermediate. The latter is long-lived compared with its rotational period and decomposes via a tight exit transition state to form the d3-vinylacetylene product (HCCC2D3) plus a deuterium atom while conserving the ethynyl group; the center-of-mass angular distribution suggests that the deuterium atom leaves almost perpendicularly to the rotational plane of the fragmenting C4HD4 complex. The overall reaction is found to be exoergic by 94 ( 20 kJ mol-1; this value agrees nicely with a computational -1 data of 103 ( 5kJmol . This study indicates that the analogous vinylacetylene molecule (HCCC2H3) can be synthesized in a low-temperature environment such as Titan’s atmosphere via the neutral-neutral reaction of ethynyl radicals with ubiquitous ethylene.