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Big Data, Moocs, and ... (PDF) HHMI Constellation Studios for Science Education November 13-15, 2015 | HHMI Headquarters | Chevy Chase, MD Big Data, MOOCs, and Quantitative Education for Biologists Co-Chairs Pavel Pevzner, University of California- San Diego Sarah Elgin, Washington University Studio Objectives Discuss existing challenges in bioinformatics education with experts in computational biology and quantitative biology education, Evaluate best practices in teaching quantitative and computational biology, and Collaborate with scientist educators to develop instructional modules to support a biology curriculum that includes quantitative approaches. Friday | November 13 4:00 pm Arrival Registration Desk 5:30 – 6:00 pm Reception Great Hall 6:00 – 7:00 pm Dinner Dining Room 7:00 – 7:15 pm Welcome K202 David Asai, HHMI Cynthia Bauerle, HHMI Pavel Pevzner, University of California-San Diego Sarah Elgin, Washington University Alex Hartemink, Duke University 7:15 – 8:00 pm How to Maximize Interaction and Feedback During the Studio K202 Cynthia Bauerle and Sarah Simmons, HHMI 8:00 – 9:00 pm Keynote Presentation K202 "Computing + Biology = Discovery" Speakers: Ran Libeskind-Hadas, Harvey Mudd College Eliot Bush, Harvey Mudd College 9:00 – 11:00 pm Social The Pilot Saturday | November 14 7:30 – 8:15 am Breakfast Dining Room 8:30 – 10:00 am Lecture session 1 K202 Moderator: Pavel Pevzner 834a-854a “How is body fat regulated?” Laurie Heyer, Davidson College 856a-916a “How can we find mutations that cause cancer?” Ben Raphael, Brown University “How does a tumor evolve over time?” 918a-938a Russell Schwartz, Carnegie Mellon University “How fast do ribosomes move?” 940a-1000a Carl Kingsford, Carnegie Mellon University 10:05 – 10:55 am Breakout working groups Rooms: S221, (coffee available in each room) N238, N241, N140 1. “How is body fat regulated?” (S221) 2. “How can we find mutations that cause cancer?” (N238) 3. “How does a tumor evolve over time?” (N241) 4. “How fast do ribosomes move?” (N140) 11:00 am – 12:30 pm Lecture session 2 K202 Moderator: Sally Elgin 1104a-1124a “How neurons do integrals” Mark Goldman, University of California-Davis 1126a-1146a “A hitchhiker’s guide to coevolution” Ran Libeskind-Hadas, Harvey Mudd College 1148p-1208p “Predicting evolution of HIV drug resistance” Christopher Lee, University of California-Los Angeles HHMI Constellation Studios for Science Education November 13-15, 2015 | HHMI Headquarters | Chevy Chase, MD Saturday | November 14 (Cont.) 12:30 - 1:30 pm Lunch Dining Room 1:40 - 2:30 pm Breakout working groups Rooms: S221, (coffee available in each room) N238, N241 1. “How neurons do integrals” (S221) 2. “A hitchhiker’s guide to coevolution” (N238) 3. “Predicting evolution of HIV drug resistance” (N241) 2:35 – 4:05 pm Lecture session 3 K202 Moderator: Phillip Compeau 239p-259p “To be or not to be: male, female or both?” Véronique Delesalle, Gettysburg College 301p-321p “How does principal component analysis work with biological data?” Claudia Neuhauser, University of Minnesota 323p-343p “Designing vaccines to target viruses” Steven Skiena, SUNY Stonybrook “Using divide-and-conquer to construct the tree of life” 345p-405p Tandy Warnow, University of Illinois Urbana-Champaign 4:10 - 5:00 pm Breakout working groups Rooms: S221, (coffee available in each room) N238, N241, N140 1. “To be or not to be: male, female or both?” (S221) 2. “How does principal component analysis work with biological data?” (N238) 3. “Designing vaccines to target viruses” (N241) 4. “Using divide-and-conquer to construct the tree of life” (N140) 5:05 – 5:30 pm Group Photo Atrium 5:35 – 6:30 pm Break/Reception Great Hall 6:30 – 7:25 pm Dinner Dining Hall 7:30 – 8:30 pm Brainstorming Breakout session D115, D116, Discussion 1: Identifying other resources to support quantitative education (D115) North & South Discussion 2: Defining quantitative learning outcomes for undergraduate biology students (D116) Lounges Discussion 3: Adapting and implementing quantitative education resources (North Lounge) Discussion 4: TBA, South Lounge D124 & D125 8:30 – 9:30 pm Full Group Report Out and Discussion Moderator, Alex Hartemink, Duke University 8:30 – 10:30 pm Re-recording Session (6 slots available for speakers from Session 1/2/3) K202 9:30 – 11:00 pm Social The Pilot Sunday | November 15 7:30 – 8:15 am Breakfast Dining Room 8:30 – 10:00 am Lecture session 4 K202 Moderator: Alexander Hartemink 834a-854a “Compressive genomics in the next-gen world” Bonnie Berger, Massachusetts Institute of Technology 856a-916a “Searching for a sequence needle in a genome haystack” Eleazar Eskin, University of California-Los Angeles 918a-938a “How to fit 6 billion DNA nucleotides in a 10 micron nucleus” Bill Noble, Washington University “How genome assembly tracked the 2001 anthrax attacks to their source” 940a-1000a Steven Salzberg, Johns Hopkins University 10:05 – 10:55 am Breakout working groups Rooms: S221, (coffee available in each room) N238, N241, N140 1. “Compressive Genomics : Scaling faster than light” (S221) 2. “Searching for a sequence needle in a genome haystack” (N238) 3. “How to fit 6 billion DNA nucleotides in a 10 micron nucleus” (N241) 4. “How genome assembly tracked the 2001 anthrax attacks to their source” (N140) 11:00 am – 11:50 am Closing Discussion K202 Pavel Pevzner, University of California-San Diego Sarah Elgin, Washington University Alex Hartemink, Duke University 12:00 – 1:00 pm Lunch Dining Hall 1:00 – 2:30 pm Re-recording Session (6 slots available for speakers from Session 3/4 ) K202 .
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