Guide to Best Practices in Ocean Acidification Research
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BSCI440, Spring 2011, Dr. Higgins
Chapter Guides: http://virtual.yosemite.cc.ca.us/rdroual/Course%20Materials/Physiology%20101/Chapte r%20Notes/Fall%202011/chapter_5%20Fall%202011.htm “One time, we had a guy perform who was supposed to be a master of kung fu. Turns out he was a male stripper. Surprised the hell out of us all.” “If you ever get stung by an anemone off the Great Barrier Reef, I want your last thought as you die to be 'damn, Higgins told me about this shit.'” “They knew the dose for this furry meatloaf; some of you know it as a cat.” “Experience and treachery will always overcome youth and exuberance.” *holding up a shoe* “So this is urine, right?” “Isn't that great? That's almost pornographic!” - in reference to a flowchart “The next time your roommate goes to vomit, run in and check their pupils and blood pressure. It’s all for science….the next time you get the stomach flu, think of me.” Lecture 1: Multicellularity & Homeostasis Homeostasis (Chapter 1) Why multicellularity? o surface:volume problem (nutrients), greater specialization, compartmentalization, homeostasis o homeostasis – maintenance of a constant, optimal internal environment Identify 4 basic cell types in mammalian systems o neuron, muscle, epithelial (exocrine vs endocrine), connective o organ systems: endocrine, nervous, musculoskeletal, cardiovascular, respiratory, urinary (osmotic pressure, pH, & ion content), gastrointestinal (absorb & excrete), reproductive, immune, integumentary Understand concept & examples of homeostasis o by isolating internal body fluids by regulating the composition of the fluids surrounding the cells & tissues, organ systems eliminate the need for each cell to respond to changes in the external environment o system sets desired reference level, and makes adjustment via feedback Design closed loop, negative feedback system to control a physical parameter 1 o levels go beyond set point → error signal to integrating center → regulatory mechanisms activate effectors → response → change in regulated variable o stimulus → sensory system → comparator with reference → effector for output o e.g. -
The Role of Reforestation in Carbon Sequestration
New Forests (2019) 50:115–137 https://doi.org/10.1007/s11056-018-9655-3 The role of reforestation in carbon sequestration L. E. Nave1,2 · B. F. Walters3 · K. L. Hofmeister4 · C. H. Perry3 · U. Mishra5 · G. M. Domke3 · C. W. Swanston6 Received: 12 October 2017 / Accepted: 24 June 2018 / Published online: 9 July 2018 © Springer Nature B.V. 2018 Abstract In the United States (U.S.), the maintenance of forest cover is a legal mandate for federally managed forest lands. More broadly, reforestation following harvesting, recent or historic disturbances can enhance numerous carbon (C)-based ecosystem services and functions. These include production of woody biomass for forest products, and mitigation of atmos- pheric CO2 pollution and climate change by sequestering C into ecosystem pools where it can be stored for long timescales. Nonetheless, a range of assessments and analyses indicate that reforestation in the U.S. lags behind its potential, with the continuation of ecosystem services and functions at risk if reforestation is not increased. In this context, there is need for multiple independent analyses that quantify the role of reforestation in C sequestration, from ecosystems up to regional and national levels. Here, we describe the methods and report the fndings of a large-scale data synthesis aimed at four objectives: (1) estimate C storage in major ecosystem pools in forest and other land cover types; (2) quan- tify sources of variation in ecosystem C pools; (3) compare the impacts of reforestation and aforestation on C pools; (4) assess whether these results hold or diverge across ecore- gions. -
Purification and Characterization of Bromocresol Purple for Spectrophotometric Seawater Alkalinity Titrations
University of Montana ScholarWorks at University of Montana Undergraduate Theses and Professional Papers 2016 PURIFICATION AND CHARACTERIZATION OF BROMOCRESOL PURPLE FOR SPECTROPHOTOMETRIC SEAWATER ALKALINITY TITRATIONS Taymee A. Brandon The University Of Montana, [email protected] Follow this and additional works at: https://scholarworks.umt.edu/utpp Part of the Analytical Chemistry Commons, and the Environmental Chemistry Commons Let us know how access to this document benefits ou.y Recommended Citation Brandon, Taymee A., "PURIFICATION AND CHARACTERIZATION OF BROMOCRESOL PURPLE FOR SPECTROPHOTOMETRIC SEAWATER ALKALINITY TITRATIONS" (2016). Undergraduate Theses and Professional Papers. 97. https://scholarworks.umt.edu/utpp/97 This Thesis is brought to you for free and open access by ScholarWorks at University of Montana. It has been accepted for inclusion in Undergraduate Theses and Professional Papers by an authorized administrator of ScholarWorks at University of Montana. For more information, please contact [email protected]. PURIFICATION AND CHARACTERIZATION OF BROMOCRESOL PURPLE FOR SPECTROPHOTOMETRIC SEAWATER ALKALINITY TITRATIONS By TAYMEE ANN MARIE BRANDON Undergraduate Thesis presented in partial fulfillment of the requirements for the University Scholar distinction Davidson Honors College University of Montana Missoula, MT May 2016 Approved by: Dr. Michael DeGrandpre Department of Chemistry and Biochemistry ABSTRACT Brandon, Taymee, B.S., May 2016 Chemistry Purification and Characterization of Bromocresol Purple for Spectrophotometric Seawater Alkalinity Titrations Faculty Mentor: Dr. Michael DeGrandpre The topic of my research is the purification of the sulfonephthalein indicator bromocresol purple (BCP). BCP is used as an acid-base indicator in seawater alkalinity determinations. Impurities in sulfonephthalein indicator salts often result in significant errors in pH values3. -
Metal Ions in Life Sciences"
I N S T R U C T I O N S F O R A U T H O R S Contributing to "Metal Ions in Life Sciences" edited by Astrid Sigel, Helmut Sigel, and Roland K. O. Sigel published by Walter de Gruyter GmbH, Berlin, Germany www.mils-WdG.com (for previous volumes visit www.bioinorganic-chemistry.org/mils) Contents 1. GENERAL REMARKS ............................................................................................... 2 2. SUBMISSION OF THE MANUSCRIPT ................................................................. 2 3. PREPARATION OF THE MANUSCRIPT ............................................................. 3 3.1. Arrangement of the Manuscript .......................................................................... 3 3.2. Organization of the Content of the Manuscript .................................................. 3 3.3. Text .................................................................................................................... 4 3.3.1. General ................................................................................................... 4 3.3.2. Further Directions ................................................................................ 4 3.4. Citations and Reference Style ............................................................................. 4 3.5. Tables ................................................................................................................. 5 3.6. Artwork ............................................................................................................... 5 3.6.1. General -
Freshwater Fishes
WESTERN CAPE PROVINCE state oF BIODIVERSITY 2007 TABLE OF CONTENTS Chapter 1 Introduction 2 Chapter 2 Methods 17 Chapter 3 Freshwater fishes 18 Chapter 4 Amphibians 36 Chapter 5 Reptiles 55 Chapter 6 Mammals 75 Chapter 7 Avifauna 89 Chapter 8 Flora & Vegetation 112 Chapter 9 Land and Protected Areas 139 Chapter 10 Status of River Health 159 Cover page photographs by Andrew Turner (CapeNature), Roger Bills (SAIAB) & Wicus Leeuwner. ISBN 978-0-620-39289-1 SCIENTIFIC SERVICES 2 Western Cape Province State of Biodiversity 2007 CHAPTER 1 INTRODUCTION Andrew Turner [email protected] 1 “We live at a historic moment, a time in which the world’s biological diversity is being rapidly destroyed. The present geological period has more species than any other, yet the current rate of extinction of species is greater now than at any time in the past. Ecosystems and communities are being degraded and destroyed, and species are being driven to extinction. The species that persist are losing genetic variation as the number of individuals in populations shrinks, unique populations and subspecies are destroyed, and remaining populations become increasingly isolated from one another. The cause of this loss of biological diversity at all levels is the range of human activity that alters and destroys natural habitats to suit human needs.” (Primack, 2002). CapeNature launched its State of Biodiversity Programme (SoBP) to assess and monitor the state of biodiversity in the Western Cape in 1999. This programme delivered its first report in 2002 and these reports are updated every five years. The current report (2007) reports on the changes to the state of vertebrate biodiversity and land under conservation usage. -
Introduction to Co2 Chemistry in Sea Water
INTRODUCTION TO CO2 CHEMISTRY IN SEA WATER Andrew G. Dickson Scripps Institution of Oceanography, UC San Diego Mauna Loa Observatory, Hawaii Monthly Average Carbon Dioxide Concentration Data from Scripps CO Program Last updated August 2016 2 ? 410 400 390 380 370 2008; ~385 ppm 360 350 Concentration (ppm) 2 340 CO 330 1974; ~330 ppm 320 310 1960 1965 1970 1975 1980 1985 1990 1995 2000 2005 2010 2015 Year EFFECT OF ADDING CO2 TO SEA WATER 2− − CO2 + CO3 +H2O ! 2HCO3 O C O CO2 1. Dissolves in the ocean increase in decreases increases dissolved CO2 carbonate bicarbonate − HCO3 H O O also hydrogen ion concentration increases C H H 2. Reacts with water O O + H2O to form bicarbonate ion i.e., pH = –lg [H ] decreases H+ and hydrogen ion − HCO3 and saturation state of calcium carbonate decreases H+ 2− O O CO + 2− 3 3. Nearly all of that hydrogen [Ca ][CO ] C C H saturation Ω = 3 O O ion reacts with carbonate O O state K ion to form more bicarbonate sp (a measure of how “easy” it is to form a shell) M u l t i p l e o b s e r v e d indicators of a changing global carbon cycle: (a) atmospheric concentrations of carbon dioxide (CO2) from Mauna Loa (19°32´N, 155°34´W – red) and South Pole (89°59´S, 24°48´W – black) since 1958; (b) partial pressure of dissolved CO2 at the ocean surface (blue curves) and in situ pH (green curves), a measure of the acidity of ocean water. -
Carbon Dynamics of Subtropical Wetland Communities in South Florida DISSERTATION Presented in Partial Fulfillment of the Require
Carbon Dynamics of Subtropical Wetland Communities in South Florida DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Jorge Andres Villa Betancur Graduate Program in Environmental Science The Ohio State University 2014 Dissertation Committee: William J. Mitsch, Co-advisor Gil Bohrer, Co-advisor James Bauer Jay Martin Copyrighted by Jorge Andres Villa Betancur 2014 Abstract Emission and uptake of greenhouse gases and the production and transport of dissolved organic matter in different wetland plant communities are key wetland functions determining two important ecosystem services, climate regulation and nutrient cycling. The objective of this dissertation was to study the variation of methane emissions, carbon sequestration and exports of dissolved organic carbon in wetland plant communities of a subtropical climate in south Florida. The plant communities selected for the study of methane emissions and carbon sequestration were located in a natural wetland landscape and corresponded to a gradient of inundation duration. Going from the wettest to the driest conditions, the communities were designated as: deep slough, bald cypress, wet prairie, pond cypress and hydric pine flatwood. In the first methane emissions study, non-steady-state rigid chambers were deployed at each community sequentially at three different times of the day during a 24- month period. Methane fluxes from the different communities did not show a discernible daily pattern, in contrast to a marked increase in seasonal emissions during inundation. All communities acted at times as temporary sinks for methane, but overall were net -2 -1 sources. Median and mean + standard error fluxes in g CH4-C.m .d were higher in the deep slough (11 and 56.2 + 22.1), followed by the wet prairie (9.01 and 53.3 + 26.6), bald cypress (3.31 and 5.54 + 2.51) and pond cypress (1.49, 4.55 + 3.35) communities. -
Major Ions, Carbonate System, Alkalinity, Ph (Kalff Chapters 13 and 14) A. Major Ions 1. Common Ions There Are 7 Common Ions I
Major Ions, Carbonate System, Alkalinity, pH (Kalff Chapters 13 and 14) A. Major ions 1. Common Ions There are 7 common ions in freshwater: (e.g. Table 13-3, p207) +2 +2 +1 +1 cations: Ca , Mg , Na , K -1 -2 -1 anions: Cl , SO4 , HCO3 +1 -1 In some surface waters, other ionic species are sometimes important (e.g. NH4 , F , organic acids, etc.), but in most cases the 7 ions listed above are the only ions present in significant concentration. In addition to the common ions, OH-1 and H+1 are important species because of the dissociation of water itself. In freshwater, the total concentration of ions and the relative abundance of each are highly variable, reflecting the influence of precipitation (rain), weathering and evaporation. In contrast to freshwater, the world ocean is very uniform (Table 13-6, p214). The total concentration of ions varies only slightly, depending on local advection of freshwater from major rivers and regions of surplus rainfall or evaporation. For “standard” seawater, with “chlorinity” = 19.000 parts per thousand, the following concentrations are observed for the common ions. (Similar ratios are available for nearly the entire periodic table, although at lower concentrations.) These fixed ratios in the sea are the result of the “constancy of composition” of seawater. Ion parts per thousand (g/kg) - - - Cl 18.980 (the definition of "clorinity" includes Br , I , etc.) + Na 10.556 -2 SO4 2.649 +2 Mg 1.272 +2 Ca 0.400 + K 0.380 - HCO3 0.140 Br- 0.065 2. Sources of ions in freshwater a. -
Geochemistry of Corals: Proxies of Past Ocean Chemistry, Ocean Circulation, and Climate
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 8354–8361, August 1997 Colloquium Paper This paper was presented at a colloquium entitled ‘‘Carbon Dioxide and Climate Change,’’ organized by Charles D. Keeling, held November 13–15, 1995, at the National Academy of Sciences, Irvine, CA. Geochemistry of corals: Proxies of past ocean chemistry, ocean circulation, and climate ELLEN R. M. DRUFFEL Department of Earth System Science, University of California, Irvine, CA 92697 ABSTRACT This paper presents a discussion of the status Second, a synthesis is presented of the available proxy of the field of coral geochemistry as it relates to the recovery of records from corals as they relate to past climate, ocean past records of ocean chemistry, ocean circulation, and climate. circulation changes, and anthropogenic input of excess CO2. The first part is a brief review of coral biology, density banding, For some databases, the anthropogenic CO2 appears clear and and other important factors involved in understanding corals as globally distributed. For other databases it appears that vari- proxies of environmental variables. The second part is a syn- ability on interannual to decadal time scales complicates a thesis of the information available to date on extracting records straightforward attempt to separate natural perturbations of the carbon cycle and climate change. It is clear from these from the anthropogenic CO2 signal on the Earth’s environ- proxy records that decade time-scale variability of mixing pro- ment. Shen (4) presents a review of the types of coral archives cesses in the oceans is a dominant signal. That Western and available from the perspective of historical El Nin˜o-Southern Eastern tropical Pacific El Nin˜o-Southern Oscillation (ENSO) Oscillation (ENSO) influences on the tropical Pacific Ocean. -
Kinematic and Dynamic Scaling of Copepod Swimming
fluids Review Kinematic and Dynamic Scaling of Copepod Swimming Leonid Svetlichny 1,* , Poul S. Larsen 2 and Thomas Kiørboe 3 1 I.I. Schmalhausen Institute of Zoology, National Academy of Sciences of Ukraine, Str. B. Khmelnytskogo, 15, 01030 Kyiv, Ukraine 2 DTU Mechanical Engineering, Fluid Mechanics, Technical University of Denmark, Building 403, DK-2800 Kgs. Lyngby, Denmark; [email protected] 3 Centre for Ocean Life, Danish Technical University, DTU Aqua, Building 202, DK-2800 Kgs. Lyngby, Denmark; [email protected] * Correspondence: [email protected] Received: 30 March 2020; Accepted: 6 May 2020; Published: 11 May 2020 Abstract: Calanoid copepods have two swimming gaits, namely cruise swimming that is propelled by the beating of the cephalic feeding appendages and short-lasting jumps that are propelled by the power strokes of the four or five pairs of thoracal swimming legs. The latter may be 100 times faster than the former, and the required forces and power production are consequently much larger. Here, we estimated the magnitude and size scaling of swimming speed, leg beat frequency, forces, power requirements, and energetics of these two propulsion modes. We used data from the literature together with new data to estimate forces by two different approaches in 37 species of calanoid copepods: the direct measurement of forces produced by copepods attached to a tensiometer and the indirect estimation of forces from swimming speed or acceleration in combination with experimentally estimated drag coefficients. Depending on the approach, we found that the propulsive forces, both for cruise swimming and escape jumps, scaled with prosome length (L) to a power between 2 and 3. -
Circulating Extracellular Vesicles As Biomarkers and Drug Delivery Vehicles in Cardiovascular Diseases
biomolecules Review Circulating Extracellular Vesicles As Biomarkers and Drug Delivery Vehicles in Cardiovascular Diseases Renata Caroline Costa de Freitas 1,2 , Rosario Dominguez Crespo Hirata 2 , Mario Hiroyuki Hirata 2 and Elena Aikawa 1,3,4,* 1 Center for Interdisciplinary Cardiovascular Sciences, Division of Cardiovascular Medicine, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA; [email protected] 2 Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of Sao Paulo, Sao Paulo 05508-000, Brazil; [email protected] (R.D.C.H.); [email protected] (M.H.H.) 3 Center for Excellence in Vascular Biology, Division of Cardiovascular Medicine, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA 4 Department of Human Pathology, Sechenov First Moscow State Medical University, 119992 Moscow, Russia * Correspondence: [email protected]; Tel.: +1-617-730-7755 Abstract: Extracellular vesicles (EVs) are composed of a lipid bilayer containing transmembrane and soluble proteins. Subtypes of EVs include ectosomes (microparticles/microvesicles), exosomes, and apoptotic bodies that can be released by various tissues into biological fluids. EV cargo can modulate physiological and pathological processes in recipient cells through near- and long-distance intercellular communication. Recent studies have shown that origin, amount, and internal cargos (nucleic acids, proteins, and lipids) of EVs are variable under different pathological conditions, including cardiovascular diseases (CVD). The early detection and management of CVD reduce premature morbidity and mortality. Circulating EVs have attracted great interest as a potential biomarker for diagnostics and follow-up of CVD. This review highlights the role of circulating EVs Citation: de Freitas, R.C.C.; Hirata, as biomarkers for diagnosis, prognosis, and therapeutic follow-up of CVD, and also for drug delivery. -
Revisión Del Género Lolliguncula Steenstrup, 1881 (Cephalopoda: Loliginidae) Frente a La Costa Del Pacífico De América Del Sur
Rev. peru. biol. 20(2): 129 - 136 (Diciembre 2013) the genus LOLLIGUNCULA off the Pacific Coast of South America FACULTAD DE CIENCIAS BIOLÓGICAS UNMSM ISSN-L 1561-0837 TRABAJOS ORIGINALES Revision of the genus Lolliguncula Steenstrup, 1881 (Cephalopoda: Loliginidae) off the Pacific Coast of South America Revisión del género Lolliguncula Steenstrup, 1881 (Cephalopoda: Loliginidae) frente a la costa del Pacífico de América del Sur Franz Cardoso1 and Frederick G. Hochberg2 1 Laboratorio de Biología y Sistemática de Invertebrados Marinos, Facultad de Ciencias Biológicas, Universidad Na- Abstract cional Mayor de San Marcos, Apdo. 11-0058, Lima 11, Perú. In the present paper the species from the genus Lolliguncula Steentrup, 1881 (Cephalopo- 2 Department of Invertebrate Zoology, Santa Barbara Museum of Natural History, 2559 Puesta del Sol, Santa da: Loliginidae) in Southeastern Pacific Ocean are reviewed. The presence of Lolliguncula Barbara, California 93105-2936, USA. (Lolliguncula) panamensis Berry, 1911, Lolliguncula (Loliolopsis) diomedeae Hoyle, 1911 and Email Franz Cardoso: [email protected] Lolliguncula (Lolliguncula) argus Brakoniecki and Roper, 1985 are confirmed from Mexican waters to Perú and the species Lolliguncula (Lolliguncula) argus collected during a cruise of the R/V Anton Bruun from 1966 off the coast of South America is recorded for the first time in Peruvian waters. A key to identification of Pacific species is given. We report a diagnostic feature with taxonomic remarks of these species. Updated information on the distribution, biology, and fisheries of each species also is discussed. Keywords: Lolliguncula; taxonomy; distribution; biology; Southeastern Pacific. Resumen En el presente trabajo las especies del género Lolliguncula Steentrup, 1881 (Cephalopoda: Loliginidae) en el Océano Pacífico Sudeste son revisados.