Biology of the Bluntnose Stingray, <I>Dasyatis Sayi,</I> in Florida

Total Page:16

File Type:pdf, Size:1020Kb

Biology of the Bluntnose Stingray, <I>Dasyatis Sayi,</I> in Florida BULLETIN OF MARINE SCIENCE, 45( I): 15-25, 1989 BIOLOGY OF THE BLUNTNOSE STINGRAY, DASYATIS SAYI, IN FLORIDA COASTAL LAGOONS Franklin F. Snelson, Jr" Sherry E. Williams-Hooper and Thomas H. Schmid ABSTRACT Dasyatis sayi is a common year-round resident in the brackish Indian River lagoon system on the central east coast of Florida. We studied the species in the Cape Canaveral area from July 1975 to January 1978. Catch-per-unit-effort generally peaked in the spring and fall, was depressed in winter, and usually was significantly higher at night than during the day. Catch rates were always highest in Mosquito Lagoon, the most saline section of the study area. Females reached a size of 73 cm DW and 21 kg; males reached 52 cm and 7 kg. Fema]es matured between 50-54 cm DW and males between 30-36 cm. The reproductive cycle was significantly different from that of the sympatric D. sabina. Ovarian egg size and male gonaso- matic index both peaked in May, indicating that mating occurred in spring. Uterine eggs were present from June through the following March but no embryonic development was evident. Fetal development began in early April and parturition occurred in middle to late May, followed immediately by ovulation. There were 1-6 young per brood and neonates were 15-17 cm DW at birth. The bluntnose stingray, Dasyatis sayi, is distributed in western Atlantic coastal waters from Massachusetts to southern Brazil, including the Gulf of Mexico and many islands in the Greater Antilles. Although it is common to abundant in some parts of its range (Bigelow and Schroeder, 1953), it is the most poorly known of the four Dasyatis species inhabiting Atlantic and Gulf coastal waters of the United States. The discovery of large, accessible stingray populations in lagoons and estuaries on the central east coast of Florida (Snelson and Williams, 1981) prompt- ed a comparative study of the natural history of D, sayi and the related D. sabina (Snelson et al., 1988). This is the third in a series of papers dealing with the biology of rays in the Indian River Lagoon system. STUDY AREA AND METHODS The Indian River Lagoon system has been described and mapped by a number of recent authors (Gilmore, 1977; Snelson and Williams, 198]; Snelson, 1983; Snelson et aI., 1988), Our studies have been concentrated in the northern part of the system, specifically Mosquito Lagoon, Indian River, and Banana River in Brevard County, Florida, Data for this report were collected between July 1975 and January 1978, During that time, data were taken from 2,421 D. sayi. We observed rays from small drifting boats and by wading in clear, shallow water. Animals were collected by means of trawls, seines, tangle nets, dip nets, cast nets, and gigs, Depth, salinity and substrate were recorded at the time of observation or capture for most animals. The majority of D. sayi specimens were collected with braided-nylon tangle nets 90-229 m long, 3.7 m deep, with 30.5-40.6-cm stretch mesh. These nets were set in water from 1.5-4 m deep. Rays swimming into the nets became entangled by their caudal spines, with the retrorse marginal hooks snaring the filaments of the nylon twine. Subsequent thrashing usually resulted in the ray becoming thoroughly entangled in the net. The animals were always alive and usually in good condition when removed from the net, even after an overnight set. From November 1976 to November 1977, tangle nets were used to collect samples of approximately 25 adult D. sayi per month for reproductive analysis. Major netting sites are identified elsewhere (Snelson et aI., 1988), Because detailed records were kept on all collecting with tangle nets, it was possible to quantify the sampling effort, A 24-h net day (NetDay24) was defined as 100 m of net fished for 24 h, calculated as follows: NetDay24 = (m of net deployed! I00) x (h net deployed!24). Fishing effort was also calculated separately for daylight and night-time sampling as follows: NetDayl2 (or NetNight]2) = 15 16 BULLETIN OF MARINE SCIENCE, VOL. 45, NO.1, 1989 Table 1. Effort devoted to fishing with tangle nets in the three main sections of the Indian River lagoon system in northern Brevard County, Florida Mosquito Lagoon Indian River Banana River Year/season Hours NetDay24 Hours NetDay24 Hours NetDay24 1976 Summer 22.5 2.1 112.0 10.7 Fall 208.5 19.9 119.0 11.4 1977 Winter 116.0 11.1 224.0 21.4 Spring 437.5 51.0 208.5 19.3 24.5 2.3 Summer 842.8 106.6 235.0 29.6 68.5 10.2 Fall 912.1 83.1 166.2 20.9 24.0 3.8 1978 Winter 127.7 12.2 89.3 8.5 48.5 4.6 Spring 641.2 51.4 169.3 15.8 24.5 2.3 Summer 577.5 51.6 88.0 8.4 25.6 2.4 Fall 298.4 28.0 89.0 7.9 25.8 2.2 (m of net deployed/lOa) x (day (or night) h net deployed/12). The hours of 0600 and 1800 were designated as the changcover times between night and day. Catch-per-unit-effort data were summarized by season as follows: December-February = Winter, March-May = Spring, June-August = Summer, September-November = Fall. Retained specimens were returned to the laboratory on ice, sexed externally, weighed wet after blotting on a top-loading electronic balance or mechanical platform balance, and then examined immediately (usually) or frozen for study later. Disk width and length were measured for all specimens with forester's tree calipers to the nearest 0.1 cm (Hubbs and Ishiyama, 1968). Clasper length was measured with dial calipers to the nearest millimeter from the posterior end of the cloacal slit to the tip of the longest clasper with the specimen laying on its dorsum and the clasper supported to eliminate sag. The gonads and reproductive tracts were removed, wrapped in cheesecloth, and preserved in 10% formalin for later analysis. Specimens were assigned to one offour reproductive stages: Males-(1) immature, testes and claspers undeveloped; (2) mature but nonreproductive, claspers fully developed and testes enlarged but without secondary lobes; (3) mature and reproductive, testes with secondary lobes indicative of active sperm production (Babel, 1967; Lewis, 1982); (4) mature and sexually active, sperm present in vas deferens, sperm sac, or clasper groove; Females-(1) immature, no ovarian development; (2) mature but non- reproductive, developing eggs in left ovary; (3) mature and sexually active, mature ova in left ovary and/or left uterus; (4) pregnant, embryos in left uterus. We saw no evidence that the right ovary or uterus was functional. After associated mesentaries were removed, the gonads (both testes, left ovary) were blotted and weighed wet to the nearest gram on a top-loading electronic balance and were examined for reproductive activity. Gonasomatic index (GSI) was calculated as: (gonad wt/(body wt - gonad wt) x 100. In mature females, eggs were dissected from the left ovary. One group of eggs was always distinctly larger than the remainder. These enlarged eggs were measured with dial calipers. Since the fixed eggs were often ovoid in shape, length and width were averaged to give egg diameter to the nearest 0.1 mm. The presence of uterine eggs was recorded and the ova were preserved when possible. Any embryos present were removed, weighed after blotting, measured, and sexed when possible. RESULTS Distribution, Occurrence, and Abundance. - Dasyatis sayi was found throughout the study area and it was taken in every month of the year. Captures spanned a water temperature range of 12.5-32.5°C and a salinity range of 25-430/00.Adults were not often found on shallow seagrass flats and were usually taken in water deeper than I m. Only young-of-the-year and small juveniles were seen regularly on the shoals, and they were found there primarily in fall and winter months. SNELSON ET AL.: BLUNTNOSE STINGRAY IN FLORIDA LAGOONS 17 10 6 ~ Mosqurto lagoon Ii: Indian River Ii: 5 0 8 • Banana River o Day It ~ • Night W ... ~ 4 t: 6 z Z :::l ~ 3 Ii: II: w 4 w Q. i ~ 2 0 0 ~ 2 ~ 0 0 1 0 0 S S F S F W S S F W S S F 1977 1978 1976 1977 1978 Figure I (Left). Seasonal CPUE for Dasyatis sayi taken in tangle nets in the Indian River lagoon system between summer, 1976 and fall, 1978. The asterisk represents a CPUE of zero for both Indian and Banana rivers in the winter of 1978. Figure 2 (Right). Day and night CPUE for Dasyatis sayi taken in tangle nets in Mosquito Lagoon between summer, 1976 and fall, 1978. Despite being infrequently observed on shoals, D. sayi was abundant in the lagoons as suggested by the large number of individuals taken in tangle nets set in water 1-3 m deep. Fishing effort varied in the three main sections of the lagoon system (Table 1). After the winter of 1977, effort was consistently highest in Mosquito Lagoon and moderate effort was expended in Indian River throughout the study. Sampling in Banana River did not begin until April 1977 and effort was always low there due to logistic constraints. Seasonal CPUE's for the three bodies of water sampled are shown in Figure 1. Capture rates were usually low in the Banana and Indian rivers, with an overall mean CPUE of 1.4 animals per NetDay24.
Recommended publications
  • A Practical Handbook for Determining the Ages of Gulf of Mexico And
    A Practical Handbook for Determining the Ages of Gulf of Mexico and Atlantic Coast Fishes THIRD EDITION GSMFC No. 300 NOVEMBER 2020 i Gulf States Marine Fisheries Commission Commissioners and Proxies ALABAMA Senator R.L. “Bret” Allain, II Chris Blankenship, Commissioner State Senator District 21 Alabama Department of Conservation Franklin, Louisiana and Natural Resources John Roussel Montgomery, Alabama Zachary, Louisiana Representative Chris Pringle Mobile, Alabama MISSISSIPPI Chris Nelson Joe Spraggins, Executive Director Bon Secour Fisheries, Inc. Mississippi Department of Marine Bon Secour, Alabama Resources Biloxi, Mississippi FLORIDA Read Hendon Eric Sutton, Executive Director USM/Gulf Coast Research Laboratory Florida Fish and Wildlife Ocean Springs, Mississippi Conservation Commission Tallahassee, Florida TEXAS Representative Jay Trumbull Carter Smith, Executive Director Tallahassee, Florida Texas Parks and Wildlife Department Austin, Texas LOUISIANA Doug Boyd Jack Montoucet, Secretary Boerne, Texas Louisiana Department of Wildlife and Fisheries Baton Rouge, Louisiana GSMFC Staff ASMFC Staff Mr. David M. Donaldson Mr. Bob Beal Executive Director Executive Director Mr. Steven J. VanderKooy Mr. Jeffrey Kipp IJF Program Coordinator Stock Assessment Scientist Ms. Debora McIntyre Dr. Kristen Anstead IJF Staff Assistant Fisheries Scientist ii A Practical Handbook for Determining the Ages of Gulf of Mexico and Atlantic Coast Fishes Third Edition Edited by Steve VanderKooy Jessica Carroll Scott Elzey Jessica Gilmore Jeffrey Kipp Gulf States Marine Fisheries Commission 2404 Government St Ocean Springs, MS 39564 and Atlantic States Marine Fisheries Commission 1050 N. Highland Street Suite 200 A-N Arlington, VA 22201 Publication Number 300 November 2020 A publication of the Gulf States Marine Fisheries Commission pursuant to National Oceanic and Atmospheric Administration Award Number NA15NMF4070076 and NA15NMF4720399.
    [Show full text]
  • Sarahwebb Thesis 2016.Pdf (2.592Mb)
    DIFFERENCES IN HABITAT UTILIZATION AND TEMPERATURE PREFERENCE BETWEEN MALE AND FEMALE ATLANTIC STINGRAYS DASYATIS SABINA IN THE HERB RIVER NEAR SAVANNAH, GEORGIA, AND INCORPORATING STINGRAY DATA INTO A K-12 CLASSROOM ACTIVITY by SARAH FAE WEBB A Thesis Submitted to the Graduate Faculty in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE IN MARINE SCIENCES SAVANNAH STATE UNIVERSITY August 2016 DIFFERENCES IN HABITAT UTILIZATION AND TEMPERATURE PREFERENCE BETWEEN MALE AND FEMALE ATLANTIC STINGRAYS DASYATIS SABINA IN THE HERB RIVER NEAR SAVANNAH, GEORGIA, AND INCORPORATING STINGRAY PRESENCE DATA INTO A K-12 CLASSROOM ACTIVITY by SARAH FAE WEBB Approved: ______________________________ Thesis Advisor Committee Members ______________________________ ______________________________ ______________________________ ______________________________ Approved: ______________________________ ________________ Director Date of Thesis Defense ______________________________ Chair ______________________________ Dean, College of Sciences and Technology DEDICATION For my chums. Thank you for everything. iii ACKNOWLEDGMENTS I would like to thank my advisor, Dr. Mary Carla Curran, for helping me reach my full potential and guiding me along the way. Thank you to my committee members, Dr. Tara Cox and Dr. Amanda Kaltenberg, for your guidance and assistance. To the Marine Science faculty and staff, thank you for making my time at Savannah State University a very enjoyable and adventurous one. Thank you to my lab mates, B. Brinton, C. Brinton, J. Güt, S. Ramsden, H. Reilly, and D. Smith, for continuous help and support along the way. To my lab technician and editor, Michele Sherman, thank you for everything. Thank you to the many Marine Sciences graduate students for always being willing to fish or clean receivers with me.
    [Show full text]
  • Reproductive Biology of the Stingray Hypanus Marianae , an Endemic
    ReproduCtive Biology of the stingray Hypanus marianae, an endemic species from Southwestern Tropical Atlantic Ocean Biologia Reprodutiva da raia Hypanus marianae, uma espécie endêmica do SudOeste do Oceano Atlântico Tropical Biología reproductiva de la raya Hypanus marianae, una especie endémica del suROeste del Océano Atlántico Tropical Ana Rita Onodera Palmeira Nunes1 Getulio Rincon1,2 Ricardo de Souza Rosa3 Jorge Luiz Silva Nunes1 Abstract The Brazilian Large-eyed stingray Hypanus marianae is the smallest species of the family Dasyatidae in Brazil. This study aims to provide data on the reproductive biology of this species captured in artisanal fisheries from Ceará State. A total of 299 individuals of H. marianae were recorded at monitoring landings and adult male to female sex ratio was significantly different (1:2.9), indicating a possible spatial segregation between males and females. The size range was from 13.0 to 36.2cm in disc width (DW). Females reached greater size and body mass (36.2cm DW and 1855g) than males (29.3cm DW and 915g). The reproductive system analyses were based on 81 preserved specimens. The DW50 parameter was estimated at 26.1cm DW for females, and 23.8cm DW for males. Only the left uterus is functional, and birth size was estimated at 13.0–14.0cm DW. Vitellogenesis occurred concurrently with a short gestation (shorter than 6 months) and uterine fecundity is only one embryo per reproductive cycle, which seems to be asynchronous. Keywords: maturity, fecundity, birth, embryos, Dasyatidae. Resumo A raia Mariquita Hypanus marianae é a menor espécie da família Dasyatidae no Brasil e este trabalho tem como objetivo reportar informações acerca da sua biologia reprodutiva a partir de capturas da pesca artesanal no estado do Ceará.
    [Show full text]
  • An Annotated Checklist of the Chondrichthyan Fishes Inhabiting the Northern Gulf of Mexico Part 1: Batoidea
    Zootaxa 4803 (2): 281–315 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2020 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4803.2.3 http://zoobank.org/urn:lsid:zoobank.org:pub:325DB7EF-94F7-4726-BC18-7B074D3CB886 An annotated checklist of the chondrichthyan fishes inhabiting the northern Gulf of Mexico Part 1: Batoidea CHRISTIAN M. JONES1,*, WILLIAM B. DRIGGERS III1,4, KRISTIN M. HANNAN2, ERIC R. HOFFMAYER1,5, LISA M. JONES1,6 & SANDRA J. RAREDON3 1National Marine Fisheries Service, Southeast Fisheries Science Center, Mississippi Laboratories, 3209 Frederic Street, Pascagoula, Mississippi, U.S.A. 2Riverside Technologies Inc., Southeast Fisheries Science Center, Mississippi Laboratories, 3209 Frederic Street, Pascagoula, Missis- sippi, U.S.A. [email protected]; https://orcid.org/0000-0002-2687-3331 3Smithsonian Institution, Division of Fishes, Museum Support Center, 4210 Silver Hill Road, Suitland, Maryland, U.S.A. [email protected]; https://orcid.org/0000-0002-8295-6000 4 [email protected]; https://orcid.org/0000-0001-8577-968X 5 [email protected]; https://orcid.org/0000-0001-5297-9546 6 [email protected]; https://orcid.org/0000-0003-2228-7156 *Corresponding author. [email protected]; https://orcid.org/0000-0001-5093-1127 Abstract Herein we consolidate the information available concerning the biodiversity of batoid fishes in the northern Gulf of Mexico, including nearly 70 years of survey data collected by the National Marine Fisheries Service, Mississippi Laboratories and their predecessors. We document 41 species proposed to occur in the northern Gulf of Mexico.
    [Show full text]
  • Class Wars: Chondrichthyes and Osteichthyes Dominance in Chesapeake Bay, 2002-2012
    Class Wars: Chondrichthyes and Osteichthyes dominance in Chesapeake Bay, 2002-2012. 01 July 2013 Introduction The objective of this analysis was to demonstrate a possible changing relationship between two Classes of fishes, Osteichthyes (the bony fishes) and Chondrichthyes (the cartilaginous fishes) in Chesapeake Bay based on 11 years of monitoring. If any changes between the two Classes appeared to be significant, either statistically or anecdotally, the data were explored further in an attempt to explain the variation. The Class Osteichthyes is characterized by having a skeleton made of bone and is comprised of the majority of fish species worldwide, while the Chondrichthyes skeleton is made of cartilage and is represented by the sharks, skates, and rays (the elasmobranch fishes) and chimaeras1. Many shark species are generally categorized as apex predators, while skates and rays and some smaller sharks can be placed into the mesopredator functional group (Myers et al., 2007). By definition, mesopredators prey upon a significant array of lower trophic groups, but also serve as the prey base for apex predators. Global demand for shark and consequential shark fishing mortality, estimated at 97 million sharks in 2010 (Worm et al., 2013), is hypothesized to have contributed to the decline of these apex predators in recent years (Baum et al., 2003 and Fowler et al., 2005), which in turn is suggested to have had a cascading effect on lower trophic levels—an increase in mesopredators and subsequent decrease in the prey base (Myers et al., 2007). According to 10 years of trawl survey monitoring of Chesapeake Bay, fish species composition of catches has shown a marked change over the years (Buchheister et al., 2013).
    [Show full text]
  • Worms, Germs, and Other Symbionts from the Northern Gulf of Mexico CRCDU7M COPY Sea Grant Depositor
    h ' '' f MASGC-B-78-001 c. 3 A MARINE MALADIES? Worms, Germs, and Other Symbionts From the Northern Gulf of Mexico CRCDU7M COPY Sea Grant Depositor NATIONAL SEA GRANT DEPOSITORY \ PELL LIBRARY BUILDING URI NA8RAGANSETT BAY CAMPUS % NARRAGANSETT. Rl 02882 Robin M. Overstreet r ii MISSISSIPPI—ALABAMA SEA GRANT CONSORTIUM MASGP—78—021 MARINE MALADIES? Worms, Germs, and Other Symbionts From the Northern Gulf of Mexico by Robin M. Overstreet Gulf Coast Research Laboratory Ocean Springs, Mississippi 39564 This study was conducted in cooperation with the U.S. Department of Commerce, NOAA, Office of Sea Grant, under Grant No. 04-7-158-44017 and National Marine Fisheries Service, under PL 88-309, Project No. 2-262-R. TheMississippi-AlabamaSea Grant Consortium furnish ed all of the publication costs. The U.S. Government is authorized to produceand distribute reprints for governmental purposes notwithstanding any copyright notation that may appear hereon. Copyright© 1978by Mississippi-Alabama Sea Gram Consortium and R.M. Overstrect All rights reserved. No pari of this book may be reproduced in any manner without permission from the author. Primed by Blossman Printing, Inc.. Ocean Springs, Mississippi CONTENTS PREFACE 1 INTRODUCTION TO SYMBIOSIS 2 INVERTEBRATES AS HOSTS 5 THE AMERICAN OYSTER 5 Public Health Aspects 6 Dcrmo 7 Other Symbionts and Diseases 8 Shell-Burrowing Symbionts II Fouling Organisms and Predators 13 THE BLUE CRAB 15 Protozoans and Microbes 15 Mclazoans and their I lypeiparasites 18 Misiellaneous Microbes and Protozoans 25 PENAEID
    [Show full text]
  • Mississippi's Sharks and Rays an Educational Guide for Mississippi
    Mississippi’s Sharks and Rays An educational guide for Mississippi Aquarium Photo provided by Mississippi Aquarium Mississippi’s Sharks and Rays An educational guide for Mississippi Aquarium Edited by Marcus Drymon, PhD1,2 Illustrations by Bryan Huerta-Beltran1 Species data compiled by Matthew Jargowsky1,2 and Emily Seubert1 1Mississippi State University Extension Service 2Mississippi-Alabama Sea Grant Consortium MASGP-21-016 Contents 2 Using This Guide ............................3 Mississippi Hammerheads Bonnethead ............................ 24 Anatomy of a Shark .........................4 Scalloped hammerhead .............. 26 Anatomy of a Ray ...........................5 Great hammerhead ................... 28 Mississippi Aquarium Sharks Mississippi Deepwater Sharks Nurse shark ..............................6 Gulper shark ........................... 30 Sandbar shark ...........................8 Sharpnose sevengill shark ........... 32 Sand tiger shark ....................... 10 Goblin shark ........................... 34 Common Mississippi Sharks Mississippi Aquarium Rays Atlantic sharpnose shark ............. 12 Cownose ray ........................... 36 Blacknose shark ....................... 14 Atlantic stingray ...................... 38 Blacktip shark ......................... 16 Southern stingray ..................... 40 Mississippi Apex Predators Other Mississippi Rays Bull shark .............................. 18 Bluntnose stingray .................... 42 Tiger shark ..................................20 Smooth butterfly ray
    [Show full text]
  • Improved Environmental DNA Reference Library Detects Overlooked Marine Fishes in New Jersey, United States
    fmars-07-00226 May 1, 2020 Time: 12:38 # 1 ORIGINAL RESEARCH published: 05 May 2020 doi: 10.3389/fmars.2020.00226 Improved Environmental DNA Reference Library Detects Overlooked Marine Fishes in New Jersey, United States Mark Y. Stoeckle*, Mithun Das Mishu and Zachary Charlop-Powers Program for the Human Environment, The Rockefeller University, New York, NY, United States An accurate, comprehensive reference sequence library maximizes information gained from environmental DNA (eDNA) metabarcoding of marine fishes. Here, we used a regional checklist and early results from an ongoing eDNA time series to target mid- Atlantic U.S. coastal fishes lacking reference sequences. We obtained 60 specimens representing 31 species from NOAA trawl surveys and institutional collections, and analyzed 12S and COI barcode regions, the latter to confirm specimen identification. Combined with existing GenBank accessions, the enhanced 12S dataset covered most Edited by: (74%) of 341 fishes on New Jersey State checklist including 95% of those categorized Andrew Stanley Mount, abundant or common. For eDNA time series, we collected water samples approximately Clemson University, United States twice monthly for 24 months at an ocean and a bay site in New Jersey. Metabarcoding Reviewed by: Luke Thompson, was performed using separate 12S primer sets targeting bony and cartilaginous Atlantic Oceanographic fishes. Bioinformatic analysis of Illumina MiSeq fastq files with the augmented library and Meteorological Laboratory (NOAA), United States yielded exact matches for 90% of the 104 fish amplicon sequence variants generated Christopher Meyer, from field samples. Newly obtained reference sequences revealed two southern U.S. Smithsonian National Museum species as relatively common warm season migrants: Gulf kingfish (Menticirrhus of Natural History (SI), United States littoralis) and Brazilian cownose ray (Rhinoptera brasiliensis).
    [Show full text]
  • 604 Evolution & Ontology Symposium, Grand Ballroom I, Saturday 25 July 2009 Paula Mabee University of South Dakota, Vermilli
    604 Evolution & Ontology Symposium, Grand Ballroom I, Saturday 25 July 2009 Paula Mabee University of South Dakota, Vermillion, SD, United States Phenoscape: Using Ontologies to Link Comparative Morphology to Genes Decades of comparative anatomical studies in ichthyology and herpetology have resulted in a rich body of ‘free-text’ data. As these data grow, they are increasingly hard to align and synthesize across taxonomic groups, and synthetic questions concerning the developmental and genetic basis of evolutionary changes in morphology cannot be easily or efficiently addressed. In order for this volume of comparative anatomical data to be analyzed in a developmental genetic context, it must first be rendered computable. One way to achieve this is to use ontologies. Using ostariophysan fishes as a prototype, the Phenoscape project has developed a system that includes ontologies representing expert knowledge of anatomy and taxonomy (the Teleost Anatomy Ontology and the Teleost Taxonomy Ontology), software for data curation (Phenex), and a knowledgebase that supports ontology-based reasoning about evolutionary phenotype data (PhenoscapeKB, http://phenoscape.org/kb). To date, over 5,000 characters from the phylogenetic literature have been annotated for 8,300 species, resulting in over eight million annotated phenotypes. PhenoscapeKB combines these evolutionary phenotypes with information about genetically characterized phenotype from ZFIN, the zebrafish community database. Through ontology-based reasoning over expert knowledge in taxonomy,
    [Show full text]
  • Updated Species List for Sharks Caught in Iccat Fisheries
    SCRS/2014/027 Collect. Vol. Sci. Pap. ICCAT, 71(6): 2557-2561 (2015) UPDATED SPECIES LIST FOR SHARKS CAUGHT IN ICCAT FISHERIES Paul de Bruyn1 and Carlos Palma 1 SUMMARY This document presents a brief discussion of the increasing list of species being reported to the ICCAT secretariat, together with a proposal for complete taxonomic classification aimed to be revised and approved by the Sharks Working Group. RÉSUMÉ Ce document présente une brève discussion sur la liste croissante des espèces qui sont déclarées au Secrétariat de l'ICCAT, conjointement avec une proposition visant à ce que le Groupe d'espèces sur les requins révise et approuve une classification taxonomique complète. RESUMEN Este documento presenta un breve debate sobre la lista cada vez mayor de especies que se comunican a la Secretaría de ICCAT, junto con una propuesta para completar la clasificación taxonómica con miras a su revisión y aprobación por el Grupo de especies sobre tiburones. KEYWORDS Sharks, Rays, Taxonomy Overview of ICCAT species According to the ICCAT website (http://www.iccat.int/en/introduction.htm), about 30 species are of direct concern to ICCAT: Atlantic bluefin (Thunnus thynnus thynnus), skipjack (Katsuwonus pelamis), yellowfin (Thunnus albacares), albacore (Thunnus alalunga) and bigeye tuna (Thunnus obesus); swordfish (Xiphias gladius); billfishes such as white marlin (Tetrapturus albidus), blue marlin (Makaira nigricans), sailfish (Istiophorus albicans) and spearfish (Tetrapturus pfluegeri); mackerels such as spotted Spanish mackerel (Scomberomorus maculatus) and king mackerel (Scomberomorus cavalla); and, small tunas like black skipjack (Euthynnus alletteratus), frigate tuna (Auxis thazard), and Atlantic bonito (Sarda sarda). Through the Convention, it is established that ICCAT is the only fisheries organization that can undertake the range of work required for the study and management of tunas and tuna-like fishes in the Atlantic Ocean and adjacent seas.
    [Show full text]
  • 16 3.0 Description, Distribution, and Use of Essential Fish
    3.0 Description, Distribution and Use of Essential Fish Habitat 3.0 DESCRIPTION, DISTRIBUTION, AND USE OF ESSENTIAL FISH HABITAT 3.1 Estuarine and Inshore Habitats 3.1.1 Estuarine 3.1.1.1 Estuarine Emergent (Saltmarsh and Brackish Marsh) 3.1.1.1.1 Description and Ecological Role and Function The saltmarsh is a type of wetland. Wetlands are classified on the basis of their hydrology, vegetation and substrate. One classification system proposed by Cowardin et al., (1979) and used by the USFWS classifies wetlands into five ecological systems. Estuarine emergents fall into two of these systems, the Estuarine and Marine. The Estuarine wetland is described as tidal wetlands in low-wave-energy environments, where the salinity is greater than 0.5 parts per thousand (ppt) and is variable owing to evaporation and the mixing of seawater and freshwater. Marine wetlands are described as tidal wetlands that are exposed to waves and currents of the open ocean and have a salinity of greater than 30 ppt. A saltmarsh, as defined by Beeflink (1977), is a “natural or semi-natural salt tolerant grassland and dwarf brushwood on the alluvial sediments bordering saline water bodies whose water level fluctuates either tidal or nontidally”. The flora comprise of erect, rooted, herbaceous hydrophytes dominated by salt- tolerant perennial plants (Cowardin et al. 1979). Structure and function of a saltmarsh are influenced by tide, salinity, nutrients and temperature. The saltmarsh can be a stressful environment to plants and animals, with rapid changes occurring in these abiotic variables (Gosselink 1980; Gosselink et al. 1974). Although species diversity may be lower than in other systems, the saltmarsh is one of the most biologically productive ecosystems in the world (Teal 1962; Teal and Teal, 1969).
    [Show full text]
  • Reproductive Biology
    W&M ScholarWorks VIMS Books and Book Chapters Virginia Institute of Marine Science 2005 Reproductive biology Christina L. Conrath Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/vimsbooks Part of the Aquaculture and Fisheries Commons Recommended Citation Conrath, Christina L., "Reproductive biology" (2005). VIMS Books and Book Chapters. 26. https://scholarworks.wm.edu/vimsbooks/26 This Book Chapter is brought to you for free and open access by the Virginia Institute of Marine Science at W&M ScholarWorks. It has been accepted for inclusion in VIMS Books and Book Chapters by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. FAO FISHER IES TECHNICAL PAPER 474 Management techniques for elasmobranch fisheries - VIMS SH 1 .F2 no.474 Asia-Pacific Economic Cooperation ~(nL; ,re..,~..., <SH j__ rJ, FAO VU) \\-y~ FISHERIES Management techniques ' TECHN ICAL PAPER for elasmobranch fisheries 474 Edited by John A. Musick Virginia Institute of Marine Science Gloucester Point, Virginia United States of America and Ramon Bonfil Wildlife Conservation Society New York United States of America FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Rome, 2005 J/13 7. Reproductive biology Christina L. Conrath Virginia Institute of Marine Science PO Box 1346 Gloucester Point, VA 23062, USA <[email protected]> 7 .1 INTRODUCTION: MODES OF REPRODUCTION 7 .1.1 Introduction Several reproductive specializations are found within the elasmobranchs. All elasmobranchs fertilize internally and produce a relatively small number of large eggs. Elasmobranch fecundity generally ranges from one to two offspring produced a year up to a maximum of 300 in the whale shark (Compagno, 1990; Joung et al., 1996).
    [Show full text]