Establishment & Lineage Dynamics of the SARS-Cov-2 Epidemic in the UK
medRxiv preprint doi: https://doi.org/10.1101/2020.10.23.20218446; this version posted October 27, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license . Establishment & lineage dynamics of the SARS-CoV-2 epidemic in the UK Louis du Plessis†1, John T. McCrone†2, Alexander E. Zarebski†1, Verity Hill†2, Christopher Ruis†3,4, Bernardo Gutierrez1,5, Jayna Raghwani1, Jordan Ashworth2, Rachel Colquhoun2, Thomas R. Connor6,7, Nuno R. Faria1,8, Ben Jackson2, Nicholas J. Loman9, Áine O’Toole2, Samuel M. Nicholls9, Kris V. Parag8, Emily Scher2, Tetyana I. Vasylyeva1, Erik M. Volz8, Alexander Watts12,13, Isaac I. Bogoch10,11, Kamran Khan10,12,13, the COVID-19 Genomics UK (COG-UK) Consortium+,14, David M. Aanensen15,16, Moritz U. G. Kraemer‡1, Andrew Rambaut*‡2, Oliver G. Pybus*‡1,17 1 Department of Zoology, University of Oxford, Oxford, UK. 2 Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK. 3 Molecular Immunity Unit, Department of Medicine, University of Cambridge, Cambridge, UK. 4 Department of Veterinary Medicine, University of Cambridge, Cambridge, UK. 5 School of Biological and Environmental Sciences, Universidad San Francisco de Quito USFQ, Quito, Ecuador. 6 School of Biosciences, Cardiff University, UK. 7 Pathogen Genomics Unit, Public Health Wales NHS Trust, UK. 8 MRC Centre for Global Infectious Disease Analysis, J-IDEA, Imperial College London, UK. 9 Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK.
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