Diversity and Phylogenetic Relationships Of
Total Page:16
File Type:pdf, Size:1020Kb

Load more
Recommended publications
-
Cottus Poecilopus Heckel, 1836, in the River Javorin- Ka, the Tatra
Oecologia Montana 2018, Cottus poecilopus Heckel, 1836, in the river Javorin- 27, 21-26 ka, the Tatra mountains, Slovakia M. JANIGA, Jr. In Tatranská Javorina under Muráň mountain, a small fish nursery was built by Christian Kraft von Institute of High Mountain Biology University of Hohenlohe around 1930. The most comprehensive Žilina, Tatranská Javorina 7, SK-059 56, Slovakia; studies on fish from the Tatra mountains were writ- e-mail:: [email protected] ten by professor Václav Dyk (1957; 1961), Dyk and Dyková (1964a,b; 1965), who studied altitudinal distribution of fish, describing the highest points where fish were found. His studies on fish were likely the most complex studies of their kind during that period. Along with his wife Sylvia, who illus- Abstract. This study focuses on the Cottus poe- trated his studies, they published the first realistic cilopus from the river Javorinka in the north-east studies on fish from the Tatra mountains including High Tatra mountains, Slovakia. The movement the river Javorinka (Dyk and Dyková 1964a). Feri- and residence of 75 Alpine bullhead in the river anc (1948) published the first Slovakian nomenclature were monitored and carefully recorded using GPS of fish in 1948. Eugen K. Balon (1964; 1966) was the coordinates. A map representing their location in next famous ichthyologist who became a recognised the river was generated. This data was collected in expert in the fish fauna of the streams of the Tatra the spring and summer of 2016 and in the autumn mountains, the river Poprad, and various high moun- of 2017. Body length and body weight of 67 Alpine tain lakes. -
Trophic Relationships in Dutch Reservoirs Recently Invaded by Ponto-Caspian Species: Insights from Fish Trends and Stable Isotope Analysis
Aquatic Invasions (2019) Volume 14, Issue 2: 280–298 CORRECTED PROOF Research Article Trophic relationships in Dutch reservoirs recently invaded by Ponto-Caspian species: insights from fish trends and stable isotope analysis Yvon J.M. Verstijnen1,*, Esther C.H.E.T. Lucassen1,2, Marinus van der Gaag3, Arco J. Wagenvoort5, Henk Castelijns4, Henk A.M. Ketelaars4, Gerard van der Velde3,6,7 and Alfons J.P. Smolders1,2 1B-WARE Research Centre, Radboud University, Toernooiveld 1, 6525 ED Nijmegen, The Netherlands 2Department of Aquatic Ecology and Environmental Biology, Institute for Water and Wetland Research, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands 3Department of Animal Ecology and Physiology, Institute for Water and Wetland Research, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands 4Evides Water Company, PO Box 4472, 3006 AL Rotterdam, The Netherlands 5AqWa, Voorstad 45, 4461 RT Goes, The Netherlands 6Naturalis Biodiversity Center, P.O. 9517, 2300 RA Leiden, The Netherlands 7Netherlands Centre of Expertise on Exotic Species (NEC-E). Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands Author e-mails: [email protected] (YJMV), [email protected] (ECHETL), [email protected] (MG), [email protected], (AJW), [email protected] (HC), [email protected] (HAMK), [email protected] (VG), [email protected] (AJPS) *Corresponding author Citation: Verstijnen YJM, Lucassen ECHET, van der Gaag M, Wagenvoort AJ, Abstract Castelijns H, Ketelaars HAM, van der Velde G, Smolders AJP (2019) Trophic Invasive species can directly or indirectly alter (a)biotic characteristics of ecosystems, relationships in Dutch reservoirs recently resulting in changing energy flows through the food web. -
Luth Wfu 0248D 10922.Pdf
SCALE-DEPENDENT VARIATION IN MOLECULAR AND ECOLOGICAL PATTERNS OF INFECTION FOR ENDOHELMINTHS FROM CENTRARCHID FISHES BY KYLE E. LUTH A Dissertation Submitted to the Graduate Faculty of WAKE FOREST UNIVERSITY GRADAUTE SCHOOL OF ARTS AND SCIENCES in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY Biology May 2016 Winston-Salem, North Carolina Approved By: Gerald W. Esch, Ph.D., Advisor Michael V. K. Sukhdeo, Ph.D., Chair T. Michael Anderson, Ph.D. Herman E. Eure, Ph.D. Erik C. Johnson, Ph.D. Clifford W. Zeyl, Ph.D. ACKNOWLEDGEMENTS First and foremost, I would like to thank my PI, Dr. Gerald Esch, for all of the insight, all of the discussions, all of the critiques (not criticisms) of my works, and for the rides to campus when the North Carolina weather decided to drop rain on my stubborn head. The numerous lively debates, exchanges of ideas, voicing of opinions (whether solicited or not), and unerring support, even in the face of my somewhat atypical balance of service work and dissertation work, will not soon be forgotten. I would also like to acknowledge and thank the former Master, and now Doctor, Michael Zimmermann; friend, lab mate, and collecting trip shotgun rider extraordinaire. Although his need of SPF 100 sunscreen often put our collecting trips over budget, I could not have asked for a more enjoyable, easy-going, and hard-working person to spend nearly 2 months and 25,000 miles of fishing filled days and raccoon, gnat, and entrail-filled nights. You are a welcome camping guest any time, especially if you do as good of a job attracting scorpions and ants to yourself (and away from me) as you did on our trips. -
Review and Meta-Analysis of the Environmental Biology and Potential Invasiveness of a Poorly-Studied Cyprinid, the Ide Leuciscus Idus
REVIEWS IN FISHERIES SCIENCE & AQUACULTURE https://doi.org/10.1080/23308249.2020.1822280 REVIEW Review and Meta-Analysis of the Environmental Biology and Potential Invasiveness of a Poorly-Studied Cyprinid, the Ide Leuciscus idus Mehis Rohtlaa,b, Lorenzo Vilizzic, Vladimır Kovacd, David Almeidae, Bernice Brewsterf, J. Robert Brittong, Łukasz Głowackic, Michael J. Godardh,i, Ruth Kirkf, Sarah Nienhuisj, Karin H. Olssonh,k, Jan Simonsenl, Michał E. Skora m, Saulius Stakenas_ n, Ali Serhan Tarkanc,o, Nildeniz Topo, Hugo Verreyckenp, Grzegorz ZieRbac, and Gordon H. Coppc,h,q aEstonian Marine Institute, University of Tartu, Tartu, Estonia; bInstitute of Marine Research, Austevoll Research Station, Storebø, Norway; cDepartment of Ecology and Vertebrate Zoology, Faculty of Biology and Environmental Protection, University of Lodz, Łod z, Poland; dDepartment of Ecology, Faculty of Natural Sciences, Comenius University, Bratislava, Slovakia; eDepartment of Basic Medical Sciences, USP-CEU University, Madrid, Spain; fMolecular Parasitology Laboratory, School of Life Sciences, Pharmacy and Chemistry, Kingston University, Kingston-upon-Thames, Surrey, UK; gDepartment of Life and Environmental Sciences, Bournemouth University, Dorset, UK; hCentre for Environment, Fisheries & Aquaculture Science, Lowestoft, Suffolk, UK; iAECOM, Kitchener, Ontario, Canada; jOntario Ministry of Natural Resources and Forestry, Peterborough, Ontario, Canada; kDepartment of Zoology, Tel Aviv University and Inter-University Institute for Marine Sciences in Eilat, Tel Aviv, -
Applied Freshwater Fish Biology an Introduction to Methods of Research and Management
How to preserve and how to exploit natural populations to be sustained for the future. Plain questions without equally plain answers Applied freshwater fish biology An introduction to methods of research and management Arne N. Linløkken, ass. professor Inland Norway University of Applied Sciences Arne N. 1 CONTENT INTRODUCTION .................................................................................................................................................. 3 Prehistory and evolution ......................................................................................................................................... 3 Short on construction and function ......................................................................................................................... 4 Morphology ........................................................................................................................................................ 4 Anatomy and physiology .................................................................................................................................... 5 European freshwater fish species ............................................................................................................................ 6 Immigration and distribution of freshwater fish in western Scandinavia ........................................................... 7 Western immigrants ........................................................................................................................ 8 -
Parasitology Volume 60 60
Advances in Parasitology Volume 60 60 Cover illustration: Echinobothrium elegans from the blue-spotted ribbontail ray (Taeniura lymma) in Australia, a 'classical' hypothesis of tapeworm evolution proposed 2005 by Prof. Emeritus L. Euzet in 1959, and the molecular sequence data that now represent the basis of contemporary phylogenetic investigation. The emergence of molecular systematics at the end of the twentieth century provided a new class of data with which to revisit hypotheses based on interpretations of morphology and life ADVANCES IN history. The result has been a mixture of corroboration, upheaval and considerable insight into the correspondence between genetic divergence and taxonomic circumscription. PARASITOLOGY ADVANCES IN ADVANCES Complete list of Contents: Sulfur-Containing Amino Acid Metabolism in Parasitic Protozoa T. Nozaki, V. Ali and M. Tokoro The Use and Implications of Ribosomal DNA Sequencing for the Discrimination of Digenean Species M. J. Nolan and T. H. Cribb Advances and Trends in the Molecular Systematics of the Parasitic Platyhelminthes P P. D. Olson and V. V. Tkach ARASITOLOGY Wolbachia Bacterial Endosymbionts of Filarial Nematodes M. J. Taylor, C. Bandi and A. Hoerauf The Biology of Avian Eimeria with an Emphasis on Their Control by Vaccination M. W. Shirley, A. L. Smith and F. M. Tomley 60 Edited by elsevier.com J.R. BAKER R. MULLER D. ROLLINSON Advances and Trends in the Molecular Systematics of the Parasitic Platyhelminthes Peter D. Olson1 and Vasyl V. Tkach2 1Division of Parasitology, Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, UK 2Department of Biology, University of North Dakota, Grand Forks, North Dakota, 58202-9019, USA Abstract ...................................166 1. -
The Round Goby Genome Provides Insights Into Mechanisms That May Facilitate Biological Invasions
Adrian-Kalchhauser et al. BMC Biology (2020) 18:11 https://doi.org/10.1186/s12915-019-0731-8 RESEARCH ARTICLE Open Access The round goby genome provides insights into mechanisms that may facilitate biological invasions Irene Adrian-Kalchhauser1,2* , Anders Blomberg3†, Tomas Larsson4†, Zuzana Musilova5†, Claire R. Peart6†, Martin Pippel7†, Monica Hongroe Solbakken8†, Jaanus Suurväli9†, Jean-Claude Walser10†, Joanna Yvonne Wilson11†, Magnus Alm Rosenblad3,12†, Demian Burguera5†, Silvia Gutnik13†, Nico Michiels14†, Mats Töpel2†, Kirill Pankov11†, Siegfried Schloissnig15† and Sylke Winkler7† Abstract Background: Theinvasivebenthicroundgoby(Neogobius melanostomus) is the most successful temperate invasive fish and has spread in aquatic ecosystems on both sides of the Atlantic. Invasive species constitute powerful in situ experimental systems to study fast adaptation and directional selection on short ecological timescales and present promising case studies to understand factors involved the impressive ability of some species to colonize novel environments. We seize the unique opportunity presented by the round goby invasion to study genomic substrates potentially involved in colonization success. Results: We report a highly contiguous long-read-based genome and analyze gene families that we hypothesize to relate to the ability of these fish to deal with novel environments. The analyses provide novel insights from the large evolutionary scale to the small species-specific scale. We describe expansions in specific cytochromeP450enzymes,aremarkablydiverse innate immune system, an ancient duplication in red light vision accompanied by red skin fluorescence, evolutionary patterns of epigenetic regulators, and the presence of osmoregulatory genes that may have contributed to the round goby’s capacity to invade cold and salty waters. A recurring theme across all analyzed gene families is gene expansions. -
Complete Mitochondrial Genome of the Speckled Dace Rhinichthys Osculus, a Widely Distributed Cyprinid Minnow of Western North America
Bock. Published in Mitochondrial DNA Part A> DNA Mapping, Sequencing, and Analysis, 27(6), Oct. 21, 2015: 4416-4418 MITOGENOME ANNOUNCEMENT Complete mitochondrial genome of the speckled dace Rhinichthys osculus, a widely distributed cyprinid minnow of western North America Samantha L. Bock, Morgan M. Malley, and Sean C. Lema Department of Biological Sciences, Center for Coastal Marine Sciences, California Polytechnic State University, San Luis Obispo, CA, USA Abstract Keywords The speckled dace Rhinichthys osculus (order Cypriniformes), also known as the carpita pinta, is Cyprinidae, Cypriniformes, Leuciscinae, a small cyprinid minnow native to western North America. Here, we report the sequencing of mitogenome, mtDNA the full mitochondrial genome (mitogenome) of R. osculus from a male fish collected from the Amargosa River Canyon in eastern California, USA. The assembled mitogenome is 16 658 base pair (bp) nucleotides, and encodes 13 protein-coding genes, and includes both a 12S and a 16S rRNA, 22 tRNAs, and a 985 bp D-loop control region. Mitogenome synteny reflects that of other Ostariophysian fishes with the majority of genes and RNAs encoded on the heavy strand (H-strand) except nd6, tRNA-Gln, tRNA-Ala, tRNA-Asn, tRNA-Cys, tRNA-Tyr, tRNA-Ser, tRNA-Glu, and tRNA - Pro. The availability of this R. osculus mitochondrial genome – the first complete mitogenome within the lineage of Rhinichthys riffle daces – provides a foundation for resolving evolutionary relationships among morphologically differentiated populations of R. osculus. The speckled dace Rhinichthys osculus (Girard, 1856) is a small and Tissue Kit; Qiagen, Valencia, CA) and amplified (GoTaq® fish within the Leuciscinae subfamily of true minnows Long PCR Master Mix, Promega Corp., Madison, WI) using (Cyprinidae, Cypriniformes). -
Cottus Schitsuumsh, a New Species of Sculpin (Scorpaeniformes: Cottidae) in the Columbia River Basin, Idaho-Montana, USA
Zootaxa 3755 (3): 241–258 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3755.3.3 http://zoobank.org/urn:lsid:zoobank.org:pub:5147B3DB-9071-408B-A8D1-B3575ED5806E Cottus schitsuumsh, a new species of sculpin (Scorpaeniformes: Cottidae) in the Columbia River basin, Idaho-Montana, USA MICHAEL LEMOINE1,3, MICHAEL K. YOUNG2, KEVIN S. MCKELVEY2, LISA EBY1, KRISTINE L. PILGRIM2 & MICHAEL K. SCHWARTZ2 1 Wildlife Biology Program, University of Montana, Missoula, Montana 59812, USA 2U.S. Forest Service, Rocky Mountain Research Station, Missoula, Montana 59801, USA 3Corresponding author. E-mail: [email protected] Abstract Fishes of the genus Cottus have long been taxonomically challenging because of morphological similarities among species and their tendency to hybridize, and a number of undescribed species may remain in this genus. We used a combination of genetic and morphological methods to delineate and describe Cottus schitsuumsh, Cedar Sculpin, a new species, from the upper Columbia River basin, Idaho-Montana, USA. Although historically confused with the Shorthead Sculpin (C. confusus), the genetic distance between C. schitsuumsh and C. confusus (4.84–6.29%) suggests these species are distant relatives. Moreover, the two species can be differentiated on the basis of lateral-line pores on the caudal peduncle, head width, and interpelvic width. Cottus schitsuumsh is also distinct from all other Cottus in this region in having a single small, skin-covered, preopercular spine. Haplotypes of mtDNA cytochrome oxidase c subunit 1 of C. schitsuumsh differed from all other members of the genus at three positions, had interspecific genetic distances typical for congeneric fishes (1.61–2.74% to nearest neighbors), and were monophyletic in maximum-likelihood trees. -
Global Conservation Translocation Perspectives: 2021. Case Studies from Around the Globe
Global conservation Global conservation translocation perspectives: 2021 translocation perspectives: 2021 IUCN SSC Conservation Translocation Specialist Group Global conservation translocation perspectives: 2021 Case studies from around the globe Edited by Pritpal S. Soorae IUCN SSC Conservation Translocation Specialist Group (CTSG) i The designation of geographical entities in this book, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of IUCN or any of the funding organizations concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. The views expressed in this publication do not necessarily reflect those of IUCN. IUCN is pleased to acknowledge the support of its Framework Partners who provide core funding: Ministry of Foreign Affairs of Denmark; Ministry for Foreign Affairs of Finland; Government of France and the French Development Agency (AFD); the Ministry of Environment, Republic of Korea; the Norwegian Agency for Development Cooperation (Norad); the Swedish International Development Cooperation Agency (Sida); the Swiss Agency for Development and Cooperation (SDC) and the United States Department of State. Published by: IUCN SSC Conservation Translocation Specialist Group, Environment Agency - Abu Dhabi & Calgary Zoo, Canada. Copyright: © 2021 IUCN, International Union for Conservation of Nature and Natural Resources Reproduction of this publication for educational or other non- commercial purposes is authorized without prior written permission from the copyright holder provided the source is fully acknowledged. Reproduction of this publication for resale or other commercial purposes is prohibited without prior written permission of the copyright holder. Citation: Soorae, P. S. -
Assessment of the Conservation Status of Endemic Sculpin Cottus Haemusi (Cottidae) in the River Vit (Danube Tributary), Northwest Bulgaria E
Knowledge and Management of Aquatic Ecosystems (2011) 403, 10 © ONEMA, 2011 http://www.kmae-journal.org DOI: 10.1051/kmae/2011071 Assessment of the conservation status of endemic sculpin Cottus haemusi (Cottidae) in the river Vit (Danube Tributary), northwest Bulgaria E. Petrova Uzunova(1) Received March 29, 2011 Revised July 14, 2011 Accepted July 25, 2011 ABSTRACT Key-words: Cottus haemusi (Marinov and Dikov, 1986. Acta Zool. Bulg. 3, 18–23) is an Cottus haemusi, endemic fish species that is restricted to the upper tributaries of the river distribution, Vit, Northwest Bulgaria. After its discovery in 1986, no further investigation abundance, of the C. haemusi population has been conducted. The aims of the present size, study were to determine its current population status based on the distri- conservation bution, abundance and size structure of the C. haemusi population and to measures analyse the main environmental parameters of its habitat. Five upland tri- butaries and the main river were examined in low-water periods in 2009 and 2010. Two-pass electrofishing surveys were performed at 14 sites to estimate species presence, abundance and size distribution. C. haemusi was only detected in two tributaries of the river Vit: Kostina and Toplja. The current investigation failed to find the species at previously recorded sites. The total distribution area of this species is estimated to be 16 200 m2. The observed abundance of the Vit sculpin ranged from 5.6 to 8.4 indivi- duals·100 m–2, with a mean of 7.0 individuals·100 m–2. Investigation of the size structure revealed the relatively low contribution of one-summer-old individuals. -
Trematoda: Allocreadiidae) by Means of 28S Ribosomal DNA Sequences
Advances in Bioscience and Biotechnology, 2014, 5, 209-215 ABB http://dx.doi.org/10.4236/abb.2014.53027 Published Online February 2014 (http://www.scirp.org/journal/abb/) Genetic characterization of far eastern species of the genus Crepidostomum (Trematoda: Allocreadiidae) by means of 28S ribosomal DNA sequences Dmitry M. Atopkin1,2*, Marina B. Shedko1 1Lab. Parasitology, Institute of Biology and Soil Science, Far Eastern Branch, Russian Academy of Sciences, Vladivostok, Russia 2Far Eastern Federal University, Vladivostok, Russia Email: *[email protected] Received 14 November 2013; revised 13 January 2014; accepted 26 January 2014 Copyright © 2014 Dmitry M. Atopkin, Marina B. Shedko. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. In accordance of the Creative Commons Attribution License all Copyrights © 2014 are reserved for SCIRP and the owner of the intellectual property Dmitry M. Atopkin, Marina B. Shedko. All Copyright © 2014 are guarded by law and by SCIRP as a guardian. ABSTRACT Trematoda; Digenea; Phylognetic Relationships Genetic divergence and phylogenetic relationships of four species of the genus Crepidostomum Braun, 1900 1. INTRODUCTION sensu Caira, Bogĕa (2005) were revealed using partial Species of the Allocreadiidae are important components sequences of 28S ribosomal RNA gene. Genetic di- of the parasite fauna of the freshwater fishes and their vergence between C. cf. farionis (Muller, 1784) and C. systematics have not been clarified yet. The membership nemachilus Krotov, 1959 was 3.1%, which corres- of these trematodes to either family Allocreadiidae Stos- ponds to the mean value of interspecific divergence sich, 1903 or family Bunoderidae Nicoll, 1914 has been between Crepidostomum species.