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Azorhizobium Doebereinerae Sp. Nov
ARTICLE IN PRESS Systematic and Applied Microbiology 29 (2006) 197–206 www.elsevier.de/syapm Azorhizobium doebereinerae sp. Nov. Microsymbiont of Sesbania virgata (Caz.) Pers.$ Fa´tima Maria de Souza Moreiraa,Ã, Leonardo Cruzb,Se´rgio Miana de Fariac, Terence Marshd, Esperanza Martı´nez-Romeroe,Fa´bio de Oliveira Pedrosab, Rosa Maria Pitardc, J. Peter W. Youngf aDepto. Cieˆncia do solo, Universidade Federal de Lavras, C.P. 3037 , 37 200–000, Lavras, MG, Brazil bUniversidade Federal do Parana´, C.P. 19046, 81513-990, PR, Brazil cEmbrapa Agrobiologia, antiga estrada Rio, Sa˜o Paulo km 47, 23 851-970, Serope´dica, RJ, Brazil dCenter for Microbial Ecology, Michigan State University, MI 48824, USA eCentro de Investigacio´n sobre Fijacio´n de Nitro´geno, Universidad Nacional Auto´noma de Mexico, Apdo Postal 565-A, Cuernavaca, Mor, Me´xico fDepartment of Biology, University of York, PO Box 373, York YO10 5YW, UK Received 18 August 2005 Abstract Thirty-four rhizobium strains were isolated from root nodules of the fast-growing woody native species Sesbania virgata in different regions of southeast Brazil (Minas Gerais and Rio de Janeiro States). These isolates had cultural characteristics on YMA quite similar to Azorhizobium caulinodans (alkalinization, scant extracellular polysaccharide production, fast or intermediate growth rate). They exhibited a high similarity of phenotypic and genotypic characteristics among themselves and to a lesser extent with A. caulinodans. DNA:DNA hybridization and 16SrRNA sequences support their inclusion in the genus Azorhizobium, but not in the species A. caulinodans. The name A. doebereinerae is proposed, with isolate UFLA1-100 ( ¼ BR5401, ¼ LMG9993 ¼ SEMIA 6401) as the type strain. -
Article-Associated Bac- Teria and Colony Isolation in Soft Agar Medium for Bacteria Unable to Grow at the Air-Water Interface
Biogeosciences, 8, 1955–1970, 2011 www.biogeosciences.net/8/1955/2011/ Biogeosciences doi:10.5194/bg-8-1955-2011 © Author(s) 2011. CC Attribution 3.0 License. Diversity of cultivated and metabolically active aerobic anoxygenic phototrophic bacteria along an oligotrophic gradient in the Mediterranean Sea C. Jeanthon1,2, D. Boeuf1,2, O. Dahan1,2, F. Le Gall1,2, L. Garczarek1,2, E. M. Bendif1,2, and A.-C. Lehours3 1Observatoire Oceanologique´ de Roscoff, UMR7144, INSU-CNRS – Groupe Plancton Oceanique,´ 29680 Roscoff, France 2UPMC Univ Paris 06, UMR7144, Adaptation et Diversite´ en Milieu Marin, Station Biologique de Roscoff, 29680 Roscoff, France 3CNRS, UMR6023, Microorganismes: Genome´ et Environnement, Universite´ Blaise Pascal, 63177 Aubiere` Cedex, France Received: 21 April 2011 – Published in Biogeosciences Discuss.: 5 May 2011 Revised: 7 July 2011 – Accepted: 8 July 2011 – Published: 20 July 2011 Abstract. Aerobic anoxygenic phototrophic (AAP) bac- detected in the eastern basin, reflecting the highest diver- teria play significant roles in the bacterioplankton produc- sity of pufM transcripts observed in this ultra-oligotrophic tivity and biogeochemical cycles of the surface ocean. In region. To our knowledge, this is the first study to document this study, we applied both cultivation and mRNA-based extensively the diversity of AAP isolates and to unveil the ac- molecular methods to explore the diversity of AAP bacte- tive AAP community in an oligotrophic marine environment. ria along an oligotrophic gradient in the Mediterranean Sea By pointing out the discrepancies between culture-based and in early summer 2008. Colony-forming units obtained on molecular methods, this study highlights the existing gaps in three different agar media were screened for the production the understanding of the AAP bacteria ecology, especially in of bacteriochlorophyll-a (BChl-a), the light-harvesting pig- the Mediterranean Sea and likely globally. -
Development of Monitoring Technology for Environmental Radioactivity
KAERI/RR-2037/99 KR0000197 Development of Environmental Radiation Protection Technology Development of Monitoring Technology for Environmental Radioactivity 31/40 Please be aware that all of the Missing Pages in this document were originally blank pages KAERI/RR-2037/99 2=1 # a Development of Environmental Radiation Protection Technology Development of Monitoring Technology for Environmental Radioactivity 2000^ : 0| o| I. II- EML ^-A>^ B \f $14. III. o) 4^0. 9Sr Tc-99 )14^H Tc-991- Tc-95m ^^^>* if?!: 7l^^ TBP TBP ^-^^i TEVA ?l^-^ 7] (Quantulus 1220)-!: 44^ *1^^ Pu-241 ^1-Jl £^7l^ 6}-g-«l-^ ^^^ PSA ^^1 Pu-241 a^^l^^: ^1-g-^^ FOM (figure of-merit)7> Pu-241 31# ^fl^l- S^^>^4. FOM° (Ultima gold-AB) ^4^ ^^^^4. S^ ^ 2]^^-€ Pu-241 ^^£ Pu-241 5H ^^^ PERALS® -g-nfl PERALS® PSA 7]^^; 7>*1 ^^]^^-7)]^7l(Quantulus 1220™, Wallac Rn-222 ^ Ra Rn-222 2. on-line «H3-3|i£ £^7l#-ir 7fl#§|-7] $«H ion chromatography£f <SH^% U-A>^^#7|1- ^l-g-^ «j-A}^ ^1#7]1- 7fl^Sl-^4. ion chromatographyS £|M 4^ 14^4^ ^^ #4^ 3. : 7fl#§V7| ^§1] Pu-242 ^«fi^ pH U-232, Th-229 ^ Am-243 Talvitie IV. (Sr-Spec)i 92 % oR1"^ fe^ ^t^: ^.$1^ £lfe Ba, Ca, Y 4. 111 7} %$\ £#*l|3. DC18C6 0.1 Mi tflsfl DNNS 25 mM ^£7} JL 6I *H 90 %°]$£\ ^S^-f- 4i^ > 1 : 5 - 1 ^^4J^A], ^ aflui*l<g<3 (20 - 500 keV) ^A^ ^S 90 % °1&JL 90Y^ 34.2 %, ne)jL 89Sr^r 50.6 % ^1-1^1^^(500 - 1400 keV)iAi^ 7fl#^^^: ^Sr0] 1.7 %, 90Y7} 49.7 %, nelJL 89Sr^l 44.9 % 3£t- .^-^4. -
Anaerobic Degradation of Methanethiol in a Process for Liquefied Petroleum Gas (LPG) Biodesulfurization
Anaerobic degradation of methanethiol in a process for Liquefied Petroleum Gas (LPG) biodesulfurization Promotoren Prof. dr. ir. A.J.H. Janssen Hoogleraar in de Biologische Gas- en waterreiniging Prof. dr. ir. A.J.M. Stams Persoonlijk hoogleraar bij het laboratorium voor Microbiologie Copromotor Prof. dr. ir. P.N.L. Lens Hoogleraar in de Milieubiotechnologie UNESCO-IHE, Delft Samenstelling promotiecommissie Prof. dr. ir. R.H. Wijffels Wageningen Universiteit, Nederland Dr. ir. G. Muyzer TU Delft, Nederland Dr. H.J.M. op den Camp Radboud Universiteit, Nijmegen, Nederland Prof. dr. ir. H. van Langenhove Universiteit Gent, België Dit onderzoek is uitgevoerd binnen de onderzoeksschool SENSE (Socio-Economic and Natural Sciences of the Environment) Anaerobic degradation of methanethiol in a process for Liquefied Petroleum Gas (LPG) biodesulfurization R.C. van Leerdam Proefschrift ter verkrijging van de graad van doctor op gezag van de rector magnificus van Wageningen Universiteit Prof. dr. M.J. Kropff in het openbaar te verdedigen op maandag 19 november 2007 des namiddags te vier uur in de Aula Van Leerdam, R.C., 2007. Anaerobic degradation of methanethiol in a process for Liquefied Petroleum Gas (LPG) biodesulfurization. PhD-thesis Wageningen University, Wageningen, The Netherlands – with references – with summaries in English and Dutch ISBN: 978-90-8504-787-2 Abstract Due to increasingly stringent environmental legislation car fuels have to be desulfurized to levels below 10 ppm in order to minimize negative effects on the environment as sulfur-containing emissions contribute to acid deposition (‘acid rain’) and to reduce the amount of particulates formed during the burning of the fuel. Moreover, low sulfur specifications are also needed to lengthen the lifetime of car exhaust catalysts. -
Genome Characteristics of a Generalist Marine Bacterial Lineage
The ISME Journal (2010), 1–15 & 2010 International Society for Microbial Ecology All rights reserved 1751-7362/10 $32.00 www.nature.com/ismej ORIGINAL ARTICLE Genome characteristics of a generalist marine bacterial lineage Ryan J Newton1, Laura E Griffin1, Kathy M Bowles1, Christof Meile1, Scott Gifford1, Carrie E Givens1, Erinn C Howard1, Eric King1, Clinton A Oakley2, Chris R Reisch3, Johanna M Rinta-Kanto1, Shalabh Sharma1, Shulei Sun1, Vanessa Varaljay3, Maria Vila-Costa1,4, Jason R Westrich5 and Mary Ann Moran1 1Department of Marine Sciences, University of Georgia, Athens, GA, USA; 2Department of Plant Biology, University of Georgia, Athens, GA, USA; 3Department of Microbiology, University of Georgia, Athens, GA, USA; 4Group of Limnology-Department of Continental Ecology, Centre d’Estudis Avanc¸ats de Blanes-CSIS, Catalunya, Spain and 5Odum School of Ecology, University of Georgia, Athens, GA, USA Members of the marine Roseobacter lineage have been characterized as ecological generalists, suggesting that there will be challenges in assigning well-delineated ecological roles and biogeochemical functions to the taxon. To address this issue, genome sequences of 32 Roseobacter isolates were analyzed for patterns in genome characteristics, gene inventory, and individual gene/ pathway distribution using three predictive frameworks: phylogenetic relatedness, lifestyle strategy and environmental origin of the isolate. For the first framework, a phylogeny containing five deeply branching clades was obtained from a concatenation of 70 conserved single-copy genes. Somewhat surprisingly, phylogenetic tree topology was not the best model for organizing genome characteristics or distribution patterns of individual genes/pathways, although it provided some predictive power. The lifestyle framework, established by grouping isolates according to evidence for heterotrophy, photoheterotrophy or autotrophy, explained more of the gene repertoire in this lineage. -
Which Organisms Are Used for Anti-Biofouling Studies
Table S1. Semi-systematic review raw data answering: Which organisms are used for anti-biofouling studies? Antifoulant Method Organism(s) Model Bacteria Type of Biofilm Source (Y if mentioned) Detection Method composite membranes E. coli ATCC25922 Y LIVE/DEAD baclight [1] stain S. aureus ATCC255923 composite membranes E. coli ATCC25922 Y colony counting [2] S. aureus RSKK 1009 graphene oxide Saccharomycetes colony counting [3] methyl p-hydroxybenzoate L. monocytogenes [4] potassium sorbate P. putida Y. enterocolitica A. hydrophila composite membranes E. coli Y FESEM [5] (unspecified/unique sample type) S. aureus (unspecified/unique sample type) K. pneumonia ATCC13883 P. aeruginosa BAA-1744 composite membranes E. coli Y SEM [6] (unspecified/unique sample type) S. aureus (unspecified/unique sample type) graphene oxide E. coli ATCC25922 Y colony counting [7] S. aureus ATCC9144 P. aeruginosa ATCCPAO1 composite membranes E. coli Y measuring flux [8] (unspecified/unique sample type) graphene oxide E. coli Y colony counting [9] (unspecified/unique SEM sample type) LIVE/DEAD baclight S. aureus stain (unspecified/unique sample type) modified membrane P. aeruginosa P60 Y DAPI [10] Bacillus sp. G-84 LIVE/DEAD baclight stain bacteriophages E. coli (K12) Y measuring flux [11] ATCC11303-B4 quorum quenching P. aeruginosa KCTC LIVE/DEAD baclight [12] 2513 stain modified membrane E. coli colony counting [13] (unspecified/unique colony counting sample type) measuring flux S. aureus (unspecified/unique sample type) modified membrane E. coli BW26437 Y measuring flux [14] graphene oxide Klebsiella colony counting [15] (unspecified/unique sample type) P. aeruginosa (unspecified/unique sample type) graphene oxide P. aeruginosa measuring flux [16] (unspecified/unique sample type) composite membranes E. -
Kinetics of the Ozonation of Dimethyl Sulfide in the Gas Phase
University of Montana ScholarWorks at University of Montana Graduate Student Theses, Dissertations, & Professional Papers Graduate School 1973 Kinetics of the ozonation of dimethyl sulfide in the gas phase Robert John Moody The University of Montana Follow this and additional works at: https://scholarworks.umt.edu/etd Let us know how access to this document benefits ou.y Recommended Citation Moody, Robert John, "Kinetics of the ozonation of dimethyl sulfide in the gas phase" (1973). Graduate Student Theses, Dissertations, & Professional Papers. 8125. https://scholarworks.umt.edu/etd/8125 This Thesis is brought to you for free and open access by the Graduate School at ScholarWorks at University of Montana. It has been accepted for inclusion in Graduate Student Theses, Dissertations, & Professional Papers by an authorized administrator of ScholarWorks at University of Montana. For more information, please contact [email protected]. KINETICS OF THE OZONATION OF DIMETHYL SOLFIDB IN THE GAS PHASE by Robert J, Moody B.S., University of Montana, 1968 Presented in partial fulfillment of the requirements for the degree of Master of Science UNIVERSITY OF MONTANA 1973 Approved by: Chairman, Board of Examiners Deanf 'Graduait Schoo Date 7 Reproduced with permission of the copyright owner. Further reproduction prohibited without permission. UMI Number: EP38926 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. -
MSM) Levels in Human Plasma Ling Lin1,2*, Dejian Ma1, Richard J
ition & F tr oo OPEN ACCESS Freely available online u d N f S o c l i e a n n c r e u s o J ISSN: 2155-9600 Journal of Nutrition & Food Sciences Research Article Development and Application of an LC-MS/MS Method for Determining Methylsulfonylmethane (MSM) levels in Human Plasma Ling Lin1,2*, Dejian Ma1, Richard J. Bloomer3, Matthew Butawan3 , Webb A. Smith4,5, Charles R. Yates6 1Department of Pharmaceutical Sciences, University of Tennessee College of Pharmacy, Memphis, TN, USA; 2Regenerative Medicine Research Center, West China Hospital, Sichuan University, Chengdu, Sichuan 610041, P. R. China; 3Center for Nutraceutical and Dietary Supplement Research, School of Health Studies, University of Memphis, Memphis, TN, USA Savar; 4Department of Pediatrics, University of Tennessee College of Medicine, Memphis, TN, USA; 5Children’s Foundation Research Institute, LeBonheur Children’s Hospital, Memphis, TN, USA; 6The National Center for Natural Products Research, Oxford, MS, USA ABSTRACT Methylsulfonylmethane (MSM) isan organosulfur phytochemical widely used as a dietary supplement carrying structure/function claims that includethe promotion of joint health. Untargeted metabolomics studies using nuclear magnetic resonance (NMR) have identified MSM in plasma and urine. However, MS-based methodology is more suitable for pharmacokinetic studies designed to explore MSM’s concentration-effect relationship for purposes of establishing dosing guidelines. To address this deficiency, an LC-MS/MS method using MSM, deuterated MSM (MSM-d6, internal standard), and liquid-liquid extraction was developed and validated in accordance with international guidelines. The method proved well-suited for determining MSM levels in human plasma following chronic oral administration (1, 2, or 3 grams daily) for four weeks. -
Aqueous Phase Ozonation of Methanethiol and Dimethyl Disulfide
University of Montana ScholarWorks at University of Montana Graduate Student Theses, Dissertations, & Professional Papers Graduate School 1973 Aqueous phase ozonation of methanethiol and dimethyl disulfide Lawrence Roman Schmitz The University of Montana Follow this and additional works at: https://scholarworks.umt.edu/etd Let us know how access to this document benefits ou.y Recommended Citation Schmitz, Lawrence Roman, "Aqueous phase ozonation of methanethiol and dimethyl disulfide" (1973). Graduate Student Theses, Dissertations, & Professional Papers. 1586. https://scholarworks.umt.edu/etd/1586 This Thesis is brought to you for free and open access by the Graduate School at ScholarWorks at University of Montana. It has been accepted for inclusion in Graduate Student Theses, Dissertations, & Professional Papers by an authorized administrator of ScholarWorks at University of Montana. For more information, please contact [email protected]. THE AQUEOUS PHASE OZONATION OF METHANETHIOL AND DIMETHYL DISULFIDE By Lawrence R. Schmitz B.S,, Saint John's University, 1970 Presented in partial fulfillment of the requirements for the degree of Master of Science UNIVERSITY OF MDNTANA 1973 Approved by; /•- /•' Chairnian, Board of Examiners .R„„ Deaj^ Graduate School lkd ^ / '^ 7 3 Date UMI Number: EP36441 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy subnnitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. Oiss«rtation PuUiahing UMI EP36441 Published by ProQuest LLC (2012). Copyright in the Dissertation held by the Author. -
Conductivity, Viscosity, Spectroscopic Properties of Organic Sulfonic Acid Solutions in Ionic Liquids
chemengineering Article Conductivity, Viscosity, Spectroscopic Properties of Organic Sulfonic Acid solutions in Ionic Liquids Anh T. Tran, Jay Tomlin, Phuoc H. Lam, Brittany L. Stinger, Alexandra D. Miller, Dustin J. Walczyk, Omar Cruz, Timothy D. Vaden * and Lei Yu * Department of Chemistry and Biochemistry, Rowan University, Glassboro, NJ 08028, USA; [email protected] (A.T.T.); [email protected] (J.T.); [email protected] (P.H.L.); [email protected] (B.L.S.); [email protected] (A.D.M.); [email protected] (D.J.W.); [email protected] (O.C.) * Correspondence: [email protected] (T.D.V.); [email protected] (L.Y.) Received: 14 June 2019; Accepted: 25 September 2019; Published: 1 October 2019 Abstract: Sulfonic acids in ionic liquids (ILs) are used as catalysts, electrolytes, and solutions for metal extraction. The sulfonic acid ionization states and the solution acid/base properties are critical for these applications. Methane sulfonic acid (MSA) and camphor sulfonic acid (CSA) are dissolved in several IL solutions with and without bis(trifluoromethanesulfonyl)imine (HTFSI). The solutions demonstrated higher conductivities and lower viscosities. Through calorimetry and temperature-dependent conductivity analysis, we found that adding MSA to the IL solution may change both the ion migration activation energy and the number of “free” charge carriers. However, no significant acid ionization or proton transfer was observed in the IL solutions. Raman and IR spectroscopy with computational simulations suggest that the HTFSI forms dimers in the solutions with an N-H-N “bridged” structure, while MSA does not perturb this hydrogen ion solvation structure in the IL solutions. -
Evidence That Dimethyl Sulfide Facilitates a Tritrophic Mutualism Between Marine Primary Producers and Top Predators
Evidence that dimethyl sulfide facilitates a tritrophic mutualism between marine primary producers and top predators Matthew S. Savocaa,b and Gabrielle A. Nevitta,b,1 aGraduate Group in Ecology, University of California, Davis, CA 95616; and bDepartment of Neurobiology, Physiology, and Behavior, College of Biological Sciences, University of California, Davis, CA 95616 Edited by May R. Berenbaum, University of Illinois at Urbana–Champaign, Urbana, IL, and approved February 3, 2014 (received for review September 10, 2013) Tritrophic mutualistic interactions have been best studied in plant– in this regard, and many species have been shown to detect and insect systems. During these interactions, plants release volatiles respond to biogenic concentrations of DMS in foraging contexts in response to herbivore damage, which, in turn, facilitates pre- (24, 25). Members of this order share highly pelagic lifestyles and dation on primary consumers or benefits the primary producer by are central-place foragers associated with land only during in- providing nutrients. Here we explore a similar interaction in the cubation and chick rearing (26). Procellariiformes routinely range Southern Ocean food web, where soluble iron limits primary pro- thousands of kilometers to forage (27) and have large olfactory ductivity. Dimethyl sulfide has been studied in the context of bulbs compared with other avian clades (28), and some species global climate regulation and is an established foraging cue for marine top predators. We present evidence that procellariiform have been shown to track their prey using their sense of smell (29). seabird species that use dimethyl sulfide as a foraging cue selec- Some procellariiform species are attracted to DMS, whereas others tively forage on phytoplankton grazers. -
Sagittula Stellata Gen. Nov., Sp. Nov., a Lignin-Transforming Bacterium from a Coastal Environment
INTERNATIONALJOURNAL OF SYSTEMATICBACTERIOLOGY, July 1997, p. 773-780 Vol. 47, No. 3 0020-7713/97/$04.00+0 Copyright 0 1997, International Union of Microbiological Societies Sagittula stellata gen. nov., sp. nov., a Lignin-Transforming Bacterium from a Coastal Environment J. M. GONZALEZ,' F. MAYER,2 M. A. MORAN,193R. E. HODSON,1,3 AND W. B. WHITMAN1,3* Department of Microbiology,' and Department of Marine Sciences and Institute of Ecology, University of Georgia, Athens, Georgia 30602, and Institut fur Mikrobiologie, Universitat Gottingen, 37077 Gottingen, Germany2 A numerically important member of marine enrichment cultures prepared with lignin-rich, pulp mill emuent was isolated. This bacterium was gram negative and rod shaped, did not form spores, and was strictly aerobic. The surfaces of its cells were covered by blebs or vesicles and polysaccharide fibrils. Each cell also had a holdfast structure at one pole. The cells formed rosettes and aggregates. During growth in the presence of lignocellulose or cellulose particles, cells attached to the surfaces of the particles. The bacterium utilized a variety of monosaccharides, disaccharides, amino acids, and volatile fatty acids for growth. It hydrolyzed cellulose, and synthetic lignin preparations were partially solubilized and mineralized. As determined by 16s rRNA analysis, the isolate was a member of the (Y subclass of the phylum Proteobacteria and was related to the genus Roseobacter. A signature secondary structure of the 16s rRNA is proposed. The guanine-plus-cytosine content of the genomic DNA was 65.0 mol%. On the basis of the results of 16s rRNA sequence and phenotypic characterizations, the isolate was sufficiently different to consider it a member of a new genus.