Cold Seeps of the Deep Gulf of Mexico: Community Structure and Biogeographic Comparisons to Atlantic Equatorial Belt Seep Communities
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Adaptation to Deep-Sea Chemosynthetic Environments As Revealed by Mussel Genomes
ARTICLES PUBLISHED: 3 APRIL 2017 | VOLUME: 1 | ARTICLE NUMBER: 0121 Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes Jin Sun1, 2, Yu Zhang3, Ting Xu2, Yang Zhang4, Huawei Mu2, Yanjie Zhang2, Yi Lan1, Christopher J. Fields5, Jerome Ho Lam Hui6, Weipeng Zhang1, Runsheng Li2, Wenyan Nong6, Fiona Ka Man Cheung6, Jian-Wen Qiu2* and Pei-Yuan Qian1, 7* Hydrothermal vents and methane seeps are extreme deep-sea ecosystems that support dense populations of specialized macro benthos such as mussels. But the lack of genome information hinders the understanding of the adaptation of these ani- mals to such inhospitable environments. Here we report the genomes of a deep-sea vent/seep mussel (Bathymodiolus plati- frons) and a shallow-water mussel (Modiolus philippinarum). Phylogenetic analysis shows that these mussel species diverged approximately 110.4 million years ago. Many gene families, especially those for stabilizing protein structures and removing toxic substances from cells, are highly expanded in B. platifrons, indicating adaptation to extreme environmental conditions. The innate immune system of B. platifrons is considerably more complex than that of other lophotrochozoan species, including M. philippinarum, with substantial expansion and high expression levels of gene families that are related to immune recognition, endocytosis and caspase-mediated apoptosis in the gill, revealing presumed genetic adaptation of the deep-sea mussel to the presence of its chemoautotrophic endosymbionts. A follow-up metaproteomic analysis of the gill of B. platifrons shows metha- notrophy, assimilatory sulfate reduction and ammonia metabolic pathways in the symbionts, providing energy and nutrients, which allow the host to thrive. Our study of the genomic composition allowing symbiosis in extremophile molluscs gives wider insights into the mechanisms of symbiosis in other organisms such as deep-sea tubeworms and giant clams. -
Geologists Suggest Horseshoe Abyssal Plain May Be Start of a Subduction Zone 8 May 2019, by Bob Yirka
Geologists suggest Horseshoe Abyssal Plain may be start of a subduction zone 8 May 2019, by Bob Yirka against one another. Over by the Iberian Peninsula, the opposite appears to be happening—the African and Eurasian plates are pulling apart as the former creeps east toward the Americas. Duarte noted that back in 2012, other researchers conducting seismic wave tests found what appeared to be a dense mass of unknown material beneath the epicenter of the 1969 quake. Some in the field suggested it could be the start of a subduction zone. Then, last year, another team conducted high-resolution imaging of the area and also found evidence of the mass, confirming that it truly existed. Other research has shown that the area just above the mass experiences routine tiny earthquakes. Duarte suggests the evidence to date indicates that the bottom of the plate is peeling away. This could happen, he explained, due to serpentinization in which water percolates through plate fractures and reacts with material beneath the surface, resulting A composite image of the Western hemisphere of the in the formation of soft green minerals. The soft Earth. Credit: NASA mineral layer, he suggests, is peeling away. And if that is the case, then it is likely the area is in the process of creating a subduction zone. He reports that he and his team members built models of their A team of geologists led by João Duarte gave a ideas and that they confirmed what he suspected. presentation at this past month's European The earthquakes were the result of the process of Geosciences Union meeting that included a birthing a new subduction zone. -
The Zinc-Mediated Sulfide-Binding Mechanism of Hydrothermal Vent Tubeworm 400-Kda Hemoglobin
Cah. Biol. Mar. (2006) 47 : 371-377 The zinc-mediated sulfide-binding mechanism of hydrothermal vent tubeworm 400-kDa hemoglobin Jason F. FLORES1* and Stéphane M. HOURDEZ2 (1) Department of Biology, The Pennsylvania State University *Corresponding author: The University of North Carolina at Charlotte, Department of Biology, 9201 University City Boulevard, Charlotte, NC 28223, USA, FAX: 704-687-3128, E-mail: [email protected] (2) Université Pierre & Marie Curie-Paris 6, CNRS-UMR 7144 AD2M, Equipe Ecophysiologie Adaptation et Evolution Moleculaires, Station Biologique de Roscoff, 29680 Roscoff, France Abstract: Hydrothermal vent and cold seep tubeworms possess two hemoglobin (Hb) types, a 3600-kDa hexagonal bilayer Hb as well as a 400-kDa spherical Hb. Both Hbs can reversibly and simultaneously bind and transport oxygen and hydrogen sulfide used by the worm’s endosymbiotic bacteria to fix carbon. The vestimentiferan 400-kDa Hb has been shown to consist of 24 polypeptide chains and 12 zinc ions that are bound to specific amino acids within the six A2 globin chains of the molecule. Flores et al. (2005) determined that the ligated zinc ions were directly involved in the sulfide binding mechanism of this Hb. This discovery contradicted previous work suggesting that free-cysteine residues were the sole sulfide binding mechanism of the 400-kDa Hb. In the present study, we investigated the effects of acidic pH pretreatment and zinc chelator concentrations on the binding of sulfide by the Hb. We show that acidic pH pretreatment, as well as NEM capping of free-cysteines, does not affect sulfide binding by the purified Hb. -
EXPLORING DEEP SEA HYDROTHERMAL VENTS on EARTH and OCEAN WORLDS. P. Sobron1,2, L. M. Barge3, the Invader Team. 1Impossible Sensing, St
52nd Lunar and Planetary Science Conference 2021 (LPI Contrib. No. 2548) 2505.pdf EXPLORING DEEP SEA HYDROTHERMAL VENTS ON EARTH AND OCEAN WORLDS. P. Sobron1,2, L. M. Barge3, the InVADER Team. 1Impossible Sensing, St. Louis, MO ([email protected]) 2SETI Institute, Mtn. View, CA, , 3Jet Propulsion Laboratory, Pasadena, CA The Mission: InVADER (In-situ Vent Analysis precipitates showing exposed minerals and organic Divebot for Exobiology Research, Figure 4.1, content. The UNOLS ROV will use our coring tool and https://invader-mission.org/) is NASA’s most advanced its own manipulator and cameras to take ground truth subsea sensing payload, a tightly integrated imaging and samples as part of the InVADER deplotment. laser Raman spectroscopy/laser-induced breakdown In contrast to existing methods, InVADER allows spectroscopy/laser induced native fluorescence in-situ, autonomous, non-destructive measurements of instrument capable of in-situ, rapid, long-term these vent characteristics. InVADER will fill these gaps, underwater analyses of vent fluid and precipitates. and advance readiness in vent exploration on Earth and Such analyses are critical for finding and studying Ocean Worlds by simplifying operational strategies for life and life’s precursors at vent systems on Ocean identifying and characterizing seafloor environments. Worlds. To demonstrate the scientific potential and We will use statistical analysis tools for the fusion of functionality of the instrument, in July 2021 our team multi-sensor datasets, and develop real-time science will deploy InVADER on the Ocean Observatories data evaluation and payload control routines to Initiative’s (OOI) Regional Cabled Array (RCA), a establish, and then validate, adaptive science operations power/data distribution network off the Oregon coast, at strategies that maximize science return in a mission-like the underwater hydrothermal systems of Axial scenario. -
Significant Dissipation of Tidal Energy in the Deep Ocean Inferred from Satellite Altimeter Data
letters to nature 3. Rein, M. Phenomena of liquid drop impact on solid and liquid surfaces. Fluid Dynamics Res. 12, 61± water is created at high latitudes12. It has thus been suggested that 93 (1993). much of the mixing required to maintain the abyssal strati®cation, 4. Fukai, J. et al. Wetting effects on the spreading of a liquid droplet colliding with a ¯at surface: experiment and modeling. Phys. Fluids 7, 236±247 (1995). and hence the large-scale meridional overturning, occurs at 5. Bennett, T. & Poulikakos, D. Splat±quench solidi®cation: estimating the maximum spreading of a localized `hotspots' near areas of rough topography4,16,17. Numerical droplet impacting a solid surface. J. Mater. Sci. 28, 963±970 (1993). modelling studies further suggest that the ocean circulation is 6. Scheller, B. L. & Bous®eld, D. W. Newtonian drop impact with a solid surface. Am. Inst. Chem. Eng. J. 18 41, 1357±1367 (1995). sensitive to the spatial distribution of vertical mixing . Thus, 7. Mao, T., Kuhn, D. & Tran, H. Spread and rebound of liquid droplets upon impact on ¯at surfaces. Am. clarifying the physical mechanisms responsible for this mixing is Inst. Chem. Eng. J. 43, 2169±2179, (1997). important, both for numerical ocean modelling and for general 8. de Gennes, P. G. Wetting: statics and dynamics. Rev. Mod. Phys. 57, 827±863 (1985). understanding of how the ocean works. One signi®cant energy 9. Hayes, R. A. & Ralston, J. Forced liquid movement on low energy surfaces. J. Colloid Interface Sci. 159, 429±438 (1993). source for mixing may be barotropic tidal currents. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Microbial Community and Geochemical Analyses of Trans-Trench Sediments for Understanding the Roles of Hadal Environments
The ISME Journal (2020) 14:740–756 https://doi.org/10.1038/s41396-019-0564-z ARTICLE Microbial community and geochemical analyses of trans-trench sediments for understanding the roles of hadal environments 1 2 3,4,9 2 2,10 2 Satoshi Hiraoka ● Miho Hirai ● Yohei Matsui ● Akiko Makabe ● Hiroaki Minegishi ● Miwako Tsuda ● 3 5 5,6 7 8 2 Juliarni ● Eugenio Rastelli ● Roberto Danovaro ● Cinzia Corinaldesi ● Tomo Kitahashi ● Eiji Tasumi ● 2 2 2 1 Manabu Nishizawa ● Ken Takai ● Hidetaka Nomaki ● Takuro Nunoura Received: 9 August 2019 / Revised: 20 November 2019 / Accepted: 28 November 2019 / Published online: 11 December 2019 © The Author(s) 2019. This article is published with open access Abstract Hadal trench bottom (>6000 m below sea level) sediments harbor higher microbial cell abundance compared with adjacent abyssal plain sediments. This is supported by the accumulation of sedimentary organic matter (OM), facilitated by trench topography. However, the distribution of benthic microbes in different trench systems has not been well explored yet. Here, we carried out small subunit ribosomal RNA gene tag sequencing for 92 sediment subsamples of seven abyssal and seven hadal sediment cores collected from three trench regions in the northwest Pacific Ocean: the Japan, Izu-Ogasawara, and fi 1234567890();,: 1234567890();,: Mariana Trenches. Tag-sequencing analyses showed speci c distribution patterns of several phyla associated with oxygen and nitrate. The community structure was distinct between abyssal and hadal sediments, following geographic locations and factors represented by sediment depth. Co-occurrence network revealed six potential prokaryotic consortia that covaried across regions. Our results further support that the OM cycle is driven by hadal currents and/or rapid burial shapes microbial community structures at trench bottom sites, in addition to vertical deposition from the surface ocean. -
Ocean-Climate.Org
ocean-climate.org THE INTERACTIONS BETWEEN OCEAN AND CLIMATE 8 fact sheets WITH THE HELP OF: Authors: Corinne Bussi-Copin, Xavier Capet, Bertrand Delorme, Didier Gascuel, Clara Grillet, Michel Hignette, Hélène Lecornu, Nadine Le Bris and Fabrice Messal Coordination: Nicole Aussedat, Xavier Bougeard, Corinne Bussi-Copin, Louise Ras and Julien Voyé Infographics: Xavier Bougeard and Elsa Godet Graphic design: Elsa Godet CITATION OCEAN AND CLIMATE, 2016 – Fact sheets, Second Edition. First tome here: www.ocean-climate.org With the support of: ocean-climate.org HOW DOES THE OCEAN WORK? OCEAN CIRCULATION..............................………….....………................................……………….P.4 THE OCEAN, AN INDICATOR OF CLIMATE CHANGE...............................................…………….P.6 SEA LEVEL: 300 YEARS OF OBSERVATION.....................……….................................…………….P.8 The definition of words starred with an asterisk can be found in the OCP little dictionnary section, on the last page of this document. 3 ocean-climate.org (1/2) OCEAN CIRCULATION Ocean circulation is a key regulator of climate by storing and transporting heat, carbon, nutrients and freshwater all around the world . Complex and diverse mechanisms interact with one another to produce this circulation and define its properties. Ocean circulation can be conceptually divided into two Oceanic circulation is very sensitive to the global freshwater main components: a fast and energetic wind-driven flux. This flux can be described as the difference between surface circulation, and a slow and large density-driven [Evaporation + Sea Ice Formation], which enhances circulation which dominates the deep sea. salinity, and [Precipitation + Runoff + Ice melt], which decreases salinity. Global warming will undoubtedly lead Wind-driven circulation is by far the most dynamic. to more ice melting in the poles and thus larger additions Blowing wind produces currents at the surface of the of freshwaters in the ocean at high latitudes. -
New Records of Three Deep-Sea Bathymodiolus Mussels (Bivalvia: Mytilida: Mytilidae) from Hydrothermal Vent and Cold Seeps in Taiwan
352 Journal of Marine Science and Technology, Vol. 27, No. 4, pp. 352-358 (2019) DOI: 10.6119/JMST.201908_27(4).0006 NEW RECORDS OF THREE DEEP-SEA BATHYMODIOLUS MUSSELS (BIVALVIA: MYTILIDA: MYTILIDAE) FROM HYDROTHERMAL VENT AND COLD SEEPS IN TAIWAN Meng-Ying Kuo1, Dun- Ru Kang1, Chih-Hsien Chang2, Chia-Hsien Chao1, Chau-Chang Wang3, Hsin-Hung Chen3, Chih-Chieh Su4, Hsuan-Wien Chen5, Mei-Chin Lai6, Saulwood Lin4, and Li-Lian Liu1 Key words: new record, Bathymodiolus, deep-sea, hydrothermal vent, taiwanesis (von Cosel, 2008) is the only reported species of cold seep, Taiwan. this genus from Taiwan. It was collected from hydrothermal vents near Kueishan Islet off the northeast coast of Taiwan at depths of 200-355 m. ABSTRACT Along with traditional morphological classification, mo- The deep sea mussel genus, Bathymodiolus Kenk & Wilson, lecular techniques are commonly used to study the taxonomy 1985, contains 31 species, worldwide. Of which, one endemic and phylogenetic relationships of deep sea mussels. Recently, species (Bathymodiolus taiwanesis) was reported from Taiwan the complete mitochondrial genomes have been sequenced (MolluscaBase, 2018). Herein, based on the mitochondrial COI from mussels of Bathymodiolus japonicus, B. platifrons and results, we present 3 new records of the Bathymodiolus species B. septemdierum (Ozawa et al., 2017). Even more, the whole from Taiwan, namely Bathymodiolus platifrons, Bathymodiolus genome of B. platifrons was reported with sequence length of securiformis, and Sissano Bathymodiolus sp.1 which were collected 1.64 Gb nucleotides (Sun et al., 2017). from vent or seep environments at depth ranges of 1080-1380 Since 2013, under the Phase II National energy program of m. -
Geo-Biological Coupling of Authigenic Carbonate Formation and Autotrophic Faunal Colonization at Deep-Sea Methane Seeps II. Geo-Biological Landscapes
Chapter 3 Geo-Biological Coupling of Authigenic Carbonate Formation and Autotrophic Faunal Colonization at Deep-Sea Methane Seeps II. Geo-Biological Landscapes TakeshiTakeshi Naganuma Naganuma Additional information is available at the end of the chapter http://dx.doi.org/10.5772/intechopen.78978 Abstract Deep-sea methane seeps are typically shaped with authigenic carbonates and unique biomes depending on methane-driven and methane-derived metabolisms. Authigenic carbonates vary in δ13C values due probably to 13δC variation in the carbon sources (directly carbon dioxide and bicarbonate, and ultimately methane) which is affected by the generation and degradation (oxidation) of methane at respective methane seeps. Anaerobic oxidation of methane (AOM) by specially developed microbial consortia has significant influences on the carbonate13 δ C variation as well as the production of carbon dioxide and hydrogen sulfide for chemoautotrophic biomass production. Authigenesis of carbonates and faunal colonization are thus connected. Authigenic carbonates also vary in Mg contents that seem correlated again to faunal colonization. Among the colonizers, mussels tend to colonize low δ13C carbonates, while gutless tubeworms colonize high- Mg carbonates. The types and varieties of such geo-biological landscapes of methane seeps are overviewed in this chapter. A unique feature of a high-Mg content of the rock- tubeworm conglomerates is also discussed. Keywords: lithotrophy, chemoautotrophy, thiotrophy, methanotrophy, stable carbon isotope, δ13C, isotope fractionation, Δ13C, calcite, dolomite, anaerobic oxidation of methane (AOM), sulfate-methane transition zone (SMTZ), Lamellibrachia tubeworm, Bathymodiolus mussel, Calyptogena clam 1. Introduction Aristotle separated the world into two realms, nature and living things (originally animals), the latter having structures, processes, and functions of spontaneous formation and voluntary © 2016 The Author(s). -
Reproductive Ecology of Vestimentifera (Polychaeta: Siboglinidae) from Hydrothermal Vents and Cold Seeps
University of Southampton Research Repository ePrints Soton Copyright © and Moral Rights for this thesis are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holders. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given e.g. AUTHOR (year of submission) "Full thesis title", University of Southampton, name of the University School or Department, PhD Thesis, pagination http://eprints.soton.ac.uk University of Southampton Reproductive Ecology of Vestimentifera (Polychaeta: Siboglinidae) from Hydrothermal Vents and Cold Seeps PhD Dissertation submitted by Ana Hil´ario to the Graduate School of the National Oceanography Centre, Southampton in partial fulfillment of the requirements for the degree of Doctor of Philosophy June 2005 Graduate School of the National Oceanography Centre, Southampton This PhD dissertation by Ana Hil´ario has been produced under the supervision of the following persons Supervisors Prof. Paul Tyler and Dr Craig Young Chair of Advisory Panel Dr Martin Sheader Member of Advisory Panel Dr Jonathan Copley I hereby declare that no part of this thesis has been submitted for a degree to the University of Southampton, or any other University, at any time previously. The material included is the work of the author, except where expressly stated. -
M208p147.Pdf
MARINE ECOLOGY PROGRESS SERIES Vol. 208: 147–155, 2000 Published December 8 Mar Ecol Prog Ser Phylogenetic characterization of endosymbionts in three hydrothermal vent mussels: influence on host distributions Yoshihiro Fujiwara1,*, Ken Takai2, Katsuyuki Uematsu3, Shinji Tsuchida1, James C. Hunt1, Jun Hashimoto1 1Marine Ecosystems Research Department, Japan Marine Science and Technology Center (JAMSTEC), 2-15 Natsushima, Yokosuka 237-0061, Japan 2Frontier Research Program for Deep-Sea Environment, Japan Marine Science and Technology Center (JAMSTEC), 2-15 Natsushima, Yokosuka 237-0061, Japan 3Marine Work Japan Co., 2-15 Natsushima, Yokosuka 237-0061, Japan ABSTRACT: The bacterial endosymbionts of 3 hydrothermal vent mussels from Japanese waters were characterized by transmission electron microscopic (TEM) observation and phylogenetic analy- ses of 16S ribosomal RNA gene sequences. Endosymbionts of Bathymodiolus septemdierum were related to sulfur-oxidizing bacteria (thioautotrophs), while endosymbionts of B. platifrons and B. japonicus were related to methane-oxidizing bacteria (methanotrophs). This is the first report of deep-sea mussels containing only methanotrophs (lacking thioautotrophs) from hydrothermal vents. Comparison of methane and hydrogen sulfide concentrations in end-member fluids from deep-sea hydrothermal vents indicated that methane concentrations were much higher in habitats containing Bathymodiolus spp. which harbored only methanotrophs than in other habitats of hydrothermal vent mussels. The known distribution of other