Ubx and Haltere Cell Morphology
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Long Noncoding Rnas: Functional Surprises from the RNA World
Downloaded from genesdev.cshlp.org on September 25, 2021 - Published by Cold Spring Harbor Laboratory Press REVIEW Long noncoding RNAs: functional surprises from the RNA world Jeremy E. Wilusz,1 Hongjae Sunwoo,2 and David L. Spector1,3 1Watson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA; 2Graduate Program in Molecular and Cellular Biology, Stony Brook University, Stony Brook, New York 11794 Most of the eukaryotic genome is transcribed, yielding complexity. In addition, there has been an explosion of a complex network of transcripts that includes tens of research addressing possible functional roles for the thousands of long noncoding RNAs with little or no other 98% of the human genome that does not encode protein-coding capacity. Although the vast majority of proteins. Rather unexpectedly, transcription is not lim- long noncoding RNAs have yet to be characterized thor- ited to protein-coding regions, but is instead pervasive oughly, many of these transcripts are unlikely to represent throughout the mammalian genome as demonstrated by transcriptional ‘‘noise’’ as a significant number have been large-scale cDNA cloning projects (Carninci et al. 2005; shown to exhibit cell type-specific expression, localiza- Katayama et al. 2005) and genomic tiling arrays (Bertone tion to subcellular compartments, and association with et al. 2004; Cheng et al. 2005; Birney et al. 2007; Kapranov human diseases. Here, we highlight recent efforts that et al. 2007a). In fact, >90% of the human genome is likely have identified a myriad of molecular functions for long to be transcribed (Birney et al. 2007), yielding a complex noncoding RNAs. -
Perspectives
Copyright 0 1994 by the Genetics Society of America Perspectives Anecdotal, Historical and Critical Commentaries on Genetics Edited by James F. Crow and William F. Dove A Century of Homeosis, A Decade of Homeoboxes William McGinnis Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520-8114 NE hundred years ago, while the science of genet- ing mammals, and were proposed to encode DNA- 0 ics still existed only in the yellowing reprints of a binding homeodomainsbecause of a faint resemblance recently deceased Moravian abbot, WILLIAMBATESON to mating-type transcriptional regulatory proteins of (1894) coined the term homeosis to define a class of budding yeast and an even fainter resemblance to bac- biological variations in whichone elementof a segmen- terial helix-turn-helix transcriptional regulators. tally repeated array of organismal structures is trans- The initial stream of papers was a prelude to a flood formed toward the identity of another. After the redis- concerning homeobox genes and homeodomain pro- coveryof MENDEL’Sgenetic principles, BATESONand teins, a flood that has channeled into a steady river of others (reviewed in BATESON1909) realized that some homeo-publications, fed by many tributaries. A major examples of homeosis in floral organs and animal skel- reason for the continuing flow of studies is that many etons could be attributed to variation in genes. Soon groups, working on disparate lines of research, have thereafter, as the discipline of Drosophila genetics was found themselves swept up in the currents when they born and was evolving into a formidable intellectual found that their favorite protein contained one of the force enriching many biologicalsubjects, it gradually be- many subtypes of homeodomain. -
SHOO FLY! Houseflies, Those Pesky Flying Insects That Show up Uninvited
SHOO FLY! Houseflies, those pesky flying insects that show up uninvited at your summer picnic or slip into your house if you leave a door open too long, are so annoying. Sometimes it seems that they are everywhere! Did you know that there are more than 100,000 different kinds of flies? The housefly is frequently found around humans and on farms and ranches that raise animals. Flies are pests. Not only are they annoying, they also spread diseases to humans. Flies eat rotten things like dead animals, feces (poop), and garbage. As they crawl around on that stuff they pick up germs and spread them wherever they land. Flies are decomposers, living things (such as bacteria, fungus, or insect) that feed on and break down plant and animal matter into simpler parts. Decomposers act as a clean up crew and perform an important job, making sure all of that plant and animal matter doesn’t pile up. Fly Facts: Instead of having a skeleton inside their bodies, flies are hard on the outside and soft on the inside. Their type of skeleton is called an exoskeleton. Flies eat only liquid food. If they land on solid food, they spit on it through their proboscis (part of their mouth). This softens the food so they can eat it. A fly’s tongue is shaped like a straw to sip their food. Since they eat only liquids, flies poop a lot. It is thought that they poop every time they land, so they leave poop everywhere! Flies are very hard to swat because of their excellent eyesight, fast reaction time, and agility (the ability to move quickly and easily). -
Mosquitos Fail at Flight in Heavy Fog 19 November 2012
Mosquitos fail at flight in heavy fog 19 November 2012 Mosquitos have the remarkable ability to fly in clear These halteres are on a comparable size to the fog skies as well as in rain, shrugging off impacts from droplets and they flap approximately 400 times raindrops more than 50 times their body mass. But each second, striking thousands of drops per just like modern aircraft, mosquitos also are second. Though the halteres can normally repel grounded when the fog thickens. Researchers from water, repeated collisions with 5-micron fog the Georgia Institute of Technology present their particles hinders flight control, leading to flight findings at the 65th meeting of the American failure. Physical Society's (APS) Division of Fluid Dynamics, Nov. 18 - 20, in San Diego, Calif. "Thus the halteres cannot sense their position correctly and malfunction, similarly to how "Raindrop and fog impacts affect mosquitoes quite windshield wipers fail to work well when the rain is differently," said Georgia Tech researcher Andrew very heavy or if there is snow on the windshield," Dickerson. "From a mosquito's perspective, a said Dickerson. "This study shows us that insect falling raindrop is like us being struck by a small flight is similar to human flight in aircraft in that flight car. A fog particle – weighing 20 million times less is not possible when the insects cannot sense their than a mosquito – is like being struck by a crumb. surroundings." For humans, visibility hinders flight; Thus, fog is to a mosquito as rain is to a human." whereas for insects it is their gyroscopic flight sensors." On average during a rainstorm, mosquitos get struck by a drop once every 20 seconds, but fog More information: The talk, "Mosquito Flight particles surround the mosquito continuously as it Failure in Heavy Fog," is at 5 p.m. -
Phosphorylation, Expression and Function of the Ultrabithorax Protein Family in Drosophila Melanogaster
Development 112, 1077-1093 (1991) 1077 Printed in Great Britain © The Company of Biologists Limited 1991 Phosphorylation, expression and function of the Ultrabithorax protein family in Drosophila melanogaster ELIZABETH R. GAVIS* and DAVID S. HOGNESSt't Department of Biochemistry, Beckman Center, Stanford University School of Medicine, Stanford, California 94305 USA * Present address: Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, Massachusetts 02142 USA t Present address: Department of Developmental Biology, Beckman Center, Stanford University School of Medicine, Stanford, California, 94305 USA $ Author for correspondence Summary Alternative splicing of the Ultrabithorax homeotic gene parallel those for the respective mRNAs, and all transcript generates a family of five proteins (UBX isoforms are similarly phosphorylated throughout em- isoforms) that function as transcription factors. All bryogenesis. Analysis by cotransfection assays of the isoforms contain a homeodomain within a common 99 aa promoter activation and repression functions of mutant C-terminal region (C-constant region) which is joined to UBX proteins with various deletions in the N-constant a common 247 aa N-terminal (N-constant) region by region shows that repression is generally insensitive to different combinations of three small optional elements. deletion and, hence, presumably to phosphorylation. By Unlike the UBX proteins expressed in E. coli, UBX contrast, the activation function is differentially sensitive isoforms expressed in D. melanogaster cells are phos- to the different deletions in a manner indicating the phorylated on serine and threonine residues, located absence of a discrete activating domain and instead, the primarily within a 53 aa region near the middle of the presence of multiple activating sequences spread N-constant region, to form at least five phosphorylated throughout the region. -
Mechanisms of Wnt Signaling in Development
P1: APR/ary P2: ARS/dat QC: ARS/APM T1: ARS August 29, 1998 9:42 Annual Reviews AR066-03 Annu. Rev. Cell Dev. Biol. 1998. 14:59–88 Copyright c 1998 by Annual Reviews. All rights reserved MECHANISMS OF WNT SIGNALING IN DEVELOPMENT Andreas Wodarz Institut f¨ur Genetik, Universit¨at D¨usseldorf, Universit¨atsstrasse 1, 40225 D¨usseldorf, Germany; e-mail: [email protected] Roel Nusse Howard Hughes Medical Institute and Department of Developmental Biology, Stanford University, Stanford, CA 94305-5428; e-mail: [email protected] KEY WORDS: Wnt, wingless, frizzled, catenin, signal transduction ABSTRACT Wnt genes encode a large family of secreted, cysteine-rich proteins that play key roles as intercellular signaling molecules in development. Genetic studies in Drosophila and Caenorhabditis elegans, ectopic gene expression in Xenopus, and gene knockouts in the mouse have demonstrated the involvement of Wnts in pro- cesses as diverse as segmentation, CNS patterning, and control of asymmetric cell divisions. The transduction of Wnt signals between cells proceeds in a complex series of events including post-translational modification and secretion of Wnts, binding to transmembrane receptors, activation of cytoplasmic effectors, and, finally, transcriptional regulation of target genes. Over the past two years our understanding of Wnt signaling has been substantially improved by the identifi- cation of Frizzled proteins as cell surface receptors for Wnts and by the finding that -catenin, a component downstream of the receptor, can translocate to the nucleus and function as a transcriptional activator. Here we review recent data that have started to unravel the mechanisms of Wnt signaling. -
Insect Order ID: Diptera (Flies, Gnats, Midges, Mosquitoes, Maggots)
Return to insect order home Page 1 of 3 Visit us on the Web: www.gardeninghelp.org Insect Order ID: Diptera (Flies, Gnats, Midges, Mosquitoes, Maggots) Life Cycle–Complete metamorphosis: Adults lay eggs. Eggs hatch into larvae (maggots, wigglers, etc.). Larvae eat, grow and molt. This stage is repeated a varying number of times, depending on species, until hormonal changes cause larvae to pupate. Inside the pupal case the pupae change in form and in color and develop wings. The emerging adults look completely different from the larvae. Adults–All (except a few wingless species) have only one pair of membranous wings, thus the name Diptera meaning "two wings". The forewings are fully developed and functional, while the hindwings are reduced to knobbed clubs called halteres, which are difficult to see without magnification except for larger specimens (e.g., crane flies). They are the best fliers in the insect world and possibly beyond: they can hover, fly backwards and upside-down and turn on the spot. Their eyes are usually large and multi-faceted, with males usually having larger eyes than females. Although many mimic bees and wasps, none have stingers. The order Diptera comprises two main suborders: long-horned (Nematocera) and short-horned Brachycera). Nematocera have long legs, long antennae and look fragile (e.g., mosquitoes, gnats, and midges, etc.) while Brachycera have stout bodies and short, stout antennae (e.g., horse flies, house flies, robber flies, hover flies, etc.). (Click images to enlarge or orange text for more information.) One pair of wings One pair of halteres Large, multifaceted eyes Robust-looking Short, stubby antennae Fragile-looking Many species are tiny Brachycera (Brachycera) Nematocera (Nematocera) Return to insect order home Page 2 of 3 Eggs–Adults lay eggs, usually where larval food is plentiful. -
Flies) Benjamin Kongyeli Badii
Chapter Phylogeny and Functional Morphology of Diptera (Flies) Benjamin Kongyeli Badii Abstract The order Diptera includes all true flies. Members of this order are the most ecologically diverse and probably have a greater economic impact on humans than any other group of insects. The application of explicit methods of phylogenetic and morphological analysis has revealed weaknesses in the traditional classification of dipteran insects, but little progress has been made to achieve a robust, stable clas- sification that reflects evolutionary relationships and morphological adaptations for a more precise understanding of their developmental biology and behavioral ecol- ogy. The current status of Diptera phylogenetics is reviewed in this chapter. Also, key aspects of the morphology of the different life stages of the flies, particularly characters useful for taxonomic purposes and for an understanding of the group’s biology have been described with an emphasis on newer contributions and progress in understanding this important group of insects. Keywords: Tephritoidea, Diptera flies, Nematocera, Brachycera metamorphosis, larva 1. Introduction Phylogeny refers to the evolutionary history of a taxonomic group of organisms. Phylogeny is essential in understanding the biodiversity, genetics, evolution, and ecology among groups of organisms [1, 2]. Functional morphology involves the study of the relationships between the structure of an organism and the function of the various parts of an organism. The old adage “form follows function” is a guiding principle of functional morphology. It helps in understanding the ways in which body structures can be used to produce a wide variety of different behaviors, including moving, feeding, fighting, and reproducing. It thus, integrates concepts from physiology, evolution, anatomy and development, and synthesizes the diverse ways that biological and physical factors interact in the lives of organisms [3]. -
Representation of Haltere Oscillations and Integration with Visual Inputs in the Fly Central Complex
4100 • The Journal of Neuroscience, May 22, 2019 • 39(21):4100–4112 Systems/Circuits Representation of Haltere Oscillations and Integration with Visual Inputs in the Fly Central Complex X Nicholas D. Kathman and XJessica L. Fox Department of Biology, Case Western Reserve University, Cleveland, Ohio 44106 The reduced hindwings of flies, known as halteres, are specialized mechanosensory organs that detect body rotations during flight. Primary afferents of the haltere encode its oscillation frequency linearly over a wide bandwidth and with precise phase-dependent spiking. However, it is not currently known whether information from haltere primary afferent neurons is sent to higher brain centers where sensory information about body position could be used in decision making, or whether precise spike timing is useful beyond the peripheral circuits that drive wing movements. We show that in cells in the central brain, the timing and rates of neural spiking can be modulatedbysensoryinputfromexperimentalhalteremovements(drivenbyaservomotor).Usingmultichannelextracellularrecording in restrained flesh flies (Sarcophaga bullata of both sexes), we examined responses of central complex cells to a range of haltere oscillation frequencies alone, and in combination with visual motion speeds and directions. Haltere-responsive units fell into multiple response classes, including those responding to any haltere motion and others with firing rates linearly related to the haltere frequency. Cells with multisensory responses showed higher firing rates than the sum of the unisensory responses at higher haltere frequencies. They also maintained visual properties, such as directional selectivity, while increasing response gain nonlinearly with haltere frequency. Although haltere inputs have been described extensively in the context of rapid locomotion control, we find haltere sensory information in a brain region known to be involved in slower, higher-order behaviors, such as navigation. -
Biomechanical Basis of Wing and Haltere Coordination in Flies
Biomechanical basis of wing and haltere coordination in flies Tanvi Deora, Amit Kumar Singh, and Sanjay P. Sane1 National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore 560065, India Edited by M. A. R. Koehl, University of California, Berkeley, CA, and approved December 16, 2014 (received for review June 30, 2014) The spectacular success and diversification of insects rests critically unclear, especially in its ability to mediate rapid wing movement. on two major evolutionary adaptations. First, the evolution of flight, Moreover, faster wing movements require rapid sensory motor which enhanced the ability of insects to colonize novel ecological integration by the insect nervous system. The hind wings of habitats, evade predators, or hunt prey; and second, the miniatur- Diptera have evolved into a pair of mechanosensory halteres that ization of their body size, which profoundly influenced all aspects of detect gyroscopic forces during flight (10–13). The rapid feed- their biology from development to behavior. However, miniaturi- back from halteres is essential for flies to sense and control self- zation imposes steep demands on the flight system because smaller rotations during complex aerobatic maneuvers (13–15). In the insects must flap their wings at higher frequencies to generate majority of flies, the bilateral wings move in-phase, whereas sufficient aerodynamic forces to stay aloft; it also poses challenges halteres move antiphase relative to the wings. This relative co- to the sensorimotor system because precise control of wing ordination between wings and halteres is extremely precise even kinematics and body trajectories requires fast sensory feedback. at frequencies far exceeding 100 Hz. -
Mrg15 Stimulates Ash1 H3K36 Methyltransferase Activity and Facilitates Ash1 Trithorax Group Protein Function in Drosophila
ARTICLE DOI: 10.1038/s41467-017-01897-3 OPEN Mrg15 stimulates Ash1 H3K36 methyltransferase activity and facilitates Ash1 Trithorax group protein function in Drosophila Chang Huang1, Fu Yang2, Zhuqiang Zhang1, Jing Zhang1, Gaihong Cai2, Lin Li2, Yong Zheng1, She Chen2, Rongwen Xi2 & Bing Zhu1,3 fi 1234567890 Ash1 is a Trithorax group protein that possesses H3K36-speci c histone methyltransferase activity, which antagonizes Polycomb silencing. Here we report the identification of two Ash1 complex subunits, Mrg15 and Nurf55. In vitro, Mrg15 stimulates the enzymatic activity of Ash1. In vivo, Mrg15 is recruited by Ash1 to their common targets, and Mrg15 reinforces Ash1 chromatin association and facilitates the proper deposition of H3K36me2. To dissect the functional role of Mrg15 in the context of the Ash1 complex, we identify an Ash1 point mutation (Ash1-R1288A) that displays a greatly attenuated interaction with Mrg15. Knock-in flies bearing this mutation display multiple homeotic transformation phenotypes, and these phenotypes are partially rescued by overexpressing the Mrg15-Nurf55 fusion protein, which stabilizes the association of Mrg15 with Ash1. In summary, Mrg15 is a subunit of the Ash1 complex, a stimulator of Ash1 enzymatic activity and a critical regulator of the TrxG protein function of Ash1 in Drosophila. 1 National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China. 2 National institute of Biological Sciences, Beijing 102206, China. 3 College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China. Chang Huang, Fu Yang and Zhuqiang Zhang contributed equally to this work. Correspondence and requests for materials should be addressed to R.X. -
Control of Tissue Morphogenesis by the HOX Gene Ultrabithorax Maria-Del-Carmen Diaz-De-La-Loza1, Ryan Loker2,3, Richard S
© 2020. Published by The Company of Biologists Ltd | Development (2020) 147, dev184564. doi:10.1242/dev.184564 RESEARCH ARTICLE Control of tissue morphogenesis by the HOX gene Ultrabithorax Maria-del-Carmen Diaz-de-la-Loza1, Ryan Loker2,3, Richard S. Mann2,3 and Barry J. Thompson1,4,* ABSTRACT domain named the ‘homeobox’ that is found throughout the HOX Mutations in the Ultrabithorax (Ubx) gene cause homeotic family of transcription factors (Affolter et al., 1990a,b, 2008; Akam transformation of the normally two-winged Drosophila into a four- et al., 1984; Akam, 1983; Beachy et al., 1985; Bender et al., 1983; winged mutant fly. Ubx encodes a HOX family transcription factor that Casanova et al., 1985; Chan et al., 1994; Chan and Mann, 1993; specifies segment identity, including transformation of the second set Desplan et al., 1988; Gehring, 1992; Mann and Hogness, 1990; of wings into rudimentary halteres. Ubx is known to control the McGinnis et al., 1984a,b; Sánchez-Herrero et al., 1985; Scott and expression of many genes that regulate tissue growth and patterning, Weiner, 1984; Struhl, 1982). but how it regulates tissue morphogenesis to reshape the wing into a In Drosophila, mutations in Ubx alter the identity of an entire haltere is still unclear. Here, we show that Ubx acts by repressing the segment of the body plan, namely transformation of the third expression of two genes in the haltere, Stubble and Notopleural, both thoracic segment into a duplicated second thoracic segment of which encode transmembrane proteases that remodel the apical (Bridges, 1944; Lewis, 1963, 1978, 1998). Ubx is strongly extracellular matrix to promote wing morphogenesis.