Mitochondrial Loss, Dysfunction and Altered Dynamics in Huntington's Disease
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Role of Tomm40'523 – Apoe Haplotypes in Alzheimer's Disease Etiology
ROLE OF TOMM40’523 – APOE HAPLOTYPES IN ALZHEIMER’S DISEASE ETIOLOGY – FROM CLINICS TO MITOCHONDRIA RÈMY CARDOSO Tese para obtenção do grau de Doutor em EnvelHecimento e Doenças Crónicas Doutoramento em associação entre: Universidade NOVA de Lisboa (Faculdade de Ciências Médicas | NOVA Medical ScHool - FCM|NMS/UNL) Universidade de Coimbra (Faculdade de Medicina - FM/UC) Universidade do MinHo (Escola de Medicina - EMed/UM) Novembro, 2020 ROLE OF TOMM40’523 – APOE HAPLOTYPES IN ALZHEIMER’S DISEASE ETIOLOGY – FROM CLINICS TO MITOCHONDRIA Rèmy Cardoso Professora Doutora Catarina Resende Oliveira, Professora Catedrática Jubilada da FM/UC Professor Doutor Duarte Barral, Professor Associado da FCM|NMS/UNL Tese para obtenção do grau de Doutor em EnvelHecimento e Doenças Crónicas Doutoramento em associação entre: Universidade NOVA de Lisboa (Faculdade de Ciências Médicas | NOVA Medical ScHool - FCM|NMS/UNL) Universidade de Coimbra (Faculdade de Medicina - FM/UC) Universidade do MinHo (Escola de Medicina - EMed/UM) Novembro, 2020 This thesis was conducted at the Center for Neuroscience and Cell Biology (CNC.CIBB) of University of Coimbra and Coimbra University Hospital (CHUC) and was a collaboration of the following laboratories and departments with the supervision of Catarina Resende Oliveira MD, PhD, Full Professor of FM/UC and the co-supervision of Duarte Barral PhD, Associated professor of Nova Medical School, Universidade Nova de Lisboa: • Neurogenetics laboratory (CNC.CIBB) headed by Maria Rosário Almeida PhD • Neurochemistry laboratory (CHUC) -
Dissertation Philip Böhler
Three Tales of Death: New Pathways in the Induction, Inhibition and Execution of Apoptosis Inaugural-Dissertation zur Erlangung des Doktorgrades der Mathematisch-Naturwissenschaftlichen Fakultät der Heinrich-Heine-Universität Düsseldorf vorgelegt von Philip Böhler aus Bonn Düsseldorf, Juni 2019 aus dem Institut für Molekulare Medizin I der Heinrich-Heine-Universität Düsseldorf Gedruckt mit der Genehmigung der Mathematisch-Naturwissenschaftlichen Fakultät der Heinrich-Heine-Universität Düsseldorf Berichterstatter: 1. Prof. Dr. Sebastian Wesselborg 2. Prof. Dr. Henrike Heise Tag der mündlichen Prüfung: 29. Oktober 2019 “Where the first primal cell was, there was I also. Where man is, there am I. When the last life crawls under freezing stars, there will I be.” — DEATH, in: Mort, by Terry Pratchett “Right away I found out something about biology: it was very easy to find a question that was very interesting, and that nobody knew the answer to.” — Richard Feynman, in: Surely You're Joking, Mr. Feynman! Acknowledgements (Danksagung) Acknowledgements (Danksagung) Viele Menschen haben zum Gelingen meiner Forschungsarbeit und dieser Dissertation beigetragen, und nicht alle können hier namentlich erwähnt werden. Dennoch möchte ich einige besonders hervorheben. An erster Stelle möchte ich Professor Sebastian Wesselborg danken, der diese Dissertation als Erstgutachter betreut hat und der mir die Möglichkeit gab, die dazugehörigen experimentellen Arbeiten am Institut für Molekulare Medizin durchzuführen. Er und Professor Björn Stork, dem ich für die herzliche Aufnahme in seine Arbeitsgruppe danke, legten durch die richtige Mischung aus aktiver Förderung und dem Freiraum zur Umsetzung eigener wissenschaftlicher Ideen die ideale Grundlage für die Forschungsprojekte, aus denen diese Dissertation entstand. Professorin Henrike Heise, die sich freundlicherweise zur Betreuung dieser Dissertation als Zweitgutachterin bereiterklärt hat, gilt ebenfalls mein herzlicher Dank. -
Huang Grad.Sunysb 0771E 10211
SSStttooonnnyyy BBBrrrooooookkk UUUnnniiivvveeerrrsssiiitttyyy The official electronic file of this thesis or dissertation is maintained by the University Libraries on behalf of The Graduate School at Stony Brook University. ©©© AAAllllll RRRiiiggghhhtttsss RRReeessseeerrrvvveeeddd bbbyyy AAAuuuttthhhooorrr... Development of a quantitative assay for mitochondrial fusion and characterization of a lipid signaling pathway on the mitochondrial surface A Dissertation Presented by Huiyan Huang to The Graduate School in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Molecular and Cellular Pharmacology Stony Brook University August 2010 Stony Brook University The Graduate School Huiyan Huang We, the dissertation committee for the above candidate for the Doctor of Philosophy degree, hereby recommend acceptance of this dissertation. Michael A. Frohman, M.D., Ph.D. - Dissertation Advisor Professor Department of Pharmacological Sciences Daniel F. Bogenhagen, MD - Chairperson of the Defense Professor Department of Pharmacological Sciences Robert S. Haltiwanger, Ph.D. Professor Department of Biochemistry and Structural Biology Deborah A. Brown, Ph.D. Professor Department of Biochemistry and Structural Biology This dissertation is accepted by the Graduate School. Lawrence Martin Dean of the Graduate School ii Abstract of the Dissertation Development of a quantitative assay for mitochondrial fusion and characterization of a lipid signaling pathway on the mitochondrial surface by Huiyan Huang Doctor of Philosophy in Molecular and Cellular Pharmacology Stony Brook University 2010 Mitochondria continuously undergo fusion and fission, the relative rates of which define their morphology. Mitochondrial fusion is currently assayed by fusing together cells expressing GFP or RFP in their mitochondria and then scoring the frequency of cells with yellow mitochondria (representing fused green and red mitochondria). -
Altered Expression and Function of Mitochondrial Я-Oxidation Enzymes
0031-3998/01/5001-0083 PEDIATRIC RESEARCH Vol. 50, No. 1, 2001 Copyright © 2001 International Pediatric Research Foundation, Inc. Printed in U.S.A. Altered Expression and Function of Mitochondrial -Oxidation Enzymes in Juvenile Intrauterine-Growth-Retarded Rat Skeletal Muscle ROBERT H. LANE, DAVID E. KELLEY, VLADIMIR H. RITOV, ANNA E. TSIRKA, AND ELISA M. GRUETZMACHER Department of Pediatrics, UCLA School of Medicine, Mattel Children’s Hospital at UCLA, Los Angeles, California 90095, U.S.A. [R.H.L.]; and Departments of Internal Medicine [D.E.K., V.H.R.] and Pediatrics [R.H.L., A.E.T., E.M.G.], University of Pittsburgh School of Medicine, Magee-Womens Research Institute, Pittsburgh, Pennsylvania 15213, U.S.A. ABSTRACT Uteroplacental insufficiency and subsequent intrauterine creased in IUGR skeletal muscle mitochondria, and isocitrate growth retardation (IUGR) affects postnatal metabolism. In ju- dehydrogenase activity was unchanged. Interestingly, skeletal venile rats, IUGR alters skeletal muscle mitochondrial gene muscle triglycerides were significantly increased in IUGR skel- expression and reduces mitochondrial NADϩ/NADH ratios, both etal muscle. We conclude that uteroplacental insufficiency alters of which affect -oxidation flux. We therefore hypothesized that IUGR skeletal muscle mitochondrial lipid metabolism, and we gene expression and function of mitochondrial -oxidation en- speculate that the changes observed in this study play a role in zymes would be altered in juvenile IUGR skeletal muscle. To test the long-term morbidity associated with IUGR. (Pediatr Res 50: this hypothesis, mRNA levels of five key mitochondrial enzymes 83–90, 2001) (carnitine palmitoyltransferase I, trifunctional protein of -oxi- dation, uncoupling protein-3, isocitrate dehydrogenase, and mi- Abbreviations tochondrial malate dehydrogenase) and intramuscular triglycer- CPTI, carnitine palmitoyltransferase I ides were quantified in 21-d-old (preweaning) IUGR and control IUGR, intrauterine growth retardation rat skeletal muscle. -
Mff Regulation of Mitochondrial Cell Death Is a Therapeutic
Author Manuscript Published OnlineFirst on October 3, 2019; DOI: 10.1158/0008-5472.CAN-19-1982 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Rev. Ms. CAN-19-1982 MFF REGULATION OF MITOCHONDRIAL CELL DEATH IS A THERAPEUTIC TARGET IN CANCER Jae Ho Seo1,2, Young Chan Chae1,2,3*, Andrew V. Kossenkov4, Yu Geon Lee3, Hsin-Yao Tang4, Ekta Agarwal1,2, Dmitry I. Gabrilovich1,2, Lucia R. Languino1,5, David W. Speicher1,4,6, Prashanth K. Shastrula7, Alessandra M. Storaci8,9, Stefano Ferrero8,10, Gabriella Gaudioso8, Manuela Caroli11, Davide Tosi12, Massimo Giroda13, Valentina Vaira8,9, Vito W. Rebecca6, Meenhard Herlyn6, Min Xiao6, Dylan Fingerman6, Alessandra Martorella6, Emmanuel Skordalakes7 and Dario C. Altieri1,2* 1Prostate Cancer Discovery and Development Program 2Immunology, Microenvironment and Metastasis Program, The Wistar Institute, Philadelphia, PA 19104 USA 3School of Life Sciences, Ulsan National Institute of Science and Technology, Ulsan 44919, Republic of Korea 4Center for Systems and Computational Biology, The Wistar Institute, Philadelphia, PA 19104, USA 5Department of Cancer Biology, Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA 19107 USA 6Molecular and Cellular Oncogenesis Program, The Wistar Institute, Philadelphia, PA 19104, USA 7Gene Expression and Regulation Program, The Wistar Institute, Philadelphia, PA 19104, USA 1 Downloaded from cancerres.aacrjournals.org on September 29, 2021. © 2019 American Association for Cancer Research. Author Manuscript -
Mt-Atp8 Gene in the Conplastic Mouse Strain C57BL/6J-Mtfvb/NJ on the Mitochondrial Function and Consequent Alterations to Metabolic and Immunological Phenotypes
From the Lübeck Institute of Experimental Dermatology of the University of Lübeck Director: Prof. Dr. Saleh M. Ibrahim Interplay of mtDNA, metabolism and microbiota in the pathogenesis of AIBD Dissertation for Fulfillment of Requirements for the Doctoral Degree of the University of Lübeck from the Department of Natural Sciences Submitted by Paul Schilf from Rostock Lübeck, 2016 First referee: Prof. Dr. Saleh M. Ibrahim Second referee: Prof. Dr. Stephan Anemüller Chairman: Prof. Dr. Rainer Duden Date of oral examination: 30.03.2017 Approved for printing: Lübeck, 06.04.2017 Ich versichere, dass ich die Dissertation ohne fremde Hilfe angefertigt und keine anderen als die angegebenen Hilfsmittel verwendet habe. Weder vorher noch gleichzeitig habe ich andernorts einen Zulassungsantrag gestellt oder diese Dissertation vorgelegt. ABSTRACT Mitochondria are critical in the regulation of cellular metabolism and influence signaling processes and inflammatory responses. Mitochondrial DNA mutations and mitochondrial dysfunction are known to cause a wide range of pathological conditions and are associated with various immune diseases. The findings in this work describe the effect of a mutation in the mitochondrially encoded mt-Atp8 gene in the conplastic mouse strain C57BL/6J-mtFVB/NJ on the mitochondrial function and consequent alterations to metabolic and immunological phenotypes. This work provides insights into the mutation-induced cellular adaptations that influence the inflammatory milieu and shape pathological processes, in particular focusing on autoimmune bullous diseases, which have recently been reported to be associated with mtDNA polymorphisms in the human MT-ATP8 gene. The mt-Atp8 mutation diminishes the assembly of the ATP synthase complex into multimers and decreases mitochondrial respiration, affects generation of reactive oxygen species thus leading to a shift in the metabolic balance and reduction in the energy state of the cell as indicated by the ratio ATP to ADP. -
Mitochondrial Rhomboid PARL Regulates Cytochrome C Release During Apoptosis Via OPA1-Dependent Cristae Remodeling
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Mitochondrial Rhomboid PARL Regulates Cytochrome c Release during Apoptosis via OPA1-Dependent Cristae Remodeling Sara Cipolat,1,7 Tomasz Rudka,2,7 Dieter Hartmann,2,7 Veronica Costa,1 Lutgarde Serneels,2 Katleen Craessaerts,2 Kristine Metzger,2 Christian Frezza,1 Wim Annaert,3 Luciano D’Adamio,5 Carmen Derks,2 Tim Dejaegere,2 Luca Pellegrini,6 Rudi D’Hooge,4 Luca Scorrano,1,* and Bart De Strooper2,* 1 Dulbecco-Telethon Institute, Venetian Institute of Molecular Medicine, Padova, Italy 2 Neuronal Cell Biology and Gene Transfer Laboratory 3 Membrane Trafficking Laboratory Center for Human Genetics, Flanders Interuniversity Institute for Biotechnology (VIB4) and K.U.Leuven, Leuven, Belgium 4 Laboratory of Biological Psychology, K.U.Leuven, Leuven, Belgium 5 Albert Einstein College of Medicine, Bronx, NY 10461, USA 6 Centre de Recherche Robert Giffard, Universite` Laval, G1J 2G3 Quebec, Canada 7 These authors contribute equally to this work. *Contact: [email protected] (L.S.); [email protected] (B.D.S.) DOI 10.1016/j.cell.2006.06.021 SUMMARY been identified in D. melanogaster (Freeman, 2004), where they function as essential activators of the epidermal Rhomboids, evolutionarily conserved integral growth factor (EGF) signaling pathway, proteolytically membrane proteases, participate in crucial sig- cleaving the EGF receptor ligands Spitz, Gurken, and naling pathways. Presenilin-associated rhom- Keren. Since all Rhomboids share a conserved serine boid-like (PARL) is an inner mitochondrial protease catalytic dyad (Lemberg et al., 2005), it has membrane rhomboid of unknown function, been suggested that they are able to cleave proteins in whose yeast ortholog is involved in mito- the transmembrane domain. -
The Emerging Neuroprotective Role of Mitochondrial Uncoupling Protein
Review Article • DOI: 10.1515/tnsci-2015-0019 • Translational Neuroscience • 6 • 2015 • 179-186 Translational Neuroscience THE EMERGING NEUROPROTECTIVE ROLE Kieran P. Normoyle1,2,3, OF MITOCHONDRIAL Miri Kim2,4, Arash Farahvar5, UNCOUPLING PROTEIN-2 Daniel Llano1,6,7, Kevin Jackson7,8, IN TRAUMATIC BRAIN INJURY Huan Wang6,8* Abstract 1Department of Molecular and Integrative Traumatic brain injury (TBI) is a multifaceted disease with intrinsically complex heterogeneity and remains a Physiology, University of Illinois at Urbana- Champaign, Urbana, IL, USA significant clinical challenge to manage. TBI model systems have demonstrated many mechanisms that contribute 2College of Medicine, University of Illinois at to brain parenchymal cell death, including glutamate and calcium toxicity, oxidative stress, inflammation, and Urbana-Champaign, Urbana, IL, USA mitochondrial dysfunction. Mitochondria are critically regulated by uncoupling proteins (UCP), which allow 3Department of Child Neurology, Massachusetts protons to leak back into the matrix and thus reduce the mitochondrial membrane potential by dissipating the General Hospital, Boston, MA, USA 4Department of Cell and Developmental Biology, proton motive force. This uncoupling of oxidative phosphorylation from adenosine triphosphate (ATP) synthesis University of Illinois at Urbana-Champaign, is potentially critical for protection against cellular injury as a result of TBI and stroke. A greater understanding Urbana, IL, USA of the underlying mechanism or mechanisms by which uncoupling protein-2 -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
RT² Profiler PCR Array (96-Well Format and 384-Well [4 X 96] Format)
RT² Profiler PCR Array (96-Well Format and 384-Well [4 x 96] Format) Human Mitochondria Cat. no. 330231 PAHS-087ZA For pathway expression analysis Format For use with the following real-time cyclers RT² Profiler PCR Array, Applied Biosystems® models 5700, 7000, 7300, 7500, Format A 7700, 7900HT, ViiA™ 7 (96-well block); Bio-Rad® models iCycler®, iQ™5, MyiQ™, MyiQ2; Bio-Rad/MJ Research Chromo4™; Eppendorf® Mastercycler® ep realplex models 2, 2s, 4, 4s; Stratagene® models Mx3005P®, Mx3000P®; Takara TP-800 RT² Profiler PCR Array, Applied Biosystems models 7500 (Fast block), 7900HT (Fast Format C block), StepOnePlus™, ViiA 7 (Fast block) RT² Profiler PCR Array, Bio-Rad CFX96™; Bio-Rad/MJ Research models DNA Format D Engine Opticon®, DNA Engine Opticon 2; Stratagene Mx4000® RT² Profiler PCR Array, Applied Biosystems models 7900HT (384-well block), ViiA 7 Format E (384-well block); Bio-Rad CFX384™ RT² Profiler PCR Array, Roche® LightCycler® 480 (96-well block) Format F RT² Profiler PCR Array, Roche LightCycler 480 (384-well block) Format G RT² Profiler PCR Array, Fluidigm® BioMark™ Format H Sample & Assay Technologies Description The Human Mitochondria RT² Profiler PCR Array profiles the expression of 84 genes involved in the biogenesis and function of the cell's powerhouse organelle. The genes monitored by this array include regulators and mediators of mitochondrial molecular transport of not only the metabolites needed for the electron transport chain and oxidative phosphorylation, but also the ions required for maintaining the mitochondrial membrane polarization and potential important for ATP synthesis. Metabolism and energy production are not the only functions of mitochondria. -
ALS-Linked Mutant Superoxide Dismutase 1 (SOD1) Alters Mitochondrial Protein Composition and Decreases Protein Import
ALS-linked mutant superoxide dismutase 1 (SOD1) alters mitochondrial protein composition and decreases protein import Quan Lia,1, Christine Vande Veldeb,c,1, Adrian Israelsonb, Jing Xied, Aaron O. Baileye, Meng-Qui Donge, Seung-Joo Chuna, Tamal Royb, Leah Winera, John R. Yatese, Roderick A. Capaldid, Don W. Clevelandb,2, and Timothy M. Millera,b,2 aDepartment of Neurology, Hope Center for Neurological Disorders, The Washington University School of Medicine, St. Louis, MO 63110; bLudwig Institute and Departments of Cellular and Molecular Medicine and Neuroscience, University of California at San Diego, La Jolla, CA 92093-0670; cDepartment of Medicine, Centre Hospitalier de l’Université de Montréal Research Center, Université de Montréal, Montreal, QC, Canada H2L 4M1; eDepartment of Cell Biology, The Scripps Research Institute, La Jolla, CA 92037; and dMitoSciences, Eugene, OR 97403 Contributed by Don W. Cleveland, October 18, 2010 (sent for review February 4, 2010) Mutations in superoxide dismutase 1 (SOD1) cause familial ALS. system very little SOD1 is found in or on mitochondria (20, 21), Mutant SOD1 preferentially associates with the cytoplasmic face of but mutant SOD1 has been found associated presymptomatically mitochondria from spinal cords of rats and mice expressing SOD1 with the cytoplasmic face of mitochondria from spinal cord in all mutations. Two-dimensional gels and multidimensional liquid chro- rodent models of SOD1 mutant-mediated disease (20, 21). A matography, in combination with tandem mass spectrometry, criticism that apparent association of dismutase inactive mutants fl revealed 33 proteins that were increased and 21 proteins that with mitochondria might re ect cosedimentation of protein G93A aggregates rather than bona fide mitochondrial association (22) were decreased in SOD1 rat spinal cord mitochondria com- fl pared with SOD1WT spinal cord mitochondria. -
Mitochondrial Network Fragmentation Modulates Mutant Mtdna Accumulation Independently of Absolute Fission-Fusion Rates
bioRxiv preprint doi: https://doi.org/10.1101/409128; this version posted September 5, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Mitochondrial network fragmentation modulates mutant mtDNA accumulation independently of absolute fission-fusion rates Juvid Aryaman1, Charlotte Bowles2, Nick S. Jones1,3*, Iain G. Johnston2,3,4† 1 Department of Mathematics, Imperial College London, London, United Kingdom 2 School of Biosciences, University of Birmingham, Birmingham, United Kingdom 3 EPSRC Centre for the Mathematics of Precision Healthcare, Imperial College London, London, United Kingdom 4 Lead Contact *[email protected] †[email protected] Summary Mitochondrial DNA (mtDNA) mutations cause severe congenital diseases but may also be associated with healthy aging. MtDNA is stochastically replicated and degraded, and exists within organelles which undergo dynamic fusion and fission. The role of the resulting mitochondrial networks in determining the time evolution of the cellular proportion of mutated mtDNA molecules (heteroplasmy), and cell-to-cell variability in heteroplasmy (heteroplasmy variance), remains incompletely understood. Heteroplasmy variance is particularly important since it modulates the number of pathological cells in a tissue. Here, we provide the first wide- reaching mathematical treatment which bridges mitochondrial network and genetic states. We show that, for a range of models, the rate of increase in heteroplasmy variance, and the rate of de novo mutation, is proportionately modulated by the fraction of unfused mitochondria, independently of the absolute fission- fusion rate.